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Genomic features and computational identification of human microRNAs under long-range developmental regulation
Springer Science and Business Media LLC - Tập 12 Số 1 - 2011
Ying Sheng, Christopher Previti
A bioinformatic survey of RNA-binding proteins in Plasmodium
Springer Science and Business Media LLC - Tập 16 - Trang 1-26 - 2015
BP Niranjan Reddy, Sony Shrestha, Kevin J. Hart, Xiaoying Liang, Karen Kemirembe, Liwang Cui, Scott E. Lindner
The malaria parasites in the genus Plasmodium have a very complicated life cycle involving an invertebrate vector and a vertebrate host. RNA-binding proteins (RBPs) are critical factors involved in every aspect of the development of these parasites. However, very few RBPs have been functionally characterized to date in the human parasite Plasmodium falciparum. Using different bioinformatic methods...... hiện toàn bộ
Recent CR1 non-LTR retrotransposon activity in coscoroba reveals an insertion site preference
Springer Science and Business Media LLC - Tập 9 - Trang 1-6 - 2008
Judy St John, Thomas W Quinn
Chicken repeat 1 (CR1) is a taxonomically widespread non-LTR retrotransposon. Insertion site bias, or lack thereof, has not been demonstrated for CR1. Recent CR1 retrotranspositions were used to examine flanking regions for GC content and nucleotide bias at the insertion site. Elucidation of the exact octomer repeat sequence (TTCTGTGA) allowed for the identification of younger insertion events. Th...... hiện toàn bộ
Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don
Springer Science and Business Media LLC - - 2009
Xinguo Li, Harry X. Wu, Shannon Dillon, Simon G. Southerton
Abstract Background Wood is a major renewable natural resource for the timber, fibre and bioenergy industry. Pinus radiata D. Don is the most important commercial plantation tree species in Australia and several other countries; however, genomic resources for this speci...... hiện toàn bộ
Anti-masculinization induced by aromatase inhibitors in adult female zebrafish
Springer Science and Business Media LLC - Tập 21 - Trang 1-10 - 2020
Lu Chen, Li Wang, Qiwei Cheng, Yi-Xuan Tu, Zhuang Yang, Run-Ze Li, Zhi-Hui Luo, Zhen-Xia Chen
Early sex differentiation genes of zebrafish remain an unsolved mystery due to the difficulty to distinguish the sex of juvenile zebrafish. However, aromatase inhibitors (AIs) could direct juvenile zebrafish sex differentiation to male and even induce ovary-to-testis reversal in adult zebrafish. In order to determine the transcriptomic changes of sex differentiation in juvenile zebrafish and early...... hiện toàn bộ
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
Springer Science and Business Media LLC - Tập 19 - Trang 1-16 - 2018
Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit
Single-cell transcriptomics allows researchers to investigate complex communities of heterogeneous cells. It can be applied to stem cells and their descendants in order to chart the progression from multipotent progenitors to fully differentiated cells. While a variety of statistical and computational methods have been proposed for inferring cell lineages, the problem of accurately characterizing ...... hiện toàn bộ
WUSCHEL-related Homeobox genes in Populus tomentosa: diversified expression patterns and a functional similarity in adventitious root formation
Springer Science and Business Media LLC - Tập 15 - Trang 1-14 - 2014
Bobin Liu, Lin Wang, Jin Zhang, Jianbo Li, Huanquan Zheng, Jun Chen, Mengzhu Lu
WUSCHEL (WUS)-related homeobox (WOX) protein family members play important roles in the maintenance and proliferation of the stem cell niche in the shoot apical meristem (SAM), root apical meristem (RAM), and cambium (CAM). Although the roles of some WOXs in meristematic cell regulation have been well studied in annual plants such as Arabidopsis and rice, the expression and function of WOX members...... hiện toàn bộ
Genome-wide analysis of LTR-retrotransposons in oil palm
Springer Science and Business Media LLC - Tập 16 - Trang 1-14 - 2015
Thierry Beulé, Mawussé DT Agbessi, Stephane Dussert, Estelle Jaligot, Romain Guyot
The oil palm (Elaeis guineensis Jacq.) is a major cultivated crop and the world’s largest source of edible vegetable oil. The genus Elaeis comprises two species E. guineensis, the commercial African oil palm and E. oleifera, which is used in oil palm genetic breeding. The recent publication of both the African oil palm genome assembly and the first draft sequence of its Latin American relative now...... hiện toàn bộ
Transcriptome analysis reveals unique metabolic features in the Cryptosporidium parvum Oocysts associated with environmental survival and stresses
Springer Science and Business Media LLC - Tập 13 - Trang 1-15 - 2012
Haili Zhang, Fengguang Guo, Huaijun Zhou, Guan Zhu
Cryptosporidium parvum is a globally distributed zoonotic parasite and an important opportunistic pathogen in immunocompromised patients. Little is known on the metabolic dynamics of the parasite, and study is hampered by the lack of molecular and genetic tools. Here we report the development of the first Agilent microarray for C. parvum (CpArray15K) that covers all predicted ORFs in the parasite ...... hiện toàn bộ
Proposing a highly accurate protein structural class predictor using segmentation-based features
Springer Science and Business Media LLC - Tập 15 - Trang 1-13 - 2014
Abdollah Dehzangi, Kuldip Paliwal, James Lyons, Alok Sharma, Abdul Sattar
Prediction of the structural classes of proteins can provide important information about their functionalities as well as their major tertiary structures. It is also considered as an important step towards protein structure prediction problem. Despite all the efforts have been made so far, finding a fast and accurate computational approach to solve protein structural class prediction problem still...... hiện toàn bộ
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