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Genome-wide analysis of LTR-retrotransposons in oil palm
Springer Science and Business Media LLC - Tập 16 - Trang 1-14 - 2015
Thierry Beulé, Mawussé DT Agbessi, Stephane Dussert, Estelle Jaligot, Romain Guyot
The oil palm (Elaeis guineensis Jacq.) is a major cultivated crop and the world’s largest source of edible vegetable oil. The genus Elaeis comprises two species E. guineensis, the commercial African oil palm and E. oleifera, which is used in oil palm genetic breeding. The recent publication of both the African oil palm genome assembly and the first draft sequence of its Latin American relative now...... hiện toàn bộ
MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout
Springer Science and Business Media LLC - Tập 14 - Trang 1-17 - 2013
Simone Sommer, Alexandre Courtiol, Camila J Mazzoni
The Major Histocompatibility Complex (MHC) is the most important genetic marker to study patterns of adaptive genetic variation determining pathogen resistance and associated life history decisions. It is used in many different research fields ranging from human medical, molecular evolutionary to functional biodiversity studies. Correct assessment of the individual allelic diversity pattern and th...... hiện toàn bộ
A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcripts
Springer Science and Business Media LLC - Tập 18 - Trang 1-14 - 2017
Hugo W. Schneider, Taina Raiol, Marcelo M. Brigido, Maria Emilia M. T. Walter, Peter F. Stadler
In recent years, a rapidly increasing number of RNA transcripts has been generated by thousands of sequencing projects around the world, creating enormous volumes of transcript data to be analyzed. An important problem to be addressed when analyzing this data is distinguishing between long non-coding RNAs (lncRNAs) and protein coding transcripts (PCTs). Thus, we present a Support Vector Machine (S...... hiện toàn bộ
Characterization of constitutive CTCF/cohesin loci: a possible role in establishing topological domains in mammalian genomes
Springer Science and Business Media LLC - - 2013
Yuanyuan Li, Weichun Huang, Liang Niu, David M. Umbach, Shay Covo, Leping Li
Comparative Genomics of Helicobacter pylori and the human-derived Helicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans
Springer Science and Business Media LLC - Tập 12 - Trang 1-21 - 2011
Thomas Schott, Pradeep K Kondadi, Marja-Liisa Hänninen, Mirko Rossi
The canine Gram-negative Helicobacter bizzozeronii is one of seven species in Helicobacter heilmannii sensu lato that are detected in 0.17-2.3% of the gastric biopsies of human patients with gastric symptoms. At the present, H. bizzozeronii is the only non-pylori gastric Helicobacter sp. cultivated from human patients and is therefore a good alternative model of human gastric Helicobacter disease....... hiện toàn bộ
Comparative genomic analysis of eutherian fibroblast growth factor genes
Springer Science and Business Media LLC - Tập 21 - Trang 1-10 - 2020
Marko Premzl
The eutherian fibroblast growth factors were implicated as key regulators in developmental processes. However, there were major disagreements in descriptions of comprehensive eutherian fibroblast growth factors gene data sets including either 18 or 22 homologues. The present analysis attempted to revise and update comprehensive eutherian fibroblast growth factor gene data sets, and address and res...... hiện toàn bộ
Mouse gastric tumor models with prostaglandin E2 pathway activation show similar gene expression profiles to intestinal-type human gastric cancer
Springer Science and Business Media LLC - Tập 10 - Trang 1-8 - 2009
Hiraku Itadani, Hiroko Oshima, Masanobu Oshima, Hidehito Kotani
Gastric cancers are generally classified into better differentiated intestinal-type tumor and poorly differentiated diffuse-type one according to Lauren's histological categorization. Although induction of prostaglandin E2 pathway promotes gastric tumors in mice in cooperation with deregulated Wnt or BMP signalings, it has remained unresolved whether the gastric tumor mouse models recapitulate eit...... hiện toàn bộ
Metagenomic sequencing revealed the potential of banknotes as a repository of microbial genes
Springer Science and Business Media LLC - Tập 22 - Trang 1-10 - 2021
Jun Lin, Wenqian Jiang, Lin Chen, Huilian Zhang, Yang Shi, Xin Liu, Weiwen Cai
Genetic resources are important natural assets. Discovery of new enzyme gene sequences has been an ongoing effort in biotechnology industry. In the genomic age, genomes of microorganisms from various environments have been deciphered. Increasingly, it has become more and more difficult to find novel enzyme genes. In this work, we attempted to use the easily accessible banknotes to search for novel...... hiện toàn bộ
Comparative genomics applied to Mucor species with different lifestyles
Springer Science and Business Media LLC - Tập 21 - Trang 1-21 - 2020
Annie Lebreton, Erwan Corre, Jean-Luc Jany, Loraine Brillet-Guéguen, Carlos Pèrez-Arques, Victoriano Garre, Misharl Monsoor, Robert Debuchy, Christophe Le Meur, Emmanuel Coton, Georges Barbier, Laurence Meslet-Cladière
Despite a growing number of investigations on early diverging fungi, the corresponding lineages have not been as extensively characterized as Ascomycota or Basidiomycota ones. The Mucor genus, pertaining to one of these lineages is not an exception. To this date, a restricted number of Mucor annotated genomes is publicly available and mainly correspond to the reference species, Mucor circinelloide...... hiện toàn bộ
Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation
Springer Science and Business Media LLC - Tập 8 - Trang 1-17 - 2007
Christine Stansberg, Audun Osland Vik-Mo, Rita Holdhus, Harald Breilid, Boleslaw Srebro, Kjell Petersen, Hugo A Jørgensen, Inge Jonassen, Vidar M Steen
The mammalian brain is divided into distinct regions with structural and neurophysiological differences. As a result, gene expression is likely to vary between regions in relation to their cellular composition and neuronal function. In order to improve our knowledge and understanding of regional patterns of gene expression in the CNS, we have generated a global map of gene expression in selected r...... hiện toàn bộ
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