Biogeosciences
1726-4189
1726-4170
Đức
Cơ quản chủ quản: Copernicus Gesellschaft mbH , European Geosciences Union
Lĩnh vực:
Earth-Surface ProcessesEcology, Evolution, Behavior and Systematics
Phân tích ảnh hưởng
Thông tin về tạp chí
Biogeosciences (BG) is a not-for-profit international scientific journal dedicated to the publication and discussion of research articles, short communications, and review papers on all aspects of the interactions between the biological, chemical, and physical processes in terrestrial or extraterrestrial life with the geosphere, hydrosphere, and atmosphere. The objective of the journal is to cut across the boundaries of established sciences and achieve an interdisciplinary view of these interactions. Experimental, conceptual, and modelling approaches are welcome. With the above objective, Biogeosciences covers the following fields: biodiversity and ecosystem function; evolutionary ecology; environmental microbiology; biogeochemistry and global elemental cycles; biogeochemistry and gas exchange; plant–soil interactions; biomineralization, microbial weathering, and sedimentation; interactions between microbes, organic matter sediments, and rocks; biogeophysics; Earth system sciences and response to global changes; palaeogeobiology, including origin and evolution of life, evolution of the biosphere, sedimentary records, and the development and use of proxies; astrobiology and exobiology.
Các bài báo tiêu biểu
High-field NMR spectroscopy and FTICR mass spectrometry: powerful discovery tools for the molecular level characterization of marine dissolved organic matter Abstract. High-performance, non-target, high-resolution organic structural spectroscopy was applied to solid phase extracted marine dissolved organic matter (SPE-DOM) isolated from four different depths in the open South Atlantic Ocean off the Angola coast (3° E, 18° S; Angola Basin) and provided molecular level information with extraordinary coverage and resolution. Sampling was performed at depths of 5 m (Angola Current; near-surface photic zone), 48 m (Angola Current; fluorescence maximum), 200 m (still above Antarctic Intermediate Water, AAIW; upper mesopelagic zone) and 5446 m (North Atlantic Deep Water, NADW; abyssopelagic, ~30 m above seafloor) and produced SPE-DOM with near 40% carbon yield and beneficial nuclear magnetic resonance (NMR) relaxation properties, a crucial prerequisite for the acquisition of NMR spectra with excellent resolution. 1H and 13C NMR spectra of all four marine SPE-DOM showed smooth bulk envelopes, reflecting intrinsic averaging from massive signal overlap, with a few percent of visibly resolved signatures and variable abundances for all major chemical environments. The abundance of singly oxygenated aliphatics and acetate derivatives in 1H NMR spectra declined from surface to deep marine SPE-DOM, whereas C-based aliphatics and carboxyl-rich alicyclic molecules (CRAM) increased in abundance. Surface SPE-DOM contained fewer methyl esters than all other samples, likely a consequence of direct exposure to sunlight. Integration of 13C NMR spectra revealed continual increase of carboxylic acids and ketones from surface to depth, reflecting a progressive oxygenation, with concomitant decline of carbohydrate-related substructures. Aliphatic branching increased with depth, whereas the fraction of oxygenated aliphatics declined for methine, methylene and methyl carbon. Lipids in the oldest SPE-DOM at 5446 m showed a larger share of ethyl groups and methylene carbon than observed in the other samples. Two-dimensional NMR spectra showed exceptional resolution and depicted resolved molecular signatures in excess of a certain minimum abundance. Classical methyl groups terminating aliphatic chains represented ~15% of total methyl in all samples investigated. A noticeable fraction of methyl (~2%) was bound to olefinic carbon. Methyl ethers were abundant in surface marine SPE-DOM, and the chemical diversity of carbohydrates was larger than that of freshwater and soil DOM. In all samples, we identified sp2-hybridized carbon chemical environments with discrimination of isolated and conjugated olefins and α,β-unsaturated double bonds. Olefinic proton and carbon atoms were more abundant than aromatic ones; olefinic unsaturation in marine SPE-DOM will be more directly traceable to ultimate biogenic precursors than aromatic unsaturation. The abundance of furan, pyrrol and thiophene derivatives was marginal, whereas benzene derivatives, phenols and six-membered nitrogen heterocycles were prominent; a yet unassigned set of six-membered N-heterocycles with likely more than one single nitrogen occurred in all samples. Various key polycyclic aromatic