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Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Springer Science and Business Media LLC - - 2008
Nicolas J. Parker, Andrew G. Parker
MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads
Springer Science and Business Media LLC - Tập 7 - Trang 1-5 - 2012
Alexander V Tyakht, Anna S Popenko, Maxim S Belenikin, Ilya A Altukhov, Alexander V Pavlenko, Elena S Kostryukova, Oksana V Selezneva, Andrei K Larin, Irina Y Karpova, Dmitry G Alexeev
MALINA is a web service for bioinformatic analysis of whole-genome metagenomic data obtained from human gut microbiota sequencing. As input data, it accepts metagenomic reads of various sequencing technologies, including long reads (such as Sanger and 454 sequencing) and next-generation (including SOLiD and Illumina). It is the first metagenomic web service that is capable of processing SOLiD colo...... hiện toàn bộ
Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules
Springer Science and Business Media LLC - Tập 3 - Trang 1-5 - 2008
Pirkko Muhonen, Ranga N Parthasarathy, Anthony J Janckila, Kalman G Büki, H Kalervo Väänänen
Here we report the improved results of a new siRNA design program and analysis tool called siRNA_profile that reveals an additional criterion for bioinformatic search of highly functional siRNA sequences. We retrospectively analysed over 2400 siRNA sequences from 34 genes and with known efficacies to categorize factors that differentiate highly, moderately and non-functional siRNA sequences in mor...... hiện toàn bộ
Flow: Statistics, visualization and informatics for flow cytometry
Springer Science and Business Media LLC - Tập 3 - Trang 1-12 - 2008
Jacob Frelinger, Thomas B Kepler, Cliburn Chan
Flow is an open source software application for clinical and experimental researchers to perform exploratory data analysis, clustering and annotation of flow cytometric data. Flow is an extensible system that offers the ease of use commonly found in commercial flow cytometry software packages and the statistical power of academic packages like the R BioConductor project.
BioPatRec: A modular research platform for the control of artificial limbs based on pattern recognition algorithms
Springer Science and Business Media LLC - Tập 8 - Trang 1-18 - 2013
Max Ortiz-Catalan, Rickard Brånemark, Bo Håkansson
Processing and pattern recognition of myoelectric signals have been at the core of prosthetic control research in the last decade. Although most studies agree on reporting the accuracy of predicting predefined movements, there is a significant amount of study-dependent variables that make high-resolution inter-study comparison practically impossible. As an effort to provide a common research platf...... hiện toàn bộ
Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format
Springer Science and Business Media LLC - Tập 6 - Trang 1-5 - 2011
Ryan L Webb, Avi Ma'ayan
The World Wide Web plays a critical role in enabling molecular, cell, systems and computational biologists to exchange, search, visualize, integrate, and analyze experimental data. Such efforts can be further enhanced through the development of semantic web concepts. The semantic web idea is to enable machines to understand data through the development of protocol free data exchange formats such a...... hiện toàn bộ
Molecular-docking study of malaria drug target enzyme transketolase in Plasmodium falciparum 3D7 portends the novel approach to its treatment
Springer Science and Business Media LLC - Tập 10 - Trang 1-14 - 2015
Md. Anayet Hasan, Md. Habibul Hasan Mazumder, Afrin Sultana Chowdhury, Amit Datta, Md. Arif Khan
Malaria has been a major life threatening mosquito borne disease from long since. Unavailability of any effective vaccine and recent emergence of multi drug resistant strains of malaria pathogen Plasmodium falciparum continues to cause persistent deaths in the tropical and sub-tropical region. As a result, demands for new targets for more effective anti-malarial drugs are escalating. Transketolase...... hiện toàn bộ
H3Africa: a tipping point for a revolution in bioinformatics, genomics and health research in Africa
Springer Science and Business Media LLC - Tập 9 - Trang 1-3 - 2014
Moses P Adoga, Segun A Fatumo, Simon M Agwale
A multi-million dollar research initiative involving the National Institutes of Health (NIH), Wellcome Trust and African scientists has been launched. The initiative, referred to as H3Africa, is an acronym that stands for Human Heredity and Health in Africa. Here, we outline what this initiative is set to achieve and the latest commitments of the key players as at October 2013. The initiative has ...... hiện toàn bộ
VersaCount: customizable manual tally software for cell counting
Springer Science and Business Media LLC - - 2010
Charles C. Kim, Joseph L. DeRisi
LocusTrack: Integrated visualization of GWAS results and genomic annotation
Springer Science and Business Media LLC - Tập 10 - Trang 1-4 - 2015
Gabriel Cuellar-Partida, Miguel E Renteria, Stuart MacGregor
Genome-wide association studies (GWAS) are an important tool for the mapping of complex traits and diseases. Visual inspection of genomic annotations may be used to generate insights into the biological mechanisms underlying GWAS-identified loci. We developed LocusTrack, a web-based application that annotates and creates plots of regional GWAS results and incorporates user-specified tracks that di...... hiện toàn bộ
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