MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization Tập 20 Số 4 - Trang 1160-1166 - 2019
Kazutaka Katoh, John Rozewicki, Kazunori Yamada
AbstractThis article describes several features in the MAFFT online service for multiple sequence alignment (MSA). As a result of recent advances in sequencing technologies, huge numbers of biological sequences are available and the need for MSAs with large numbers of sequences is increasing. To extract biologically relevant information from such data, sophistication of algorithms is necessary but not sufficient. Intuitive and interactive tools for experimental biologists to semiautomatically handle large data are becoming important. We are working on development of MAFFT toward these two directions. Here, we explain (i) the Web interface for recently developed options for large data and (ii) interactive usage to refine sequence data sets and MSAs.
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis Tập 14 Số 6 - Trang 671-683 - 2013
Marie‐Agnès Dillies, Andrea Rau, Julie Aubert, Christelle Hennequet-Antier, Marine Jeanmougin, Nicolas Servant, Céline Keime, Guillemette Marot, David Castel, Jordi Estellé, Grégory Guernec, Bernd Jagla, Rute A. Tomaz, Dénis Laloë, Caroline Le Gall, Brigitte Schaeffer, Stéphane Le Crom, Mickaël Guedj, Florence Jaffrézic
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology Tập 11 Số 1 - Trang 40-79 - 2010
Peter D. Karp, Suzanne Paley, Markus Krummenacker, Mario Latendresse, J. M. Dale, T. J. Lee, P. Kaipa, Fred Gilham, Aaron Spaulding, Liviu Popescu, Tomer Altman, Ian T. Paulsen, Ingrid M. Keseler, Ron Caspi