New Phytologist

Assessment of infection is an essential part of many studies involving VA mycorrhiza. A summary is given of the range of techniques that have been used. We calculated the standard error of four methods of assessment based on observations of stained root samples either randomly arranged in a petri dish or mounted on microscope slides. The methods are based on presence or absence of infection at root/grid intersect points, on a visual estimate of percentage cortex occupied by fungus or on estimates of length, or presence or absence of infection in root pieces mounted on slides. The number of replicate observations required for a given standard error % infection can be read from the curves provided. The advantages of the different methods of assessment are discussed and reasons given why they all probably overestimate the true values.

Severe droughts have been associated with regional‐scale forest mortality worldwide. Climate change is expected to exacerbate regional mortality events; however, prediction remains difficult because the physiological mechanisms underlying drought survival and mortality are poorly understood. We developed a hydraulically based theory considering carbon balance and insect resistance that allowed development and examination of hypotheses regarding survival and mortality. Multiple mechanisms may cause mortality during drought. A common mechanism for plants with isohydric regulation of water status results from avoidance of drought‐induced hydraulic failure via stomatal closure, resulting in carbon starvation and a cascade of downstream effects such as reduced resistance to biotic agents. Mortality by hydraulic failure per se may occur for isohydric seedlings or trees near their maximum height. Although anisohydric plants are relatively drought‐tolerant, they are predisposed to hydraulic failure because they operate with narrower hydraulic safety margins during drought. Elevated temperatures should exacerbate carbon starvation and hydraulic failure. Biotic agents may amplify and be amplified by drought‐induced plant stress. Wet multidecadal climate oscillations may increase plant susceptibility to drought‐induced mortality by stimulating shifts in hydraulic architecture, effectively predisposing plants to water stress. Climate warming and increased frequency of extreme events will probably cause increased regional mortality episodes. Isohydric and anisohydric water potential regulation may partition species between survival and mortality, and, as such, incorporating this hydraulic framework may be effective for modeling plant survival and mortality under future climate conditions.

Contents Summary 1 I. Introduction 2 II.  Consequences of vegetation mortality 3 III. Global patterns of mortality 3 IV. Hypotheses on mechanisms of drought‐related mortality 4 V. Evidence for hypothesized mechanisms 5 VI. Implications of future climate on hypothesized mortality mechanisms 13 VII. Conclusions 15 Acknowledgements 15 References 15

Previously described methods to quantify the proportion of root length colonized by vesicular‐arbuscular (VA) mycorrhizal fungi are reviewed. It is argued that these methods give observer‐dependent measures of colonization which cannot be used to compare, quantitatively, roots examined by different researchers. A modified method is described here to estimate VA mycorrhizal colonization on an objective scale of measurement, involving inspection of intersections between the microscope eyepiece crosshair and roots at magnification × 200; it is referred to as the magnified intersections method. Whether the vertical eyepiece crosshair crosses one or more arbuscules is noted at each intersection. The estimate of colonization is the proportion of root length containing arbuscules, called the arbuscular colonization (AC). The magnified intersections method also determines the proportion of root length containing vesicles, the vesicular colonization (VC), and the proportion of root length containing hyphae, the hyphal colonization (HC). However, VC and HC should be interpreted with caution because vesicles and hyphae, unlike arbuscules, can be produced in roots by non‐mycorrhizal fungi.

Seed dormancy is an innate seed property that defines the environmental conditions in which the seed is able to germinate. It is determined by genetics with a substantial environmental influence which is mediated, at least in part, by the plant hormones abscisic acid and gibberellins. Not only is the dormancy status influenced by the seed maturation environment, it is also continuously changing with time following shedding in a manner determined by the ambient environment. As dormancy is present throughout the higher plants in all major climatic regions, adaptation has resulted in divergent responses to the environment. Through this adaptation, germination is timed to avoid unfavourable weather for subsequent plant establishment and reproductive growth. In this review, we present an integrated view of the evolution, molecular genetics, physiology, biochemistry, ecology and modelling of seed dormancy mechanisms and their control of germination. We argue that adaptation has taken place on a theme rather than via fundamentally different paths and identify similarities underlying the extensive diversity in the dormancy response to the environment that controls germination.

Contents Summary 501 I. Introduction 502 II. What is dormancy and how is it related to germination? 502 III. How is nondeep physiological dormancy regulated within the seed at the molecular level? 509 IV. How is nondeep physiological seed dormancy regulated by the  environment? Ecophysiology and modelling 514 V. Conclusions and perspectives 518 Acknowledgements 519 References 519 Supplementary material 523