hydrocarbon substructures suggested the presence of thermogenic organic matter at all water depths. Progressive NMR cross-peak attenuation from surface to deep marine SPE-DOM was particularly strong in COSY NMR spectra and indicated a continual disappearance of biosignatures as well as entropy gain from an ever increased molecular diversity. Nevertheless, a specific near-seafloor SPE-DOM signature of unsaturated molecules recognized in both NMR and Fourier transform ion cyclotron mass spectrometry (FTICR/MS) possibly originated from sediment leaching. The conformity of key NMR and FTICR/MS signatures suggested the presence of a large set of identical molecules throughout the entire ocean column even though the investigated water masses belonged to different oceanic regimes and currents. FTICR/MS showed abundant CHO, CHNO, CHOS and CHNOS molecular series with slightly increasing numbers of mass peaks and average mass from surface to bottom SPE-DOM. The proportion of CHO and CHNO negative ions increased from surface to depth, whereas CHOS and especially CHNOS molecular series markedly declined. While certain rather aliphatic CHOS and CHNOS ions were observed solely in the surface, deep marine SPE-DOM was enriched in unique unsaturated and rather oxygenated CHO and CHNO molecular series. With the exception of abyssopelagic SPE-DOM at 5446 m, which showed a peculiar CHOS chemistry of unsaturated carbon and reduced sulphur (black sulphur), CHO and CHNO molecular series contributed ~87% to total positive electrospray ionization FTICR mass peak integral, with a near constant ratio of CHNO / CHO molecular compositions near 1.13 ± 0.05. In case of all four marine SPE-DOM, remarkably disparate average elemental compositions as determined from either MS and NMR spectra were observed, caused by a pronounced ionization selectivity in electrospray ionization FTICR/MS. The study demonstrates that the exhaustive characterization of complex unknowns in marine DOM will enable a meaningful classification of individual marine biogeosignatures. Future in-depth functional biodiversity studies with a clear understanding of DOM structure and function might eventually lead to a novel, unified perception of biodiversity and biogeochemistry.
Tập 10 Số 3 - Trang 1583-1624
Asymmetric responses of primary productivity to altered precipitation simulated by ecosystem models across three long-term grassland sites Abstract. Field measurements of aboveground net primary productivity (ANPP) in
temperate grasslands suggest that both positive and negative asymmetric
responses to changes in precipitation (P) may occur. Under normal range of
precipitation variability, wet years typically result in ANPP gains being
larger than ANPP declines in dry years (positive asymmetry), whereas
increases in ANPP are lower in magnitude in extreme wet years compared to
reductions during extreme drought (negative asymmetry). Whether the current
generation of ecosystem models with a coupled carbon–water system in
grasslands are capable of simulating these asymmetric ANPP responses is an
unresolved question. In this study, we evaluated the simulated responses of
temperate grassland primary productivity to scenarios of altered
precipitation with 14 ecosystem models at three sites: Shortgrass
steppe (SGS), Konza Prairie (KNZ) and Stubai Valley meadow (STU), spanning a
rainfall gradient from dry to moist. We found that (1) the spatial slopes
derived from modeled primary productivity and precipitation across sites were
steeper than the temporal slopes obtained from inter-annual variations, which
was consistent with empirical data; (2) the asymmetry of the responses of
modeled primary productivity under normal inter-annual precipitation
variability differed among models, and the mean of the model ensemble
suggested a negative asymmetry across the three sites, which was contrary to
empirical evidence based on filed observations; (3) the mean sensitivity of
modeled productivity to rainfall suggested greater negative response with
reduced precipitation than positive response to an increased precipitation
under extreme conditions at the three sites; and (4) gross primary productivity
(GPP), net primary productivity (NPP), aboveground NPP (ANPP) and belowground
NPP (BNPP) all showed concave-down nonlinear responses to altered
precipitation in all the models, but with different curvatures and mean
values. Our results indicated that most models overestimate the negative
drought effects and/or underestimate the positive effects of increased
precipitation on primary productivity under normal climate conditions,
highlighting the need for improving eco-hydrological processes in those
models in the future.
