Morphological evolution and classification of the red algal order Ceramiales inferred using plastid phylogenomics

Abascal, 2010, TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations, Nucleic Acids Res., 38, W7, 10.1093/nar/gkq291

Athanasiadis, 1996, Morphology and classification of the Ceramioideae (Rhodophyta) based on phylogenetic principles, Opera Bot., 127, 1

Athanasiadis, 2016, vol. II

Avise, 1999, Proposal for a standardized temporal scheme of biological classification for extant species, Proc. Natl Acad. Sci. USA, 96, 7358, 10.1073/pnas.96.13.7358

Bory de St. Vincent, 1828, Botanique, Cryptogamie, 97

Choi, 2002, Phylogenetic analyses of anatomical and nuclear SSU rDNA sequence data indicate that the Dasyaceae and Delesseriaceae (Ceramiales, Rhodophyta) are polyphyletic, Eur. J. Phycol., 37, 551, 10.1017/S0967026202003967

Choi, 2008, Phylogenetic relationships among lineages of the Ceramiaceae (Ceramiaes, Rhodophyta) based on nuclear small subunit rDNA sequence data, J. Phycol., 44, 1033, 10.1111/j.1529-8817.2008.00554.x

Costa, 2016, Chloroplast genomes as a tool to resolve red algal phylogenies: a case study in the Nemaliales, BMC Evol. Biol., 16, 205, 10.1186/s12862-016-0772-3

Cremen, 2016, Taxonomic revision of Halimeda (Bryopsidales, Chlorophyta) in south-western Australia, Austral. Syst. Bot., 29, 41, 10.1071/SB15043

De Toni, G.B., 1900. Sylloge algarum omnium hucusque cognitarum, vol. IV. Florideae. Sectio II. Sumptibus auctoris, Patavii [Padova], pp. [i–iv], 387–774 + 775–776 [Index].

Díaz-Tapia, 2011, Sexual structures in Ptilothamnion sphaericum and Pterosiphonia complanata (Ceramiales, Rhodophyta) from the Atlantic Iberian Peninsula, Bot. Mar., 54, 35

Díaz-Tapia, 2017, Analysis of chloroplast genomes and a supermatrix inform reclassification of the Rhodomelaceae (Rhodophyta), J. Phycol., 53, 920, 10.1111/jpy.12553

Doyle, 1987, A rapid DNA isolation procedure for small quantities of fresh leaf tissue, Phytochem. Bull., 19, 11

Falkenberg, 1901

Felsenstein, 1985, Phylogenies and the comparative method, Am. Nat., 125, 1, 10.1086/284325

Giribet, 2016, The meaning of categorical ranks in evolutionary biology, Org. Divers. Evol., 16, 427, 10.1007/s13127-016-0263-9

Guiry, 2019

Harmon, 2008, GEIGER: investigating evolutionary radiations, Bioinformatics, 24, 129, 10.1093/bioinformatics/btm538

Hennig, 1966

Hommersand, 1963, The morphology and classification of some Ceramiaceae and Rhodomelaceae, Univ. Calif. Publ. Bot., 35, 165

Hurd, 2014, 545

Iha, 2018, Organellar genomics: a useful tool to study evolutionary relationships and molecular evolution in Gracilariaceae (Rhodophyta), J. Phycol., 54, 775, 10.1111/jpy.12765

Katoh, 2013, MAFFT multiple sequence alignment software version 7: improvements in performance and usability, Mol. Biol. Evol., 30, 772, 10.1093/molbev/mst010

Kocot, 2018, Phylogenomics offers resolution of major tunicate relationships, Molec. Phylogen. Evol., 121, 166, 10.1016/j.ympev.2018.01.005

Kraichak, 2017, A temporal banding approach for consistent taxonomic ranking above the species level, Sci. Rep., 7, 2297, 10.1038/s41598-017-02477-7

Kützing, 1843

Kylin, 1956

Lamouroux, 1813, Essai sur les genres de la famille des thalassiophytes non articulées, Ann. Mus. Hist. Nat. Paris, 20

Lin, 2001, Systematics of the Delesseriaceae (Ceramiales, Rhodophyta) based on large subunit rDNA and rbcL sequences, including the Phycodryoideae, subfam. nov, J. Phycol., 37, 881, 10.1046/j.1529-8817.2001.01012.x

Littler, 1980, The evolution of thallus form and survival strategies in benthic marine macroalgae: field and laboratory tests of functional form model, Amer. Naturalist, 116, 25, 10.1086/283610

Lyngbye, 1819, 248

Maggs, 1993, Seaweeds of the British Isles, vol. 1

Marcelino, 2016, Evolutionary dynamics of chloroplast genomes in low light: a case study of the endolithic green alga Ostreobium quekettii, Genome Biol. Evol., 8, 2939, 10.1093/gbe/evw206