Phosphorus (P) is limiting for crop yield on > 30% of the world's arable land and, by some estimates, world resources of inexpensive P may be depleted by 2050. Improvement of P acquisition and use by plants is critical for economic, humanitarian and environmental reasons. Plants have evolved a diverse array of strategies to obtain adequate P under limiting conditions, including modifications to root architecture, carbon metabolism and membrane structure, exudation of low molecular weight organic acids, protons and enzymes, and enhanced expression of the numerous genes involved in low‐P adaptation. These adaptations may be less pronounced in mycorrhizal‐associated plants. The formation of cluster roots under P‐stress by the nonmycorrhizal species white lupin (Lupinus albus), and the accompanying biochemical changes exemplify many of the plant adaptations that enhance P acquisition and use. Physiological, biochemical, and molecular studies of white lupin and other species response to P‐deficiency have identified targets that may be useful for plant improvement. Genomic approaches involving identification of expressed sequence tags (ESTs) found under low‐P stress may also yield target sites for plant improvement. Interdisciplinary studies uniting plant breeding, biochemistry, soil science, and genetics under the large umbrella of genomics are prerequisite for rapid progress in improving nutrient acquisition and use in plants. Contents I. Introduction 424 II. The phosphorus conundrum 424 III. Adaptations to low P 424 IV. Uptake of P 424 V. P deficiency alters root development and function 426 VI. P deficiency modifies carbon metabolism 431 VII. Acid phosphatase 436 VIII. Genetic regulation of P responsive genes 437 IX. Improving P acquisition 439 X. Synopsis 440

Contents Summary 945 I. Introduction 946 II. Growth and osmotic adjustment 946 III. Uptake and transport of monovalent ions 950 IV. Conclusions and perspectives 956 Acknowledgements 957 References 959

We quantified the biomass allocation patterns to leaves, stems and roots in vegetative plants, and how this is influenced by the growth environment, plant size, evolutionary history and competition. Dose–response curves of allocation were constructed by means of a meta‐analysis from a wide array of experimental data. They show that the fraction of whole‐plant mass represented by leaves (LMF) increases most strongly with nutrients and decreases most strongly with light. Correction for size‐induced allocation patterns diminishes the LMF‐response to light, but makes the effect of temperature on LMF more apparent. There is a clear phylogenetic effect on allocation, as eudicots invest relatively more than monocots in leaves, as do gymnosperms compared with woody angiosperms. Plants grown at high densities show a clear increase in the stem fraction. However, in most comparisons across species groups or environmental factors, the variation in LMF is smaller than the variation in one of the other components of the growth analysis equation: the leaf area : leaf mass ratio (SLA). In competitive situations, the stem mass fraction increases to a smaller extent than the specific stem length (stem length : stem mass). Thus, we conclude that plants generally are less able to adjust allocation than to alter organ morphology.

Contents Summary 30 I. Allocation in perspective 31 II. Topics of this review 32 III. Methodology 32 IV. Environmental effects 33 V. Ontogeny 36 VI. Differences between species 40 VII. Physiology and molecular regulation 41 VIII. Ecological aspects 42 IX. Perspectives 45 Acknowledgements 45 References 45 Appendices A1–A4 49

Nitrogen (N) and phosphorus (P) availability limit plant growth in most terrestrial ecosystems. This review examines how variation in the relative availability of N and P, as reflected by N : P ratios of plant biomass, influences vegetation composition and functioning. Plastic responses of plants to N and P supply cause up to 50‐fold variation in biomass N : P ratios, associated with differences in root allocation, nutrient uptake, biomass turnover and reproductive output. Optimal N : P ratios – those of plants whose growth is equally limited by N and P – depend on species, growth rate, plant age and plant parts. At vegetation level, N : P ratios <10 and >20 often (not always) correspond to N‐ and P‐limited biomass production, as shown by short‐term fertilization experiments; however long‐term effects of fertilization or effects on individual species can be different. N : P ratios are on average higher in graminoids than in forbs, and in stress‐tolerant species compared with ruderals; they correlate negatively with the maximal relative growth rates of species and with their N‐indicator values. At vegetation level, N : P ratios often correlate negatively with biomass production; high N : P ratios promote graminoids and stress tolerators relative to other species, whereas relationships with species richness are not consistent. N : P ratios are influenced by global change, increased atmospheric N deposition, and conservation managment.

Contents Summary 243 I Introduction 244 II Variability of N : P ratios in response to nutrient  supply 244 III Critical N : P ratios as indicators of nutrient  limitation 248 IV Interspecific variation in N : P ratios 252 V Vegetation properties in relation to N : P ratios 255 VI Implications of N : P ratios for human impacts  on ecosystems 258 VII Conclusions 259 Acknowledgements 259 References 260

A great diversity of plants and fungi engage in mycorrhizal associations. In natural habitats, and in an ecologically meaningful time span, these associations have evolved to improve the fitness of both plant and fungal symbionts. In systems managed by humans, mycorrhizal associations often improve plant productivity, but this is not always the case. Mycorrhizal fungi might be considered to be parasitic on plants when net cost of the symbiosis exceeds net benefits. Parasitism can be developmentally induced, environmentally induced, or possibly genotypically induced. Morphological, phenological, and physiological characteristics of the symbionts influence the functioning of mycorrhizas at an individual scale. Biotic and abiotic factors at the rhizosphere, community, and ecosystem scales further mediate mycorrhizal functioning. Despite the complexity of mycorrhizal associations, it might be possible to construct predictive models of mycorrhizal functioning. These models will need to incorporate variables and parameters that account for differences in plant responses to, and control of, mycorrhizal fungi, and differences in fungal effects on, and responses to the plant. Developing and testing quantitative models of mycorrhizal functioning in the real world requires creative experimental manipulations and measurements. This work will be facilitated by recent advances in molecular and biochemical techniques. A greater understanding of how mycorrhizas function in complex natural systems is a prerequisite to managing them in agriculture, forestry, and restoration.