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hp‐rare 1.0: a computer program for performing rarefaction on measures of allelic richness
Wiley - Tập 5 Số 1 - Trang 187-189 - 2005
Steven T. Kalinowski
AbstractThe number of alleles in a sample (allelic richness) is a fundamental measure of genetic diversity. However, this diversity measure has been difficult to use because large samples are expected to contain more alleles than small samples. The statistical technique of rarefaction compensates for this sampling disparity. Here I introduce a computer program that...... hiện toàn bộ
micro‐checker: phần mềm nhận diện và sửa lỗi kiểu hình gen trong dữ liệu microsatellite Dịch bởi AI
Wiley - Tập 4 Số 3 - Trang 535-538 - 2004
Cock van Oosterhout, William F. Hutchinson, D. Wills, Peter Shipley
Tóm tắtPhân hủy DNA, nồng độ DNA thấp và đột biến vị trí mồi có thể dẫn đến việc phân công sai kiểu hình gen microsatellite, gây sai lệch cho các phân tích di truyền học quần thể. micro‐checker là phần mềm dựa trên giao diện windows® để kiểm tra kiểu hình gen của microsatellite từ các quần thể lưỡng bội. Chươ...... hiện toàn bộ
#Genotyping errors #Microsatellite data #DNA degradation #Population genetics #Null alleles #Large allele dropout #Stutter peaks #Microchecker #Genetic analysis tools
genotypeandgenodive: two programs for the analysis of genetic diversity of asexual organisms
Wiley - Tập 4 Số 4 - Trang 792-794 - 2004
Patrick G. Meirmans, Peter H. van Tienderen
AbstractInvestigating diversity in asexual organisms using molecular markers involves the assignment of individuals to clonal lineages and the subsequent analysis of clonal diversity. Assignment is possible using a distance matrix in combination with a user‐specified threshold, defined as the maximum distance between two individuals that are considered to belong to...... hiện toàn bộ
A method to size DNA fragments from 50 to 800 bp on a DNA analyser
Wiley - Tập 5 Số 4 - Trang 969-970 - 2005
Peter G. Avis, Kevin A. Feldheim
AbstractWe present a method to size DNA fragments from 50 to 800 bp on a DNA analyser using an alternative size standard (X‐Rhodamine MapMarker 1000) run on a capillary electrophoresis system (Applied Biosystem's 3730 DNA Analyser). This method avoids several limitations imposed by manufacturer‐developed size standards, instruments and software and offers a more ro...... hiện toàn bộ
champuru 1.0: a computer software for unraveling mixtures of two DNA sequences of unequal lengths
Wiley - Tập 7 Số 6 - Trang 974-977 - 2007
Jean‐François Flot
Abstract champuru is an interactive, user‐friendly web software that facilitates the deconvolution of mixed chromatograms obtained when sequencing directly mixtures of two DNA templates of unequal lengths. The program takes as input two strings of characters describing the forward and reverse chromatograms as obtained by direct sequencing and ret...... hiện toàn bộ
Isolation and characterization of polymorphic microsatellites in olive (Olea europaea L.) and their transferability to other genera in the Oleaceae
Wiley - Tập 2 Số 3 - Trang 265-267 - 2002
Raúl de la Rosa, C. M. James, K. R. Tobutt
AbstractSeven polymorphic microsatellites were developed in olive. Six of them came from a genomic library enriched for GA and CA repeat sequences. They showed single locus polymorphism in a set of 23 olive cultivars (from six to nine alleles per locus). Three different pairs of loci were sufficient to discriminate all cultivars. The other polymorphic primer pair w...... hiện toàn bộ
spagedi: a versatile computer program to analyse spatial genetic structure at the individual or population levels
Wiley - Tập 2 Số 4 - Trang 618-620 - 2002
Olivier J. Hardy, Xavier Vekemans
Abstract spag e d i version 1.0 is a software primarily designed to characterize the spatial genetic structure of mapped individuals or populations using genotype data of codominant markers. It computes various statistics describing genetic relatedness or differentiation between individuals or popu...... hiện toàn bộ
Microsatellite markers for the Sydney rock oyster, Saccostrea glomerata, a commercially important bivalve in southeastern Australia
Wiley - Tập 6 Số 3 - Trang 856-858 - 2006
Sam C. Banks, Maxine P. Piggott, David A. Raftos, Luciano B. Beheregaray
AbstractThe Sydney rock oyster (Saccostrea glomerata) is a commercially important bivalve in southeastern Australian. We describe the isolation and characterization of nine microsatellite markers for S. glomerata. The loci are highly polymorphic, with between five and 20 alleles identified among 30 individuals. ...... hiện toàn bộ
microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets
Wiley - Tập 3 Số 1 - Trang 167-169 - 2003
Daniel Dieringer, Christian Schlötterer
AbstractIn molecular ecology the analysis of large microsatellite data sets is becoming increasingly popular. Here we introduce a new software tool, which is specifically designed to facilitate the analysis of large microsatellite data sets. All common microsatellite summary statistics and distances can be calculated. Furthermore, the microsatellite analys...... hiện toàn bộ
Development and transportability across Prunus species of 42 polymorphic almond microsatellites
Wiley - Tập 5 Số 3 - Trang 531-535 - 2005
Mourad Mnejja, Jordi García-Más, Werner Howad, Pere Arús
AbstractWe report 47 new simple sequence repeats (SSRs) obtained from a CT/AG enriched genomic library of almond cv. Texas (syn. Mission). Forty‐two of them were polymorphic in a sample of eight almond cultivars and 31 of these were single‐locus. The average values of the number of alleles per locus (6.6), and mean observed (65%) and expected (76%) heterozygosities...... hiện toàn bộ
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