Wiley

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micro‐checker: phần mềm nhận diện và sửa lỗi kiểu hình gen trong dữ liệu microsatellite Dịch bởi AI
Wiley - Tập 4 Số 3 - Trang 535-538 - 2004
Cock van Oosterhout, William F. Hutchinson, D. Wills, Peter Shipley
Tóm tắtPhân hủy DNA, nồng độ DNA thấp và đột biến vị trí mồi có thể dẫn đến việc phân công sai kiểu hình gen microsatellite, gây sai lệch cho các phân tích di truyền học quần thể. micro‐checker là phần mềm dựa trên giao diện windows® để kiểm tra kiểu hình gen của microsatellite từ các quần thể lưỡng bội. Chươ...... hiện toàn bộ
#Genotyping errors #Microsatellite data #DNA degradation #Population genetics #Null alleles #Large allele dropout #Stutter peaks #Microchecker #Genetic analysis tools
Polymorphic microsatellite loci for the trematode Diplostomum pseudospathaceum
Wiley - Tập 4 Số 4 - Trang 577-579 - 2004
Thorsten B. H. Reusch, Gisep Rauch, Martin Kalbe
AbstractWe present primers for five polymorphic microsatellite loci in the eye fluke Diplostomum pseudospathaceum (Trematoda), a widely distributed parasite with a complex life cycle used as a model for parasitology and fish immunology. The loci were identified using a GA/CT‐enriched genomic library by subtractive hybridization with magne...... hiện toàn bộ
hierfstat, a package for r to compute and test hierarchical F‐statistics
Wiley - Tập 5 Số 1 - Trang 184-186 - 2005
Jérôme Goudet
AbstractThe package hierfstat for the statistical software r, created by the R Development Core Team, allows the estimate of hierarchical F‐statistics from a hierarchy with any numbers of levels. In addition, it allows testing the statistical significance of population differentiation for these differ...... hiện toàn bộ
A method to size DNA fragments from 50 to 800 bp on a DNA analyser
Wiley - Tập 5 Số 4 - Trang 969-970 - 2005
Peter G. Avis, Kevin A. Feldheim
AbstractWe present a method to size DNA fragments from 50 to 800 bp on a DNA analyser using an alternative size standard (X‐Rhodamine MapMarker 1000) run on a capillary electrophoresis system (Applied Biosystem's 3730 DNA Analyser). This method avoids several limitations imposed by manufacturer‐developed size standards, instruments and software and offers a more ro...... hiện toàn bộ
genotypeandgenodive: two programs for the analysis of genetic diversity of asexual organisms
Wiley - Tập 4 Số 4 - Trang 792-794 - 2004
Patrick G. Meirmans, Peter H. van Tienderen
AbstractInvestigating diversity in asexual organisms using molecular markers involves the assignment of individuals to clonal lineages and the subsequent analysis of clonal diversity. Assignment is possible using a distance matrix in combination with a user‐specified threshold, defined as the maximum distance between two individuals that are considered to belong to...... hiện toàn bộ
Microsatellite markers for the Sydney rock oyster, Saccostrea glomerata, a commercially important bivalve in southeastern Australia
Wiley - Tập 6 Số 3 - Trang 856-858 - 2006
Sam C. Banks, Maxine P. Piggott, David A. Raftos, Luciano B. Beheregaray
AbstractThe Sydney rock oyster (Saccostrea glomerata) is a commercially important bivalve in southeastern Australian. We describe the isolation and characterization of nine microsatellite markers for S. glomerata. The loci are highly polymorphic, with between five and 20 alleles identified among 30 individuals. ...... hiện toàn bộ
Indices of multilocus linkage disequilibrium
Wiley - Tập 1 Số 1-2 - Trang 101-102 - 2001
Paul‐Michael Agapow, Austin Burt
AbstractLinkage disequilibrium is an ubiquitous biological phenomenon. However a common metric for disequilibrium – the index of association or IA– is dependent on sample size. In this paper we present a modification of IA that removes this dependency. This method has been implemented in a software package.
Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study
Wiley - Tập 7 Số 5 - Trang 747-756 - 2007
Chibiao Chen, Éric Durand, Florence Forbes, Olivier François
AbstractOn the basis of simulated data, this study compares the relative performances of the Bayesian clustering computer programs structure, geneland, geneclust and a new program named tess. While these four programs can detect population genetic structure from multilocus genotypes, only t...... hiện toàn bộ
Isolation and characterization of microsatellite loci in the striped mullet, Mugil cephalus
Wiley - Tập 5 Số 2 - Trang 323-326 - 2005
Emanuela Miggiano, Russell E. Lyons, Yutao Li, Leanne Dierens, D. Crosetti, Luís Gil de Sola
AbstractForty‐three microsatellites were isolated from grey mullet (Mugil cephalus) of Mediterranean origin using the standard enrichment methods followed by enhanced chemiluminescence for the rapid identification of clones containing microsatellites. Eleven microsatellites were characterized to assess genetic diversity of different popul...... hiện toàn bộ
bold: The Barcode of Life Data System (http://www.barcodinglife.org)
Wiley - Tập 7 Số 3 - Trang 355-364 - 2007
Sujeevan Ratnasingham, Paul D. N. Hebert
AbstractThe Barcode of Life Data System (bold) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. By assembling molecular, morphological and distributional data, it bridges a traditional bioinformatics chasm. bold is freely available to any researcher with interests in ...... hiện toàn bộ
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