Tập 15 Số 11 - Trang 3421-3437
Spatial variability in surface-water <i>p</i>CO<sub>2</sub> and gas exchange in the world's largest semi-enclosed estuarine system: St. Lawrence Estuary (Canada) Abstract. The incomplete spatial coverage of CO2 partial pressure (pCO2) measurements across estuary types represents a significant knowledge gap in current regional- and global-scale estimates of estuarine CO2 emissions. Given the limited research on CO2 dynamics in large estuaries and bay systems, as well as the sources of error in the calculation of pCO2 (carbonic acid dissociation constants, organic alkalinity), estimates of air–sea CO2 fluxes in estuaries are subject to large uncertainties. The Estuary and Gulf of St. Lawrence (EGSL) at the lower limit of the subarctic region in eastern Canada is the world's largest estuarine system, and is characterized by an exceptional richness in environmental diversity. It is among the world's most intensively studied estuaries, yet there are no published data on its surface-water pCO2 distribution. To fill this data gap, a comprehensive dataset was compiled from direct and indirect measurements of carbonate system parameters in the surface waters of the EGSL during the spring or summer of 2003–2016. The calculated surface-water pCO2 ranged from 435 to 765 µatm in the shallow partially mixed upper estuary, 139–578 µatm in the deep stratified lower estuary, and 207–478 µatm along the Laurentian Channel in the Gulf of St. Lawrence. Overall, at the time of sampling, the St. Lawrence Estuary served as a very weak source of CO2 to the atmosphere, with an area-averaged CO2 degassing flux of 0.98 to 2.02 mmol C m−2 d−1 (0.36 to 0.74 mol C m−2 yr−1). A preliminary analysis revealed that respiration (upper estuary), photosynthesis (lower estuary), and temperature (Gulf of St. Lawrence) controlled the spatial variability in surface-water pCO2. Whereas we used the dissociation constants of Cai and Wang (1998) to calculate estuarine pCO2, formulations recommended for best practices in open ocean environments may underestimate pCO2 at low salinities, while those of Millero (2010) may result in overestimates.
Tập 14 Số 13 - Trang 3221-3237
Seasonal response of air–water CO<sub>2</sub> exchange along the land–ocean aquatic continuum of the northeast North American coast. Abstract. This regional study quantifies the CO2 exchange at the air–water interface along the land–ocean aquatic continuum (LOAC) of the northeast North American coast, from streams to the shelf break. Our analysis explicitly accounts for spatial and seasonal variability in the CO2 fluxes. The yearly integrated budget reveals the gradual change in the intensity of the CO2 exchange at the air–water interface, from a strong source towards the atmosphere in streams and rivers (3.0 ± 0.5 TgC yr−1) and estuaries (0.8 ± 0.5 TgC yr−1) to a net sink in continental shelf waters (−1.7 ± 0.3 TgC yr−1). Significant differences in flux intensity and their seasonal response to climate variations is observed between the North and South sections of the study area, both in rivers and coastal waters. Ice cover, snowmelt, and intensity of the carbon removal efficiency through the estuarine filter are identified as important control factors of the observed spatiotemporal variability in CO2 exchange along the LOAC.
