Marilyn J. Roossinck, Darren P. Martin, Philippe Roumagnac
In recent years plant viruses have been detected from many environments, including domestic and wild plants and interfaces between these systems—aquatic sources, feces of various animals, and insects. A variety of methods have been employed to study plant virus biodiversity, including enrichment for virus-like particles or virus-specific RNA or DNA, or the extraction of total nucleic acids, followed by next-generation deep sequencing and bioinformatic analyses. All of the methods have some shortcomings, but taken together these studies reveal our surprising lack of knowledge about plant viruses and point to the need for more comprehensive studies. In addition, many new viruses have been discovered, with most virus infections in wild plants appearing asymptomatic, suggesting that virus disease may be a byproduct of domestication. For plant pathologists these studies are providing useful tools to detect viruses, and perhaps to predict future problems that could threaten cultivated plants.
M. Maurhofer, Cornelia Reimmann, P. Schmidli-Sacherer, Stephan Heeb, Dieter Haas, Geneviève Défago
Application of salicylic acid induces systemic acquired resistance in tobacco. pchA and pchB, which encode for the biosynthesis of salicylic acid in Pseudomonas aeruginosa, were cloned into two expression vectors, and these constructs were introduced into two root-colonizing strains of P. fluorescens. Introduction of pchBA into strain P3, which does not produce salicylic acid, rendered this strain capable of salicylic acid production in vitro and significantly improved its ability to induce systemic resistance in tobacco against tobacco necrosis virus. Strain CHA0 is a well-described biocontrol agent that naturally produces salicylic acid under conditions of iron limitation. Introduction of pchBA into CHA0 increased the production of salicylic acid in vitro and in the rhizosphere of tobacco, but did not improve the ability of CHA0 to induce systemic resistance in tobacco. In addition, these genes did not improve significantly the capacity of strains P3 and CHA0 to suppress black root rot of tobacco in a gnotobiotic system.
L.P.N.M. Kroon, Henk J. Brouwer, Arthur W. A. M. de Cock, Francine Govers
Plant diseases caused by Phytophthora species will remain an ever increasing threat to agriculture and natural ecosystems. Phytophthora literally means plant destroyer, a name coined in the 19th century by Anton de Bary when he investigated the potato disease that set the stage for the Great Irish Famine. Phytophthora infestans, the causal agent of potato late blight, was the first species in a genus that at present has over 100 recognized members. In the last decade, the number of recognized Phytophthora species has nearly doubled and new species are added almost on a monthly basis. Here we present an overview of the 10 clades that are currently distinguished within the genus Phytophthora with special emphasis on new species that have been described since 1996 when Erwin and Ribeiro published the valuable monograph ‘Phytophthora diseases worldwide’ (35).
Guihua Bai, F. L. Kolb, Gregory Shaner, Leslie L. Domier
Scab is a destructive disease of wheat. To accelerate development of scab-resistant wheat cultivars, molecular markers linked to scab resistance genes have been identified by using recombinant inbred lines (RILs) derived by single-seed descent from a cross between the resistant wheat cultivar Ning 7840 (resistant to spread of scab within the spike) and the susceptible cultivar Clark. In the greenhouse, F5, F6, F7, and F10 families were evaluated for resistance to spread of scab within a spike by injecting about 1,000 conidiospores of Fusarium graminearum into a central spikelet. Inoculated plants were kept in moist chambers for 3 days to promote initial infection and then transferred to greenhouse benches. Scab symptoms were evaluated four times (3, 9, 15, and 21 days after inoculation). The frequency distribution of scab severity indicated that resistance to spread of scab within a spike was controlled by a few major genes. DNA was isolated from both parents and F9 plants of the 133 RILs. A total of 300 combinations of amplified fragment length polymorphism (AFLP) primers were screened for polymorphisms using bulked segregant analysis. Twenty pairs of primers revealed at least one polymorphic band between the two contrasting bulks. The segregation of each of these bands was evaluated in the 133 RILs. Eleven AFLP markers showed significant association with scab resistance, and an individual marker explained up to 53% of the total variation (R2). The markers with high R2 values mapped to a single linkage group. By interval analysis, one major quantitative trait locus for scab resistance explaining up to 60% of the genetic variation for scab resistance was identified. Some of the AFLP markers may be useful in marker-assisted breeding to improve resistance to scab in wheat.
Penicillium digitatum isolates (326), collected in California citrus groves and packinghouses, were assayed qualitatively for their sensitivity to imazalil, thiabendazole, and o-phenylphenol. Eighteen typical triple-resistant isolates, acquired in each of 3 years (1988, 1990, and 1994), were assayed quantitatively for their sensitivity to each of the three fungicides. No significant differences were found in the mean sensitivity of the isolates collected in different years. However, the proportion of isolates that were resistant to all three fungicides increased from 43% in 1988 to 77% in 1990 and 74% in 1994. Imazalil-resistant biotypes of P. digitatum were isolated frequently in California packinghouses, while resistant P. italicum was rare. No fungicide-resistant biotypes of either species were collected from citrus groves. Wild-type P. italicum was slightly less sensitive than wild-type P. digitatum to all three fungicides. The concentration of imazalil producing 50% growth inhibition (EC50) was three times greater when the age of the P. digitatum assay inoculum was increased from 12 to 24 h. Activity of imazalil increased with pH of the assay medium in the range pH 5.1 to 5.9, reflecting the greater concentration of dissociated imazalil at the higher pH value.