Longitudinal analysis of SARS-CoV-2 spike and RNA-dependent RNA polymerase protein sequences reveals the emergence and geographic distribution of diverse mutations

Infection, Genetics and Evolution - Tập 97 - Trang 105153 - 2022
William M. Showers1,2, Sonia M. Leach1,2, Katerina Kechris1, Michael Strong1,2
1University of Colorado Anschutz Medical Campus, 13001 East 17th Place, Aurora, CO, USA
2Center for Genes, Environment, and Health, National Jewish Health, Smith Building, Room A651, 1400 Jackson Street, Denver, CO, USA

Tài liệu tham khảo

Caswell TA, Droettboom M, Lee A, Hunter J, Firing E, Andrade ESD, Hoffmann T, Stansby D, Klymak J, Varoquaux N, et al. matplotlib/matplotlib: REL: v3.2.2. Zenodo; 2020. https://zenodo.org/record/3898017. doi:https://doi.org/10.5281/ZENODO.3898017.

Crackower, 2002, 417, 7

Faria, 2021, Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil, Epidemiology

Farkas, 2020

Graham MS, Sudre CH, May A, Antonelli M, Murray B, Varsavsky T, Kläser K, Canas LS, Molteni E, Modat M, et al. The effect of SARS-CoV-2 variant B.1.1.7 on symptomatology, re-infection and transmissibility:31.

2020

2020

2020

John Hopkins University, 2020

Kluyver, 2016, Jupyter notebooks—a publishing format for reproducible computational workflows, 87

Rambaut, 2020, Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations - SARS-CoV-2 coronavirus / nCoV-2019 Genomic Epidemiology

RStudio, 2020

Tada, 2021, Convalescent-Phase Sera and Vaccine-Elicited Antibodies Largely Maintain Neutralizing Titer against Global SARS-CoV-2 Variant Spikes, mBio, 12, e0069621, 10.1128/mBio.00696-21

2020

Tu, 2021, Distinct patterns of emergence of SARS-CoV-2 spike variants including N501Y in clinical samples in Columbus Ohio, Genomics

Weisblum, 2020, Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants, eLife., 9, 10.7554/eLife.61312

West, 2021, SARS-CoV-2 lineage B.1.526 emerging in the New York region detected by software utility created to query the spike mutational landscape, Bioinformatics