Tập 12 Số 5 - Trang 1447-1458
A strong CO<sub>2</sub> sink enhanced by eutrophication in a tropical coastal embayment (Guanabara Bay, Rio de Janeiro, Brazil) Abstract. In contrast to its small surface area, the coastal zone plays a disproportionate role in the global carbon cycle. Carbon production, transformation, emission and burial rates at the land–ocean interface are significant at the global scale but still poorly known, especially in tropical regions. Surface water pCO2 and ancillary parameters were monitored during nine field campaigns between April 2013 and April 2014 in Guanabara Bay, a tropical eutrophic to hypertrophic semi-enclosed estuarine embayment surrounded by the city of Rio de Janeiro, southeast Brazil. Water pCO2 varied between 22 and 3715 ppmv in the bay, showing spatial, diurnal and seasonal trends that mirrored those of dissolved oxygen (DO) and chlorophyll a (Chl a). Marked pCO2 undersaturation was prevalent in the shallow, confined and thermally stratified waters of the upper bay, whereas pCO2 oversaturation was restricted to sites close to the small river mouths and small sewage channels, which covered only 10 % of the bay's area. Substantial daily variations in pCO2 (up to 395 ppmv between dawn and dusk) were also registered and could be integrated temporally and spatially for the establishment of net diurnal, seasonal and annual CO2 fluxes. In contrast to other estuaries worldwide, Guanabara Bay behaved as a net sink of atmospheric CO2, a property enhanced by the concomitant effects of strong radiation intensity, thermal stratification, and high availability of nutrients, which promotes phytoplankton development and net autotrophy. The calculated CO2 fluxes for Guanabara Bay ranged between −9.6 and −18.3 mol C m−2 yr−1, of the same order of magnitude as the organic carbon burial and organic carbon inputs from the watershed. The positive and high net community production (52.1 mol C m−2 yr−1) confirms the high carbon production in the bay. This autotrophic metabolism is apparently enhanced by eutrophication. Our results show that global CO2 budgetary assertions still lack information on tropical, marine-dominated estuarine systems, which are affected by thermal stratification and eutrophication and behave specifically with respect to atmospheric CO2.
Tập 12 Số 20 - Trang 6125-6146
Air–sea exchanges of CO<sub>2</sub> in the world's coastal seas Abstract. The air–sea exchanges of CO2 in the world's 165 estuaries and 87 continental shelves are evaluated. Generally and in all seasons, upper estuaries with salinities of less than two are strong sources of CO2 (39 ± 56 mol C m−2 yr−1, positive flux indicates that the water is losing CO2 to the atmosphere); mid-estuaries with salinities of between 2 and 25 are moderate sources (17.5 ± 34 mol C m−2 yr−1) and lower estuaries with salinities of more than 25 are weak sources (8.4 ± 14 mol C m−2 yr−1). With respect to latitude, estuaries between 23.5 and 50° N have the largest flux per unit area (63 ± 101 mmol C m−2 d−1); these are followed by lower-latitude estuaries (23.5–0° S: 44 ± 29 mmol C m−2 d−1; 0–23.5° N: 39 ± 55 mmol C m−2 d−1), and then regions north of 50° N (36 ± 91 mmol C m−2 d−1). Estuaries south of 50° S have the smallest flux per unit area (9.5 ± 12 mmol C m−2 d−1). Mixing with low-pCO2 shelf waters, water temperature, residence time and the complexity of the biogeochemistry are major factors that govern the pCO2 in estuaries, but wind speed, seldom discussed, is critical to controlling the air–water exchanges of CO2. The total annual release of CO2 from the world's estuaries is now estimated to be 0.10 Pg C yr−1, which is much lower than published values mainly because of the contribution of a considerable amount of heretofore unpublished or new data from Asia and the Arctic. The Asian data, although indicating high pCO2, are low in sea-to-air fluxes because of low wind speeds. Previously determined flux values rely heavily on data from Europe and North America, where pCO2 is lower but wind speeds are much higher, such that the CO2 fluxes are higher than in Asia. Newly emerged CO2 flux data in the Arctic reveal that estuaries there mostly absorb rather than release CO2. Most continental shelves, and especially those at high latitude, are undersaturated in terms of CO2 and absorb CO2 from the atmosphere in all seasons. Shelves between 0 and 23.5° S are on average a weak source and have a small flux per unit area of CO2 to the atmosphere. Water temperature, the spreading of river plumes, upwelling, and biological production seem to be the main factors in determining pCO2 in the shelves. Wind speed, again, is critical because at high latitudes, the winds tend to be strong. Since the surface water pCO2 values are low, the air-to-sea fluxes are high in regions above 50° N and below 50° S. At low latitudes, the winds tend to be weak, so the sea-to-air CO2 flux is small. Overall, the world's continental shelves absorb 0.4 Pg C yr−1 from the atmosphere.
