UnmaskingAureliaspecies in the Mediterranean Sea: an integrative morphometric and molecular approach
Tóm tắt
Từ khóa
Tài liệu tham khảo
Abramoff, 2004, Image processing with ImageJ, Biophotonics International, 11, 36
Allison, 1995, Statistical considerations regarding the use of ratios to adjust data, International journal of obesity and related metabolic disorders, 19, 644
Anderson, 2001, Permutation tests for univariate or multivariate analysis of variance and regression, Canadian Journal of Fisheries and Aquatic Science, 58, 626, 10.1139/f01-004
Anderson, 2003, Canonical analysis of principal coordinates: a useful method of constrained ordination for ecology, Ecology, 84, 511, 10.1890/0012-9658(2003)084[0511:CAOPCA]2.0.CO;2
Appeltans, 2012, The magnitude of global marine species diversity, Current Biology, 22, 2189, 10.1016/j.cub.2012.09.036
Arai, 1997, A functional biology of Scyphozoa
Bayha, 2010, New family of allomorphic jellyfishes, Drymonematidae (Scyphozoa, Discomedusae), emphasizes evolution in the functional morphology and trophic ecology of gelatinous zooplankton, The Biological Bulletin, 219, 249, 10.1086/BBLv219n3p249
Bayha, 2010, Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA, Integrative and Comparative Biology, 50, 436, 10.1093/icb/icq074
Bazinet, 2014, A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0, Systematic Biology, 63, 812, 10.1093/sysbio/syu031
Belmonte, 2011, Zooplankton composition in Lake Varano (Adriatic Sea coast, Italy), Italian Journal of Zoology, 78, 370, 10.1080/11250003.2011.561261
Benović, 2000, Ecological characteristics of the Mljet Island Sea water lakes (Southern Adriatic Sea) with special reference to their resident populations of medusae, Scientia Marina, 64, 197, 10.3989/scimar.2000.64s1197
Bianchi, 2000, Marine biodiversity of the Mediterranean Sea: situation, problems and prospects for future research, Marine Pollution Bulletin, 40, 367, 10.1016/S0025-326X(00)00027-8
Boero, 2008, Gelatinous plankton: irregularities rule the world (sometimes), Marine Ecology Progress Series, 356, 299, 10.3354/meps07368
Bonnet, 2012, Seasonal changes in the population dynamics of Aurelia aurita in Thau lagoon, Cahiers de Biologie Marine, 53, 343
Boudouresque, 2011, Global change: mankind-marine environment interactions, 151
Brotz, 2012, Increasing jellyfish populations: trends in Large Marine Ecosystems, Hydrobiologia, 690, 3, 10.1007/s10750-012-1039-7
Browne, 1905, Scyphomedusae, The Fauna and Geography of the Maldive and Laccadiv Archepelagos, 2, 958
Cataudella, 2011, The state of Italian marine fisheries and aquaculture, 620
Clarke, 2001, Change in marine communities: an approach to statistical analysis and interpretation, 2
Coll, 2010, The biodiversity of the Mediterranean Sea: estimates, patterns and threats, PLoS ONE, 5, 1, 10.1371/journal.pone.0011842
Daly Yahia, 2013, The invasive tropical scyphozoan Rhopilema nomadica Galil, 1990 reaches the Tunisian coast of the Mediterranean Sea, BioInvasions Records, 2, 319, 10.3391/bir.2013.2.4.10
Darriba, 2012, jModelTest 2: more models, new heuristics and parallel computing, Nature Methods, 9, 772, 10.1038/nmeth.2109
Dawson, 2003, Macro-morphological variation among cryptic species of the moon jellyfish, Aurelia (Cnidaria: Scyphozoa), Marine Biology, 143, 369, 10.1007/s00227-003-1070-3
Dawson, 2005, Incipient speciation of Catostylus mosaicus (Scyphozoa, Rhizostomeae, Catostylidae), comparative phylogeography and biogeography in south-east Australia, Journal of Biogeography, 32, 515, 10.1111/j.1365-2699.2004.01193.x
