Wiley

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micro‐checker: phần mềm nhận diện và sửa lỗi kiểu hình gen trong dữ liệu microsatellite Dịch bởi AI
Wiley - Tập 4 Số 3 - Trang 535-538 - 2004
Cock van Oosterhout, William F. Hutchinson, D. Wills, Peter Shipley
Tóm tắtPhân hủy DNA, nồng độ DNA thấp và đột biến vị trí mồi có thể dẫn đến việc phân công sai kiểu hình gen microsatellite, gây sai lệch cho các phân tích di truyền học quần thể. micro‐checker là phần mềm dựa trên giao diện windows® để kiểm tra kiểu hình gen của microsatellite từ các quần thể lưỡng bội. Chương trình hỗ trợ nhận diện lỗi kiểu hình gen do các allele không khuếch đại (allele ẩn), hi... hiện toàn bộ
#Genotyping errors #Microsatellite data #DNA degradation #Population genetics #Null alleles #Large allele dropout #Stutter peaks #Microchecker #Genetic analysis tools
genotypeandgenodive: two programs for the analysis of genetic diversity of asexual organisms
Wiley - Tập 4 Số 4 - Trang 792-794 - 2004
Patrick G. Meirmans, Peter H. van Tienderen
AbstractInvestigating diversity in asexual organisms using molecular markers involves the assignment of individuals to clonal lineages and the subsequent analysis of clonal diversity. Assignment is possible using a distance matrix in combination with a user‐specified threshold, defined as the maximum distance between two individuals that are considered to belong to the same clonal lineage. Analysi... hiện toàn bộ
Microsatellite markers for the Sydney rock oyster, Saccostrea glomerata, a commercially important bivalve in southeastern Australia
Wiley - Tập 6 Số 3 - Trang 856-858 - 2006
Sam C. Banks, Maxine P. Piggott, David A. Raftos, Luciano B. Beheregaray
AbstractThe Sydney rock oyster (Saccostrea glomerata) is a commercially important bivalve in southeastern Australian. We describe the isolation and characterization of nine microsatellite markers for S. glomerata. The loci are highly polymorphic, with between five and 20 alleles identified among 30 individuals. Expected heterozygosity levels ranged from 0.608 to 0.936. The markers will be used to ... hiện toàn bộ
Indices of multilocus linkage disequilibrium
Wiley - Tập 1 Số 1-2 - Trang 101-102 - 2001
Paul‐Michael Agapow, Austin Burt
AbstractLinkage disequilibrium is an ubiquitous biological phenomenon. However a common metric for disequilibrium – the index of association or IA– is dependent on sample size. In this paper we present a modification of IA that removes this dependency. This method has been implemented in a software package.
Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study
Wiley - Tập 7 Số 5 - Trang 747-756 - 2007
Chibiao Chen, Éric Durand, Florence Forbes, Olivier François
AbstractOn the basis of simulated data, this study compares the relative performances of the Bayesian clustering computer programs structure, geneland, geneclust and a new program named tess. While these four programs can detect population genetic structure from multilocus genotypes, only the last three ones include simultaneous analysis from geographical data. The programs are compared with respe... hiện toàn bộ
Isolation and characterization of microsatellite loci in the striped mullet, Mugil cephalus
Wiley - Tập 5 Số 2 - Trang 323-326 - 2005
Emanuela Miggiano, Russell E. Lyons, Yutao Li, Leanne Dierens, D. Crosetti, Luís Gil de Sola
AbstractForty‐three microsatellites were isolated from grey mullet (Mugil cephalus) of Mediterranean origin using the standard enrichment methods followed by enhanced chemiluminescence for the rapid identification of clones containing microsatellites. Eleven microsatellites were characterized to assess genetic diversity of different populations surrounding the island of Sardinia in Italy. The vers... hiện toàn bộ
bold: The Barcode of Life Data System (http://www.barcodinglife.org)
Wiley - Tập 7 Số 3 - Trang 355-364 - 2007
Sujeevan Ratnasingham, Paul D. N. Hebert
AbstractThe Barcode of Life Data System (bold) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. By assembling molecular, morphological and distributional data, it bridges a traditional bioinformatics chasm. bold is freely available to any researcher with interests in DNA barcoding. By providing specialized services, it aids the assembly ... hiện toàn bộ
Polymorphic microsatellite loci for the trematode Diplostomum pseudospathaceum
Wiley - Tập 4 Số 4 - Trang 577-579 - 2004
Thorsten B. H. Reusch, Gisep Rauch, Martin Kalbe
AbstractWe present primers for five polymorphic microsatellite loci in the eye fluke Diplostomum pseudospathaceum (Trematoda), a widely distributed parasite with a complex life cycle used as a model for parasitology and fish immunology. The loci were identified using a GA/CT‐enriched genomic library by subtractive hybridization with magnetic particles. All five loci were highly polymorphic, displa... hiện toàn bộ
microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets
Wiley - Tập 3 Số 1 - Trang 167-169 - 2003
Daniel Dieringer, Christian Schlötterer
AbstractIn molecular ecology the analysis of large microsatellite data sets is becoming increasingly popular. Here we introduce a new software tool, which is specifically designed to facilitate the analysis of large microsatellite data sets. All common microsatellite summary statistics and distances can be calculated. Furthermore, the microsatellite analyser (msa) software offers an improved metho... hiện toàn bộ
Isolation and characterization of polymorphic microsatellites in olive (Olea europaea L.) and their transferability to other genera in the Oleaceae
Wiley - Tập 2 Số 3 - Trang 265-267 - 2002
Raúl de la Rosa, C. M. James, K. R. Tobutt
AbstractSeven polymorphic microsatellites were developed in olive. Six of them came from a genomic library enriched for GA and CA repeat sequences. They showed single locus polymorphism in a set of 23 olive cultivars (from six to nine alleles per locus). Three different pairs of loci were sufficient to discriminate all cultivars. The other polymorphic primer pair was designed from a published sequ... hiện toàn bộ
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