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micro‐checker: phần mềm nhận diện và sửa lỗi kiểu hình gen trong dữ liệu microsatellite Dịch bởi AI
Wiley - Tập 4 Số 3 - Trang 535-538 - 2004
Cock van Oosterhout, William F. Hutchinson, D. Wills, Peter Shipley
Tóm tắtPhân hủy DNA, nồng độ DNA thấp và đột biến vị trí mồi có thể dẫn đến việc phân công sai kiểu hình gen microsatellite, gây sai lệch cho các phân tích di truyền học quần thể. micro‐checker là phần mềm dựa trên giao diện windows® để kiểm tra kiểu hình gen của microsatellite từ các quần thể lưỡng bội. Chươ...... hiện toàn bộ
#Genotyping errors #Microsatellite data #DNA degradation #Population genetics #Null alleles #Large allele dropout #Stutter peaks #Microchecker #Genetic analysis tools
Microsatellite markers for the Sydney rock oyster, Saccostrea glomerata, a commercially important bivalve in southeastern Australia
Wiley - Tập 6 Số 3 - Trang 856-858 - 2006
Sam C. Banks, Maxine P. Piggott, David A. Raftos, Luciano B. Beheregaray
AbstractThe Sydney rock oyster (Saccostrea glomerata) is a commercially important bivalve in southeastern Australian. We describe the isolation and characterization of nine microsatellite markers for S. glomerata. The loci are highly polymorphic, with between five and 20 alleles identified among 30 individuals. ...... hiện toàn bộ
bold: The Barcode of Life Data System (http://www.barcodinglife.org)
Wiley - Tập 7 Số 3 - Trang 355-364 - 2007
Sujeevan Ratnasingham, Paul D. N. Hebert
AbstractThe Barcode of Life Data System (bold) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. By assembling molecular, morphological and distributional data, it bridges a traditional bioinformatics chasm. bold is freely available to any researcher with interests in ...... hiện toàn bộ
Polymorphic microsatellite loci for the trematode Diplostomum pseudospathaceum
Wiley - Tập 4 Số 4 - Trang 577-579 - 2004
Thorsten B. H. Reusch, Gisep Rauch, Martin Kalbe
AbstractWe present primers for five polymorphic microsatellite loci in the eye fluke Diplostomum pseudospathaceum (Trematoda), a widely distributed parasite with a complex life cycle used as a model for parasitology and fish immunology. The loci were identified using a GA/CT‐enriched genomic library by subtractive hybridization with magne...... hiện toàn bộ
microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets
Wiley - Tập 3 Số 1 - Trang 167-169 - 2003
Daniel Dieringer, Christian Schlötterer
AbstractIn molecular ecology the analysis of large microsatellite data sets is becoming increasingly popular. Here we introduce a new software tool, which is specifically designed to facilitate the analysis of large microsatellite data sets. All common microsatellite summary statistics and distances can be calculated. Furthermore, the microsatellite analys...... hiện toàn bộ
Estimation and adjustment of microsatellite null alleles in nonequilibrium populations
Wiley - Tập 6 Số 1 - Trang 255-256 - 2006
Cock van Oosterhout, David Weetman, W. F. Hutchinson
AbstractNonamplified (null) alleles are a common feature of microsatellite genotyping and can bias estimates of allele and genotype frequencies, thereby hindering population genetic analyses. The frequency of microsatellite null alleles in diploid populations can be estimated for populations that are in Hardy–Weinberg equilibrium. However, many microsatellite data ...... hiện toàn bộ
hierfstat, a package for r to compute and test hierarchical F‐statistics
Wiley - Tập 5 Số 1 - Trang 184-186 - 2005
Jérôme Goudet
AbstractThe package hierfstat for the statistical software r, created by the R Development Core Team, allows the estimate of hierarchical F‐statistics from a hierarchy with any numbers of levels. In addition, it allows testing the statistical significance of population differentiation for these differ...... hiện toàn bộ
A method to size DNA fragments from 50 to 800 bp on a DNA analyser
Wiley - Tập 5 Số 4 - Trang 969-970 - 2005
Peter G. Avis, Kevin A. Feldheim
AbstractWe present a method to size DNA fragments from 50 to 800 bp on a DNA analyser using an alternative size standard (X‐Rhodamine MapMarker 1000) run on a capillary electrophoresis system (Applied Biosystem's 3730 DNA Analyser). This method avoids several limitations imposed by manufacturer‐developed size standards, instruments and software and offers a more ro...... hiện toàn bộ
genotypeandgenodive: two programs for the analysis of genetic diversity of asexual organisms
Wiley - Tập 4 Số 4 - Trang 792-794 - 2004
Patrick G. Meirmans, Peter H. van Tienderen
AbstractInvestigating diversity in asexual organisms using molecular markers involves the assignment of individuals to clonal lineages and the subsequent analysis of clonal diversity. Assignment is possible using a distance matrix in combination with a user‐specified threshold, defined as the maximum distance between two individuals that are considered to belong to...... hiện toàn bộ
Indices of multilocus linkage disequilibrium
Wiley - Tập 1 Số 1-2 - Trang 101-102 - 2001
Paul‐Michael Agapow, Austin Burt
AbstractLinkage disequilibrium is an ubiquitous biological phenomenon. However a common metric for disequilibrium – the index of association or IA– is dependent on sample size. In this paper we present a modification of IA that removes this dependency. This method has been implemented in a software package.
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