Dawson, 2009, A character-based analysis of the evolution of jellyfish blooms: adaptation and exaptation, Hydrobiologia, 616, 193, 10.1007/s10750-008-9591-x
Dawson, 2001, Molecular evidence for cryptic species of Aurelia aurita (Cnidaria, Scyphozoa), Biological Bullettin, 200, 92, 10.2307/1543089
Dawson, 2001, Geographic variation and ecological adaptation in Aurelia (Scyphozoa, Semaeostomeae): some implications from molecular phylogenetics, Hydrobiologia, 451, 259, 10.1023/A:1011869215330
Dawson, 1998, Field preservation of marine invertebrate tissues for DNA analyses, Molecular Marine Biology and Biotechnology, 7, 145
Dawson, 2005, Coupled biophysical global ocean model and molecular genetic analyses identify multiple introductions of cryptogenic species, Proceedings of National Academy of Sciences, 102, 11968, 10.1073/pnas.0503811102
De Queiroz, 1992, Phylogenetic taxonomy, Annual Review of Ecology and Systematics, 23, 449, 10.1146/annurev.es.23.110192.002313
Deidun, 2011, The westernmost record of Rhopilema nomadic (Galil, 1990) in the Mediterranean - off the Maltese Islands, Aquatic Invasions, 6, S99, 10.3391/ai.2011.6.S1.023
DeSalle, 2005, The unholy trinity: taxonomy, species delimitation and DNA barcoding, Philosophical Transaction of the Royal Society B, 360, 1905, 10.1098/rstb.2005.1722
Di Camillo, 2010, Contribution to the understanding of seasonal cycle of Aurelia aurita (Cnidaria: Scyphozoa) scyphopolyps in the northern Adriatic Sea, Journal of the Marine Biological Association of the United Kingdom, 90, 1105, 10.1017/S0025315409000848
Drummond, 2012, Bayesian phylogenetics with BEAUti and the BEAST 1.7, Molecular Biology and Evolution, 29, 1969, 10.1093/molbev/mss075
Felsenstein, 1985, Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678
Folmer, 1994, DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates, Molecular Marine Biology and Biotechnology, 3, 294
Fontaine, 2012, New Species in the Old World: Europe as a frontier in biodiversity exploration, a test bed for 21st century taxonomy, PLoS ONE, 7, e36881, 10.1371/journal.pone.0036881
Fuchs, 2014, Regulation of Polyp-to-Jellyfish transition in Aurelia aurita, Current Biology, 24, 1, 10.1016/j.cub.2013.12.003
Galil, 2012, Truth and consequences: the bioinvasion of the Mediterranean Sea, Integrative Zoology, 7, 299, 10.1111/j.1749-4877.2012.00307.x
Galil, 1990, The scyphomedusae of the Mediterranean coast of Israel, including two Lessepsian migrants new to the Mediterranean, Zoologische Mededelingen (Leiden), 64, 95
Galil, 2010, Marivagia stellata gen. et sp. nov. (Scyphozoa: Rhizostomeae: Cepheidae), another alien jellyfish from the Mediterranean coast of Israel, Aquatic Invasions, 5, 331, 10.3391/ai.2010.5.4.01
Galil, 2013, Marivagia stellata Galil and Gershwin, 2010 (Scyphozoa: Rhizostomeae: Cepheidae), found off the coast of Kerala, India, BioInvasions Records, 2, 317, 10.3391/bir.2013.2.4.09
Galil, 2015, “Double trouble”: the expansion of the Suez Canal and marine bioinvasions in the Mediterranean Sea, Biological Invasions, 17, 973, 10.1007/s10530-014-0778-y
Gambill, 2014, Can Aurelia (Cnidaria, Scyphozoa) species be differentiated by comparing their scyphistomae and ephyrae?, European Journal of Taxonomy, 107, 1
Gershwin, 2001, Systematics and biogeography of the jellyfish Aurelia labiata (Cnidaria: Scyphozoa), Biological Bullettin, 201, 104, 10.2307/1543531
