Copper-binding proteins genes set predicting the overall survival and immune infiltration in hepatocellular carcinoma by bioinformatic analysis

Biochemistry and Biophysics Reports - Tập 34 - Trang 101466 - 2023
Manyu Liao1, Cong Li1,2,3, Caixia Hu4, Jing Ding1,2
1Department of General Surgery, Beijing YouAn Hospital, Capital Medical University, Beijing, 100069, China
2Clinical Center for Liver Cancer, Capital Medical University, Beijing, 100069, China
3Department of Surgery, First Medical Center of Chinese PLA General Hospital, Beijing, 100069, China
4Center of Oncology and Minimally Invasive Intervention, Beijing Youan Hospital, Capital Medical University, Beijing, 100069, China

Tài liệu tham khảo

Bray, 2018, Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries, CA A Cancer J. Clin., 68, 394, 10.3322/caac.21492

Olsen, 2010, Hepatocellular carcinoma: review of current treatment with a focus on targeted molecular therapies, Ther Adv Gastroenterol, 3, 55, 10.1177/1756283X09346669

Fujiwara, 2018, Risk factors and prevention of hepatocellular carcinoma in the era of precision medicine, J. Hepatol., 68, 526, 10.1016/j.jhep.2017.09.016

Deng, 2022, The dysregulation of inflammatory pathways triggered by copper exposure, Biol. Trace Elem. Res., 539

Grubman, 2014, Copper as a key regulator of cell signalling pathways, Expet Rev. Mol. Med., 16, e11, 10.1017/erm.2014.11

Barwinska-Sendra, 2017, The role of intermetal competition and mis-metalation in metal toxicity, Adv. Microb. Physiol., 70, 315, 10.1016/bs.ampbs.2017.01.003

Vallières, 2017, Mitochondrial ferredoxin determines vulnerability of cells to copper excess, Cell Chem Biol, 24, 1228, 10.1016/j.chembiol.2017.08.005

Tsvetkov, 2022, Copper induces cell death by targeting lipoylated TCA cycle proteins, Science, 375, 1254, 10.1126/science.abf0529

Ohrvik, 2014, How copper traverses cellular membranes through the mammalian copper transporter 1, Ctr1, Ann. N. Y. Acad. Sci., 1314, 32, 10.1111/nyas.12371

Puig, 2002, Molecular mechanisms of copper uptake and distribution, Curr. Opin. Chem. Biol., 6, 171, 10.1016/S1367-5931(02)00298-3

Koch, 1997, Copper-binding motifs in catalysis, transport, detoxification and signaling, Chem. Biol., 4, 549, 10.1016/S1074-5521(97)90241-6

Denoyer, 2015, Targeting copper in cancer therapy: 'Copper that Cancer, Metallomics, 7, 1459, 10.1039/C5MT00149H

Ash, 2021, The P-type ATPase transporter ATP7A promotes angiogenesis by limiting autophagic degradation of VEGFR2, Nat. Commun., 12, 3091, 10.1038/s41467-021-23408-1

Brewer, 2009, The use of copper-lowering therapy with tetrathiomolybdate in medicine, Expet Opin. Invest. Drugs, 18, 89, 10.1517/13543780802621859

Pan, 2003, Tetrathiomolybdate inhibits angiogenesis and metastasis through suppression of the NFkappaB signaling cascade, Mol. Cancer Res., 1, 701

Gunjan, 2017, Hepatocellular carcinoma: an unusual complication of longstanding wilson disease, J Clin Exp Hepatol, 7, 152, 10.1016/j.jceh.2016.09.012

Poo, 2003, Diagnostic value of the copper/zinc ratio in hepatocellular carcinoma: a case control study, J. Gastroenterol., 38, 45, 10.1007/s005350300005

Haratake, 1987, Tissue copper content in primary and metastatic liver cancers, Acta Pathol. Jpn., 37, 231

Davis, 2020, Altered copper homeostasis underlies sensitivity of hepatocellular carcinoma to copper chelation, Metallomics, 12, 1995, 10.1039/d0mt00156b

Himoto, 2016, Roles of copper in hepatocarcinogenesis via the activation of hypoxia-inducible factor-1α, Biol. Trace Elem. Res., 174, 58, 10.1007/s12011-016-0702-7

Blockhuys, 2017, Defining the human copper proteome and analysis of its expression variation in cancers, Metallomics, 9, 112, 10.1039/C6MT00202A

Öhrvik, 2013, Ctr2 regulates biogenesis of a cleaved form of mammalian Ctr1 metal transporter lacking the copper- and cisplatin-binding ecto-domain, Proc. Natl. Acad. Sci. U. S. A., 110, E4279, 10.1073/pnas.1311749110

Krishnamoorthy, 2016, Copper regulates cyclic-AMP-dependent lipolysis, Nat. Chem. Biol., 12, 586, 10.1038/nchembio.2098

Tsang, 2020, Copper is an essential regulator of the autophagic kinases ULK1/2 to drive lung adenocarcinoma, Nat. Cell Biol., 22, 412, 10.1038/s41556-020-0481-4

Ishida, 2013, Bioavailable copper modulates oxidative phosphorylation and growth of tumors, Proc. Natl. Acad. Sci. U. S. A., 110, 19507, 10.1073/pnas.1318431110

Xiao, 2012, Lysyl oxidase, extracellular matrix remodeling and cancer metastasis, Cancer Microenviron, 5, 261, 10.1007/s12307-012-0105-z

Siddikuzzaman, 2011, Lysyl oxidase: a potential target for cancer therapy, Inflammopharmacology, 19, 117, 10.1007/s10787-010-0073-1