Tập 10 Số 10 - Trang 6509-6544
Air–water fluxes and sources of carbon dioxide in the Delaware Estuary: spatial and seasonal variability Abstract. Distributions of surface water partial pressure of carbon dioxide (pCO2) were measured on nine cruises in the Delaware Estuary (USA). The Delaware River was highly supersaturated in pCO2 with respect to the atmosphere during all seasons, while the Delaware Bay was undersaturated in pCO2 during spring and late summer and moderately supersaturated during mid-summer, fall, and winter. While the smaller upper tidal river was a strong CO2 source (27.1 ± 6.4 mol-C m−2 yr−1), the much larger bay was a weak source (1.2 ± 1.4 mol-C m−2 yr−1), the latter of which had a much greater area than the former. In turn, the Delaware Estuary acted as a relatively weak CO2 source (2.4 ± 4.8 mol-C m−2 yr−1), which is in great contrast to many other estuarine systems. Seasonally, pCO2 changes were greatest at low salinities (0 ≤ S < 5), with pCO2 values in the summer nearly 3-fold greater than those observed in the spring and fall. Undersaturated pCO2 was observed over the widest salinity range (7.5 ≤ S < 30) during spring. Near to supersaturated pCO2 was generally observed in mid- to high-salinity waters (20 ≤ S < 30) except during spring and late summer. Strong seasonal trends in internal estuarine production and consumption of CO2 were observed throughout both the upper tidal river and lower bay. Positive correlations between river-borne and air–water CO2 fluxes in the upper estuary emphasize the significance of river-borne CO2 degassing to overall CO2 fluxes. While river-borne CO2 degassing heavily influenced CO2 dynamics in the upper tidal river, these forces were largely compensated for by internal biological processes within the extensive bay system of the lower estuary.
Tập 12 Số 20 - Trang 6085-6101
Distribution and bacterial availability of dissolved neutral sugars in the South East Pacific Abstract. The distribution and bacterial availability of dissolved neutral sugars were studied in the South East Pacific from October to December 2004 during the BIOSOPE cruise. Four contrasting stations were investigated: Marquesas Islands (MAR), the hyper-oligotrophic South Pacific Gyre (GYR), the eastern part of the Gyre (EGY), and the coastal waters associated to the upwelling area off Chile (UPW). Total (free and combined) dissolved neutral sugar (TDNS) concentrations were in the same order of magnitude at MAR (387±293 nM), GYR (206±107 nM), EGY (269±175 nM), and UPW (231±73 nM), with the highest and lowest concentrations found at MAR (30 m, 890 nM) and EGY (250 m, 58 nM), respectively. Their contribution to dissolved organic carbon (TDNS-C×DOC−1%) was generally low for all sites varying from 0.4% to 6.7% indicating that South East Pacific surface waters were relatively poor in neutral sugars. Free dissolved neutral sugar (FDNS; e.g. sugars analyzed without hydrolysis) concentrations were very low within the detection limit of our method (5–10 nM) accounting for <5% of the TDNS. In general, the predominant sugars within the TDNS pool were glucose, xylose, arabinose, and galactose, while in the FDNS pool only glucose was present. TDNS stock to bacterial production ratios (integrated values from the surface to the deep chlorophyll maximum) were high at GYR with respect to the low primary production, whereas the opposite trend was observed in the highly productive area of UPW. Intermediate situations were observed for MAR and EGY. Bioavailability of dissolved organic matter (DOM) exposed to natural solar radiation was also experimentally studied and compared to dark treatments. Our results showed no or little detectable effect of sunlight on DOM bacterial assimilation in surface waters of UPW and GYR, while a significant stimulation was found in MAR and EGY. The overall results clearly suggest that DOM is less labile at GYR compared to UPW, which is consistent with the observed accumulation of dissolved organic carbon and the elevated C/N ratios reported by Raimbault et al. (2008).