Nägeli, 1847, Die neuern Algensysteme und Versuch zur Begründung eines eigenen Systems der Algen und Florideen. Neue Denkschr, Allg. schweiz. Ges. ges. Naturw., 9, 1

Oliveira, 2018, High-throughput sequencing for algal systematics, E. J. Phycol., 53, 256, 10.1080/09670262.2018.1441446

Oltmanns, 1904

Pasella, 2019, The phylogenetic position of the morphologically unusual Pleurostichidium falkenbergii (Rhodomelaceae, Rhodophyta) based on plastid phylogenomics, Phycologia, 10.1080/00318884.2019.1574462

Preuss, 2017, Red algal parasites: a synopsis of described species, their hosts, distinguishing characters and areas for continued research, Bot. Mar., 60, 1, 10.1515/bot-2016-0044

Preuss, 2019, Development of the red algal parasite Vertebrata aterrimophila sp. nov. (Rhodomelaceae, Ceramiales) from New Zealand, E. J. Phycol., 54, 175, 10.1080/09670262.2018.1536284

Core Team, 2013

Revell, 2011, phytools: an R package for phylogenetic comparative biology (and other things), Meth.. Ecol. Evol., 3, 217, 10.1111/j.2041-210X.2011.00169.x

Rosenberg, 1933, Zur Anatomie und Entwicklungsgeschichte von Dasya arbuscula, Bot. Not., 1933, 535

Salomaki, 2019, Molecular phylogenetics supports a clade of red algal parasites retaining native plastids: taxonomy and terminology revised, J. Phycol., 55, 279, 10.1111/jpy.12823

Saunders, 2004, Assessing red algal supraordinal diversity and taxonomy in the context of contemporary systematic data, Amer. J. Bot., 91, 1494, 10.3732/ajb.91.10.1494

Saunders, 2016, Multigene analyses resolve early diverging lineages in the Rhodymeniophycidae (Florideophyceae, Rhodphyta), J. Phycol., 52, 505, 10.1111/jpy.12426

Saunders, 2018, Phylogenetic analyses of transcriptome data resolve familial assignments for genera of the red-algal Acrochaetiales-Palmariales Complex (Nemaliophycidae), Mol. Phylogenet. Evol., 119, 151, 10.1016/j.ympev.2017.11.002

Sigwart, 2017, How big is a genus? Towards a nomothetic systematics, Zool. J. Linn. Soc., 183, 237, 10.1093/zoolinnean/zlx059

Sonder, 1845, Nova algarum genera et species, quas in itinere ad oras occidentales Novae Hollandiae, collegit L, Priess, Ph. Dr. Bot. Zeitung, 3, 49

Stamatakis, 2014, RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, 30, 1312, 10.1093/bioinformatics/btu033

Sun, 2018, Plastome phylogenomics of the early-diverging eudicot family Berberidaceae, Molec. Phylogen. Evol., 128, 203, 10.1016/j.ympev.2018.07.021

Verbruggen, 2010, Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life, BMC Evol. Biol., 10, 16, 10.1186/1471-2148-10-16

Verbruggen, 2015, The plastid genome of the red alga Laurencia, J. Phycol., 51, 586, 10.1111/jpy.12297

Withall, 2007, Combining small and large subunit ribosomal DNA genes to resolve relationships among orders of the Rhodymeniophycidae (Rhodophyta): recognition of the Acrosymphytales ord. nov. and Sebdeniales ord. nov., Eur. J. Phycol., 41, 379, 10.1080/09670260600914097

Wollaston, 1974, Sexual reproduction in Ballia mariana Harvey and Ballia ballioides (Sonder) Wollaston (Ceramiaceae, Rhodophyta), Phycologia, 13, 21, 10.2216/i0031-8884-13-1-21.1

Womersley, 1959, Studies on the Sarcomenia group of the Rhodophyta, Austral. J. Bot., 7, 168, 10.1071/BT9590168

Womersley, 1965, The morphology and relationships of Sonderella (Rhodophyta, Rhodomelaceae), Austral. J. Bot., 13, 435, 10.1071/BT9650435

Womersley, 1998

Womersley, 2003

Wynne, 2002, Dipterocladia arabiensis sp. nov. (Dasyaceae, Rhodophyta) from the Sultanate of Oman, Bot. Mar., 45, 77, 10.1515/BOT.2002.010

Wynne, 2013

Xiao, 2006, On the morphological and ecological history of Proterozoic macroalgae, 57

Yang, 2016, Divergence time estimates and the evolution of major lineages in the florideophyte red algae, Sci. Rep., 6, 21361, 10.1038/srep21361

Zanardini, 1843