Genome-wide analysis of LTR-retrotransposons in oil palmSpringer Science and Business Media LLC - Tập 16 - Trang 1-14 - 2015
Thierry Beulé, Mawussé DT Agbessi, Stephane Dussert, Estelle Jaligot, Romain Guyot
The oil palm (Elaeis guineensis Jacq.) is a major cultivated crop and the world’s largest source of edible vegetable oil. The genus Elaeis comprises two species E. guineensis, the commercial African oil palm and E. oleifera, which is used in oil palm genetic breeding. The recent publication of both the African oil palm genome assembly and the first draft sequence of its Latin American relative now...... hiện toàn bộ
MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropoutSpringer Science and Business Media LLC - Tập 14 - Trang 1-17 - 2013
Simone Sommer, Alexandre Courtiol, Camila J Mazzoni
The Major Histocompatibility Complex (MHC) is the most important genetic marker to study patterns of adaptive genetic variation determining pathogen resistance and associated life history decisions. It is used in many different research fields ranging from human medical, molecular evolutionary to functional biodiversity studies. Correct assessment of the individual allelic diversity pattern and th...... hiện toàn bộ
A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcriptsSpringer Science and Business Media LLC - Tập 18 - Trang 1-14 - 2017
Hugo W. Schneider, Taina Raiol, Marcelo M. Brigido, Maria Emilia M. T. Walter, Peter F. Stadler
In recent years, a rapidly increasing number of RNA transcripts has been generated by thousands of sequencing projects around the world, creating enormous volumes of transcript data to be analyzed. An important problem to be addressed when analyzing this data is distinguishing between long non-coding RNAs (lncRNAs) and protein coding transcripts (PCTs). Thus, we present a Support Vector Machine (S...... hiện toàn bộ
Comparative genomic analysis of eutherian fibroblast growth factor genesSpringer Science and Business Media LLC - Tập 21 - Trang 1-10 - 2020
Marko Premzl
The eutherian fibroblast growth factors were implicated as key regulators in developmental processes. However, there were major disagreements in descriptions of comprehensive eutherian fibroblast growth factors gene data sets including either 18 or 22 homologues. The present analysis attempted to revise and update comprehensive eutherian fibroblast growth factor gene data sets, and address and res...... hiện toàn bộ
Metagenomic sequencing revealed the potential of banknotes as a repository of microbial genesSpringer Science and Business Media LLC - Tập 22 - Trang 1-10 - 2021
Jun Lin, Wenqian Jiang, Lin Chen, Huilian Zhang, Yang Shi, Xin Liu, Weiwen Cai
Genetic resources are important natural assets. Discovery of new enzyme gene sequences has been an ongoing effort in biotechnology industry. In the genomic age, genomes of microorganisms from various environments have been deciphered. Increasingly, it has become more and more difficult to find novel enzyme genes. In this work, we attempted to use the easily accessible banknotes to search for novel...... hiện toàn bộ
Comparative genomics applied to Mucor species with different lifestylesSpringer Science and Business Media LLC - Tập 21 - Trang 1-21 - 2020
Annie Lebreton, Erwan Corre, Jean-Luc Jany, Loraine Brillet-Guéguen, Carlos Pèrez-Arques, Victoriano Garre, Misharl Monsoor, Robert Debuchy, Christophe Le Meur, Emmanuel Coton, Georges Barbier, Laurence Meslet-Cladière
Despite a growing number of investigations on early diverging fungi, the corresponding lineages have not been as extensively characterized as Ascomycota or Basidiomycota ones. The Mucor genus, pertaining to one of these lineages is not an exception. To this date, a restricted number of Mucor annotated genomes is publicly available and mainly correspond to the reference species, Mucor circinelloide...... hiện toàn bộ
Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisationSpringer Science and Business Media LLC - Tập 8 - Trang 1-17 - 2007
Christine Stansberg, Audun Osland Vik-Mo, Rita Holdhus, Harald Breilid, Boleslaw Srebro, Kjell Petersen, Hugo A Jørgensen, Inge Jonassen, Vidar M Steen
The mammalian brain is divided into distinct regions with structural and neurophysiological differences. As a result, gene expression is likely to vary between regions in relation to their cellular composition and neuronal function. In order to improve our knowledge and understanding of regional patterns of gene expression in the CNS, we have generated a global map of gene expression in selected r...... hiện toàn bộ