Tập 5 Số 4 - Trang 1165-1173
The composition and flux of particulate and dissolved carbohydrates from the Rhone River into the Mediterranean Sea Abstract. Carbohydrates are important components of the carbon cycle and may be used as indicators of the origin and the diagenetic status of marine and terrestrial organic matter. Nevertheless, comprehensive studies of both particulate (PCHO) and dissolved (DCHO) carbohydrates in rivers are scarce, and the seasonal and interannual variability of these compounds in relationship to the bulk particulate (POM) and dissolved organic matter (DOM) is largely unknown. For the period 2007–2009, we sampled once per month POM and DOM and measured the total suspended matter (TSM), POM, DOM, PCHO, and DCHO for the Rhône River, which flows into the Mediterranean Sea. Using these measurements, we estimated for the above parameters annual fluxes for the period 2007–2009. The estimated carbohydrate fluxes averaged 0.064 ± 0.026 × 1010 moles C yr−1 for PCHO and 0.042 ± 0.008 × 1010 moles C yr−1 DCHO, representing 6 % and 7 % of the annual flux of POC and DOC, respectively. During flood and low-water periods, POM variations were reflected into the PCHO pool, whereas this was not observed for DOC and DCHO, indicating a decoupling between particulate and dissolved organic matter. Our results also showed that flood and low-water periods may be differentiated using the ratios PCHO/DCHO and POC/DOC, which had a significant relationship. Based on the carbohydrate abundances in both the PCHO and DCHO pools, we conclude that this material mainly derives from allochthonous sources (vascular plants, bacteria and soils). Moreover, during flood events, an enrichment in mannose in POM was observed, probably reflecting an angiosperm source (leaves or grasses). By expanding our results to the northwestern Mediterranean Sea (Gulf of Lions), we found that the total organic carbon (TOC) fluxes of the Rhône River accounted for ~1 % of the standing stock of seawater TOC. Considering that glucose is the most abundant carbohydrate in both particulate and dissolved organic matter pools (~33 %), its annual flux in the northwestern Mediterranean Sea was estimated to 3.8 × 108 moles glucose.
Tập 9 Số 5 - Trang 1827-1844
Fluorescence and absorption properties of chromophoric dissolved organic matter (CDOM) in coastal surface waters of the northwestern Mediterranean Sea, influence of the Rhône River Abstract. Seawater samples were collected monthly in surface waters (2 and 5 m depths) of the Bay of Marseilles (northwestern Mediterranean Sea; 5°17'30" E, 43°14'30" N) during one year from November 2007 to December 2008 and studied for total organic carbon (TOC) as well as chromophoric dissolved organic matter (CDOM) optical properties (absorbance and fluorescence). The annual mean value of surface CDOM absorption coefficient at 350 nm [aCDOM(350)] was very low (0.10 ± 0.02 m−1) in comparison to values usually found in coastal waters, and no significant seasonal trend in aCDOM(350) could be determined. By contrast, the spectral slope of CDOM absorption (SCDOM) was significantly higher (0.023 ± 0.003 nm−1) in summer than in fall and winter periods (0.017 ± 0.002 nm−1), reflecting either CDOM photobleaching or production in surface waters during stratified sunny periods. The CDOM fluorescence, assessed through excitation emission matrices (EEMs), was dominated by protein-like component (peak T; 1.30–21.94 QSU) and marine humic-like component (peak M; 0.55–5.82 QSU), while terrestrial humic-like fluorescence (peak C; 0.34–2.99 QSU) remained very low. This reflected a dominance of relatively fresh material from biological origin within the CDOM fluorescent pool. At the end of summer, surface CDOM fluorescence was very low and strongly blue shifted, reinforcing the hypothesis of CDOM photobleaching. Our results suggested that unusual Rhône River plume eastward intrusion events might reach Marseilles Bay within 2–3 days and induce local phytoplankton blooms and subsequent fluorescent CDOM production (peaks M and T) without adding terrestrial fluorescence signatures (peaks C and A). Besides Rhône River plumes, mixing events of the entire water column injected relative aged (peaks C and M) CDOM from the bottom into the surface and thus appeared also as an important source of CDOM in surface waters of the Marseilles Bay. Therefore, the assessment of CDOM optical properties, within the hydrological context, pointed out several biotic (in situ biological production, biological production within Rhône River plumes) and abiotic (photobleaching, mixing) factors controlling CDOM transport, production and removal in this highly urbanized coastal area.
Tập 7 Số 12 - Trang 4083-4103