Phylogenomics and taxon-rich phylogenies of new and historical specimens shed light on the systematics of Hypnea (Cystocloniaceae, Rhodophyta)

Molecular Phylogenetics and Evolution - Tập 183 - Trang 107752 - 2023
Priscila Barreto de Jesus1,2, Goia de Mattos Lyra3,4,5, Hongrui Zhang4, Mutue Toyota Fujii6, Fabio Nauer6,2, José Marcos de Castro Nunes3,5, Charles C. Davis4, Mariana Cabral Oliveira2
1Centro de Ciências Naturais e Humanas, Universidade Federal do ABC (CCNH - UFABC), Rua Arcturus 03, São Bernardo do Campo, São Paulo, 09606-070, Brazil
2Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, São Paulo, São Paulo, 05508-090, Brazil
3Programa de Pós-Graduação em Biodiversidade e Evolução, Instituto de Biologia, Universidade Federal da Bahia, Rua Barão de Jeremoabo, s/n, Salvador, Bahia, 40170-115, Brasil
4Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Avenue, Cambridge Massachusetts 02138, USA
5Laboratório de Algas Marinhas, Instituto de Biologia, Universidade Federal da Bahia, Rua Barão de Jeremoabo, s/n, Salvador Bahia 40170-115, Brasil
6Núcleo de Conservação da Biodiversidade, Instituto de Pesquisas Ambientais, Av. Miguel Estefano 3687, 04301-902, São Paulo, Brazil

Tài liệu tham khảo

Agardh, J. G. 1852. Species Genera et Ordines Algarum, Vol. 2. Pars 2. Gleerup, Lund, Sweden, pp. 337-720.

Andrews, S., 2011. FastQC. Babraham Institute, Cambridge, United Kingdom. http://www.bioinformatics.babraham.ac.uk/projects/fastqc.

Döring, R., Dressler, S. 2017. Index Collectorum Herbarii Senckenbergiani (FR) - collector’s list of the Frankfurt Herbarium. p. 197.

Doyle, 1987, A rapid DNA isolation method for small quantities of fresh tissues, Phytochem. Bull., 19, 11

Harvey, 1834, Notice of a collection of algae, communicated to Dr. Hooker by the late Mrs. Charles Telfair, from “Cap Malheureux”, in the Mauritius; with descriptions of some new and little known species, J. Bot., 1, 147

Hommersand, M.H. & Fredericq, S., 2003. Biogeography of the marine red algae of the South African West Coast: a molecular approach, in A. Chapman, R. Anderson, V., Vreeland, & Davison, I. (eds.). Proceedings of the International Seaweed Symposium 17, Oxford University Press, Oxford, pp. 325-336.

Kuntze, O. 1891. Revisio generum plantarum, Pars II. Leipzig, Lon- don, Milano, New York, Paris: Arthur Felix, Dulau & Co., U. Hoepli, Gust. A. Schechert, Charles Klincksierck. pp. 375-1011.

Miller, M.A., Pfeiffer, W., Schwartz, T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA. pp. 1-8. doi: 10.1109/GCE.2010.5676129.

Price, 1992, Seaweeds of the western coast of tropical Africa and adjacent islands: a critical assessment. IV. Rhodophyta (Florideae) 3. Genera H-K, Bull. Br. Mus. Nat. Hist. Bot., 22, 123

Rambaut, A., 2017. FigTree-version 1.4. 3, a graphical viewer of phylogenetic trees. http://tree.bio.ed.ac.uk/software/figtree/.

Setchell, W.A., Gardner, N.L. 1924. XXIX Expedition of the California Academy of Sciences to the Gulf of California in 1921. The marine algae. Proc. Calif. Acad. Sci, 4th ser 12, 695-949.

Thiers, B. 2022 [continuously updated]) Index Herbariorum: a global directory of public herbaria and associated staff. New York Botanical Garden’s Virtual Herbarium. Available at: http://sweetgum.nybg.org/ih/ (searched on November 2022).

Turland, N.J., Wiersema, J.H., Barrie, F.R. et al. 2018: International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017. Regnum Vegetabile 159. Glashütten: Koeltz Botanical Books. https://doi.org/10.12705/Code.2018.

Setchell, W.A. 1924. American Samoa. Publications of the Carnegie Institution of Washington, 20: 275 pp.

Masuda, M., Yamagishi, Y., Chiang, Y. M., Lewmanomont, K., Xia, B. M. 1997. Overview of Hypnea (Rhodophyta, Hypneaceae). In Abbott, I. A. [Ed.] Taxonomy of Economic Seaweeds, Vol. 6. California Sea Grant College, University of California, La Jolla, California, pp. 127–33.