Solid-state magic-angle spinning NMR of membrane proteins and protein–ligand interactions
Tài liệu tham khảo
Akbey, 2010, Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy, J. Biomol. NMR, 46, 67, 10.1007/s10858-009-9369-0
Aquilina, 2003, Polydispersity of a mammalian chaperone: mass spectrometry reveals the population of oligomers in alpha B-crystallin, Proc. Natl. Acad. Sci. U. S. A., 100, 10611, 10.1073/pnas.1932958100
Bajaj, 2009, Functional and shunt states of bacteriorhodopsin resolved by 250GHz dynamic nuclear polarization-enhanced solid-state NMR, Proc. Natl. Acad. Sci. U. S. A., 106, 9244, 10.1073/pnas.0900908106
Baldus, 1998, Cross polarization in the tilted frame: assignment and spectral simplification in heteronuclear spin systems, Mol. Phys., 95, 1197, 10.1080/00268979809483251
Becker, 2008, A sequential assignment procedure for proteins that have intermediate line widths in MAS NMR spectra: amyloid fibrils of human CA150.WW2, Chembiochemistry, 9, 1946, 10.1002/cbic.200700706
Bennardini, 1992, Alpha-B-crystallin in cardiac tissue – association with actin and desmin filaments, Circ. Res., 71, 288, 10.1161/01.RES.71.2.288
Bourne, 2005, Crystal structure of a Cbtx–AChBP complex reveals essential interactions between snake alpha-neurotoxins and nicotinic receptors, EMBO J., 24, 1512, 10.1038/sj.emboj.7600620
Bukau, 2006, Molecular chaperones and protein quality control, Cell, 125, 443, 10.1016/j.cell.2006.04.014
Castellani, 2002, Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy, Nature, 420, 98, 10.1038/nature01070
Davidson, 2008, Structure, function, and evolution of bacterial ATP-binding cassette systems, Microbiol. Mol. Biol. Rev., 72, 317, 10.1128/MMBR.00031-07
Dean, 2003, Muscarinic receptors in schizophrenia, Curr. Mol. Med., 3, 419, 10.2174/1566524033479654
Dellisanti, 2007, Crystal structure of the extracellular domain of nAChR alpha1 bound to alpha-bungarotoxin at 1.94Å resolution, Nat. Neurosci., 10, 953, 10.1038/nn1942
Ecroyd, 2009, Crystallin proteins and amyloid fibrils, Cell. Mol. Life Sci., 66, 62, 10.1007/s00018-008-8327-4
Eitinger, 2011, Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions, FEMS Microbiol. Rev., 35, 3, 10.1111/j.1574-6976.2010.00230.x
Etzkorn, 2007, Secondary structure, dynamics, and topology of a seven-helix receptor in native membranes, studied by solid-state NMR spectroscopy, Angew. Chem. Int. Ed., 46, 459, 10.1002/anie.200602139
Ferguson, 2006, General structural motifs of amyloid protofilaments, Proc. Natl. Acad. Sci. U. S. A., 103, 16248, 10.1073/pnas.0607815103
Fleischer, 2005, Identification of a gene cluster encoding an arginine ATP-binding-cassette transporter in the genome of the thermophilic Gram-positive bacterium Geobacillus stearothermophilus strain DSMZ 13240, Microbiology, 151, 835, 10.1099/mic.0.27591-0
Fossi, 2005, SOLARIA: a protocol for automated cross-peak assignment and structure calculation for solid-state magic-angle spinning NMR spectroscopy, Angew. Chem. Int. Ed., 44, 6151, 10.1002/anie.200501884
Franks, 2005, Magic-angle spinning solid-state NMR spectroscopy of the beta 1 immunoglobulin binding domain of protein G (GB1): N-15 and C-13 chemical shift assignments and conformational analysis, J. Am. Chem. Soc., 127, 12291, 10.1021/ja044497e
Goldstein, 2003, Cytosolic beta-amyloid deposition and supranuclear cataracts in lenses from people with Alzheimer's disease, Lancet, 361, 1258, 10.1016/S0140-6736(03)12981-9