Turski, 2012, A novel role for copper in Ras/mitogen-activated protein kinase signaling, Mol. Cell Biol., 32, 1284, 10.1128/MCB.05722-11

MacDonald, 2014, Memo is a copper-dependent redox protein with an essential role in migration and metastasis, Sci. Signal., 7, ra56, 10.1126/scisignal.2004870

Nagaraju, 2014, Molecular mechanisms underlying the divergent roles of SPARC in human carcinogenesis, Carcinogenesis, 35, 967, 10.1093/carcin/bgu072

van de Sluis, 2010, COMMD1 disrupts HIF-1alpha/beta dimerization and inhibits human tumor cell invasion, J. Clin. Invest., 120, 2119, 10.1172/JCI40583

Camp, 2004, X-tile: a new bio-informatics tool for biomarker assessment and outcome-based cut-point optimization, Clin. Cancer Res., 10, 7252, 10.1158/1078-0432.CCR-04-0713

Newman, 2019, Determining cell type abundance and expression from bulk tissues with digital cytometry, Nat. Biotechnol., 37, 773, 10.1038/s41587-019-0114-2

Kraehenbuehl, 2022, Enhancing immunotherapy in cancer by targeting emerging immunomodulatory pathways, Nat. Rev. Clin. Oncol., 19, 37, 10.1038/s41571-021-00552-7

Wu, 2022, Spatiotemporal immune landscape of colorectal cancer liver metastasis at single-cell level, Cancer Discov., 12, 134, 10.1158/2159-8290.CD-21-0316

Chen, 2018, Profiling tumor infiltrating immune cells with CIBERSORT, Methods Mol. Biol., 1711, 243, 10.1007/978-1-4939-7493-1_12

Tapiero, 2003, Trace elements in human physiology and pathology, Copper Biomed Pharmacother, 57, 386, 10.1016/S0753-3322(03)00012-X

Kim, 2008, Mechanisms for copper acquisition, distribution and regulation, Nat. Chem. Biol., 4, 176, 10.1038/nchembio.72

Jiang, 2022, Copper-induced tumor cell death mechanisms and antitumor theragnostic applications of copper complexes, Nanomedicine, 17, 303, 10.2217/nnm-2021-0374

Avan, 2022, The role of zinc in the treatment of wilson's disease, Int. J. Mol. Sci., 23, 10.3390/ijms23169316

Zhou, 2022, Copper induces microglia-mediated neuroinflammation through ROS/NF-κB pathway and mitophagy disorder, Food Chem. Toxicol.

Yang, 2022, COMMD10 inhibits HIF1α/CP loop to enhance ferroptosis and radiosensitivity by disrupting Cu-Fe balance in hepatocellular carcinoma, J. Hepatol., 76, 1138, 10.1016/j.jhep.2022.01.009

Chen, 2022, A novel cuproptosis-related prognostic lncRNA signature for predicting immune and drug therapy response in hepatocellular carcinoma, Front. Immunol., 13

Bian, 2022, A novel cuproptosis-related prognostic gene signature and validation of differential expression in clear cell renal cell carcinoma, Genes, 13, 10.3390/genes13050851

Tang, 2022, Clinical significance and immune infiltration analyses of the cuproptosis-related human copper proteome in gastric cancer, Biomolecules, 12, 10.3390/biom12101459

Chen, 2020, High glypican-1 expression is a prognostic factor for predicting a poor clinical prognosis in patients with hepatocellular carcinoma, Oncol. Lett., 20, 197, 10.3892/ol.2020.12058

Cox, 2011, Remodeling and homeostasis of the extracellular matrix: implications for fibrotic diseases and cancer, Dis Model Mech, 4, 165, 10.1242/dmm.004077

Sun, 2022, Diagnostic value, prognostic value, and immune infiltration of LOX family members in liver cancer: bioinformatic analysis, Front. Oncol., 12

Chen, 2014, S100 protein family in human cancer, Am J Cancer Res, 4, 89

Cai, 2018, High expression of S100A12 on intratumoral stroma cells indicates poor prognosis following surgical resection of hepatocellular carcinoma, Oncol. Lett., 16, 5398

McCann, 2022, Heterogeneous nuclear ribonucleoprotein hnRNPA2/B1 regulates the abundance of the copper-transporter ATP7A in an isoform-dependent manner, Front. Mol. Biosci., 9, 10.3389/fmolb.2022.1067490

Vest, 2018, Dynamic changes in copper homeostasis and post-transcriptional regulation of Atp7a during myogenic differentiation, Metallomics Integrated Biometal Sci, 10, 309, 10.1039/C7MT00324B

Yu, 2017, Dynamics of the metal binding domains and regulation of the human copper transporters ATP7B and ATP7A, IUBMB Life, 69, 226, 10.1002/iub.1611

McCann, 2022, Heterogeneous nuclear ribonucleoprotein hnRNPA2/B1 regulates the abundance of the copper-transporter ATP7A in an isoform-dependent manner, Front. Mol. Biosci., 9, 10.3389/fmolb.2022.1067490

Vest, 2018, Dynamic changes in copper homeostasis and post-transcriptional regulation of Atp7a during myogenic differentiation, Metallomics, 10, 309, 10.1039/C7MT00324B

Yu, 2017, Dynamics of the metal binding domains and regulation of the human copper transporters ATP7B and ATP7A, IUBMB Life, 69, 226, 10.1002/iub.1611

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Biochemistry and Biophysics Reports

Tập 34

101466

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