Golovanov, 1993, Two-dimensional 1H-NMR study of the spatial structure of neurotoxin II from Naja naja oxiana, Eur. J. Biochem., 213, 1213, 10.1111/j.1432-1033.1993.tb17872.x
Haslbeck, 2005, Some like it hot: the structure and function of small heat-shock proteins, Nat. Struct. Mol. Biol., 12, 842, 10.1038/nsmb993
Hediger, 1994, Nmr cross-polarization by adiabatic passage through the Hartmann–Hahn condition (Aphh), Chem. Phys. Lett., 223, 283, 10.1016/0009-2614(94)00470-6
Heise, 2005, Molecular-level secondary structure, polymorphism, and dynamics of full-length alpha-synuclein fibrils studied by solid-state NMR, Proc. Natl. Acad. Sci. U. S. A., 102, 15871, 10.1073/pnas.0506109102
Higman, 2009, Assigning large proteins in the solid state: a MAS NMR resonance assignment strategy using selectively and extensively C-13-labelled proteins, J. Biomol. NMR, 44, 245, 10.1007/s10858-009-9338-7
Hiller, 2008, [2,3-C-13]-labeling of aromatic residues-getting a head start in the magic-angle-spinning NMR assignment of membrane proteins, J. Am. Chem. Soc., 130, 10.1021/ja077589n
Hucho, 2001, Ligand-gated ion channels, Angew. Chem. Int. Ed., 40, 3100, 10.1002/1521-3773(20010903)40:17<3100::AID-ANIE3100>3.0.CO;2-A
Igumenova, 2004, Assignments of carbon NMR resonances for microcrystalline ubiquitin, J. Am. Chem. Soc., 126, 6720, 10.1021/ja030547o
Ishii, 2006, Muscarinic acetylcholine receptors, Curr. Pharm. Des., 12, 3573, 10.2174/138161206778522056
Iwata, 2006, 3D structure of amyloid protofilaments of beta(2)-microglobulin fragment probed by solid-state NMR, Proc. Natl. Acad. Sci. U. S. A., 103, 18119, 10.1073/pnas.0607180103
Jehle, 2010, Solid-state NMR and SAXS studies provide a structural basis for the activation of alpha B-crystallin oligomers, Nat. Struct. Mol. Biol., 17, 10.1038/nsmb.1891
Jehle, 2009, Alpha B-crystallin: a hybrid solid-state/solution-state NMR investigation reveals structural aspects of the heterogeneous oligomer, J. Mol. Biol., 385, 1481, 10.1016/j.jmb.2008.10.097
Kato, 2001, Ser-59 is the major phosphorylation site in alpha B-crystallin accumulated in the brains of patients with Alexander's disease, J. Neurochem., 76, 730, 10.1046/j.1471-4159.2001.00038.x
Kawamata, 2011, Stimulating nicotinic receptors trigger multiple pathways attenuating cytotoxicity in models of Alzheimer's and Parkinson's diseases, J. Alzheimers Dis., 24, 95, 10.3233/JAD-2011-110173
Krabben, 2009, Loop 3 of short neurotoxin II is an additional interaction site with membrane-bound nicotinic acetylcholine receptor as detected by solid-state NMR spectroscopy, J. Mol. Biol., 390, 662, 10.1016/j.jmb.2009.05.016
Lange, 2006, Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR, Nature, 440, 959, 10.1038/nature04649
Lange, 2010, A MAS NMR study of the bacterial ABC transporter ArtMP, Chembiochemistry, 11, 547, 10.1002/cbic.200900472
LeMaster, 1996, Dynamical mapping of E. coli thioredoxin via C-13 NMR relaxation analysis, J. Am. Chem. Soc., 118, 9255, 10.1021/ja960877r
Li, 2007, Partial C-13 and N-15 chemical-shift assignments of the disulfide-bond-forming enzyme DsbB by 3D magic-angle spinning NMR spectroscopy, Chembiochemistry, 8, 434, 10.1002/cbic.200600484
Liu, 2006, A novel alpha B-crystallin mutation associated with autosomal dominant congenital lamellar cataract, Invest. Ophthalmol. Vis. Sci., 47, 1069, 10.1167/iovs.05-1004
Loquet, 2011, 13C spin dilution for simplified and complete solid-state NMR resonance assignment of insoluble biological assemblies, J. Am. Chem. Soc., 133, 4722, 10.1021/ja200066s
Luca, 2003, The conformation of neurotensin bound to its G protein-coupled receptor, Proc. Natl. Acad. Sci. U. S. A., 100, 10706, 10.1073/pnas.1834523100
Luhrs, 2005, 3D structure of Alzheimer's amyloid-beta(1–42) fibrils, Proc. Natl. Acad. Sci. U. S. A., 102, 17342, 10.1073/pnas.0506723102
Lyukmanova, 2011, NMR structure and action on nicotinic acetylcholine receptors of water-soluble domain of human LYNX1, J. Biol. Chem., 286, 10618, 10.1074/jbc.M110.189100
Miwa, 1999, lynx1, an endogenous toxin-like modulator of nicotinic acetylcholine receptors in the mammalian CNS, Neuron, 23, 105, 10.1016/S0896-6273(00)80757-6
Nielsen, 2009, Unique identification of supramolecular structures in amyloid fibrils by solid-state NMR spectroscopy, Angew. Chem. Int. Ed., 48, 2118, 10.1002/anie.200804198
Ousman, 2007, Protective and therapeutic role for alpha B-crystallin in autoimmune demyelination, Nature, 448, 474, 10.1038/nature05935
Pauli, 2000, Sample optimization and identification of signal patterns of amino acid side chains in 2D RFDR spectra of the alpha-spectrin SH3 domain, J. Magn. Reson., 143, 411, 10.1006/jmre.2000.2029
Petkova, 2002, A structural model for Alzheimer's beta-amyloid fibrils based on experimental constraints from solid state NMR, Proc. Natl. Acad. Sci. U. S. A., 99, 16742, 10.1073/pnas.262663499
Rajasekaran, 2007, Human alpha B-crystallin mutation causes oxido-reductive stress and protein aggregation cardiomyopathy in mice, Cell, 130, 427, 10.1016/j.cell.2007.06.044
Ritter, 2005, Correlation of structural elements and infectivity of the HET-s prion, Nature, 435, 844, 10.1038/nature03793
Schiebler, 1978, Membranes rich in acetylcholine receptor: characterization and reconstitution to excitable membranes from exogenous lipids, Eur. J. Biochem., 85, 55, 10.1111/j.1432-1033.1978.tb12211.x
Selcen, 2003, Myofibrillar myopathy caused by novel dominant negative alpha B-crystallin mutations, Ann. Neurol., 54, 804, 10.1002/ana.10767
Sobolevsky, 2009, X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor, Nature, 462, 745, 10.1038/nature08624
Sonoda, 2010, Tricks of the trade used to accelerate high-resolution structure determination of membrane proteins, FEBS Lett., 584, 2539, 10.1016/j.febslet.2010.04.015
Sperling, 2010, Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA, J. Mol. Biol., 399, 268, 10.1016/j.jmb.2010.04.012
Tsetlin, 1999, Snake venom alpha-neurotoxins and other ‘three-finger’ proteins, Eur. J. Biochem., 264, 281, 10.1046/j.1432-1327.1999.00623.x
Tsetlin, 2009, Nicotinic acetylcholine receptors at atomic resolution, Curr. Opin. Pharmacol., 9, 306, 10.1016/j.coph.2009.03.005
Turano, 2010, NMR reveals pathway for ferric mineral precursors to the central cavity of ferritin, Proc. Natl. Acad. Sci. U. S. A., 107, 545, 10.1073/pnas.0908082106
van der Wel, 2006, Dynamic nuclear polarization of amyloidogenic peptide nanocrystals: GNNQQNY, a core segment of the yeast prion protein Sup35p, J. Am. Chem. Soc., 128, 10840, 10.1021/ja0626685
Van Horn, 2009, Solution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase, Science, 324, 1726, 10.1126/science.1171716
Van Noort, 1995, The small heat-shock protein alpha-B-crystallin as candidate autoantigen in multiple-sclerosis, Nature, 375, 798, 10.1038/375798a0
Williamson, 2007, The conformation of acetylcholine at its target site in the membrane-embedded nicotinic acetylcholine receptor, Proc. Natl. Acad. Sci. U. S. A., 104, 18031, 10.1073/pnas.0704785104