Gershwin, 2002, A preliminary phylogeny of Pelagiidae (Cnidaria, Scyphozoa), with new observations of Chrysaora colorata comb. nov, Journal of Natural History, 36, 127, 10.1080/00222930010003819
Gröndahl, 1987, Release and growth of Cyanea capillata (L.) ephyrae in the Gullmar Fjord, Western Sweden, Journal of Experimental Marine Biology and Ecology, 106, 91, 10.1016/0022-0981(87)90149-3
Guindon, 2003, A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood, Systematic Biology, 52, 696, 10.1080/10635150390235520
Hebert, 2003, Biological identifications through DNA barcodes, Proceedings of Royal Society B, 270, 313, 10.1098/rspb.2002.2218
Heled, 2010, Bayesian inference of species trees from multilocus data, Molecular Biology and Evolution, 27, 570, 10.1093/molbev/msp274
Hérouard, 1909, Sur les cycles évolutifs d'un Scyphistome, Comptes Rendus de L'Académie des Sciences (Paris), 148, 320
Hewitt, 2004, Introduced and cryptogenic species in Port Phillip Bay, Victoria, Australia, Marine Biology, 144, 183, 10.1007/s00227-003-1173-x
Ki, 2008, Recent moon jelly (Aurelia sp. 1) blooms in Korean coastal waters suggest global expansion: examples inferred from mitochondrial COI and nuclear ITS-5.8S rDNA sequences, ICES Journal of Marine Science, 65, 443, 10.1093/icesjms/fsn018
Kimura, 1980, A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences, Journal of Molecular Evolution, 16, 111, 10.1007/BF01731581
Kishinouye, 1891, Aurelia japonica, nov. sp, Zoological Magazine (Tokyo), 3, 288
Kramp, 1961, Synopsis of the medusae of the world, Journal of the Marine Biological Association of the United Kingdom, 40, 1, 10.1017/S0025315400007347
Kramp, 1968, The scyphomedusae collected by the Galathea expedition 1950-52, Videnskabelige Meddelelser fra den Naturhistoriske Forening i Kjöbenhavn, 131, 67
Kuniyoshi, 2012, Indomethacin induction of metamorphosis from the asexual stage to sexual stage in the moon jellyfish, Aurelia aurita, Bioscience, Biotechnology and Biochemistry, 76, 1397, 10.1271/bbb.120076
Lanfear, 2012, PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses, Molecular Biology and Evolution, 29, 1695, 10.1093/molbev/mss020
Lee, 2013, Identification of genetically and oceanographically distinct blooms of jellyfish, Journal of the Royal Society Interface, 10, 20120920, 10.1098/rsif.2012.0920
Lejeusne, 2010, Climate change effects on a miniature ocean: the highly diverse, highly impacted Mediterranean Sea, Trends in Ecology & Evolution, 25, 250, 10.1016/j.tree.2009.10.009
Lendenfeld, 1884, The scyphomedusae of the southern hemi-sphere. Part III.-Conclusion. IV. Ordo-Discomedusae, Proceedings of the Linnean Society of New South Wales, 9, 259
Maddison, 2005, MacClade 4: analysis of phylogeny and character evolution. Version 4.08a, The American Biology Teacher, 66, 511
Marques, 2015a, Pelagic population dynamics of Aurelia sp. in French Mediterranean lagoons, Journal of Plankton Research, 37, 1019, 10.1093/plankt/fbv059
Marques, 2015b, Mapping distribution and habitats of Aurelia sp. polyps in Thau lagoon, north-western Mediterranean Sea (France), Marine Biology, 162, 1441, 10.1007/s00227-015-2680-2
Martin, 1997, Chrysaora achlyos, a remarkable new species of scyphozoan from the eastern Pacific, Biological Bulletin, 193, 8, 10.2307/1542731
Mayer, 1910, Medusae of the world, III: the Scyphomedusae, Carnegie Institute, Washington, 109, 499
Mishler, 2000, Species concepts and phylogenetic theory, 44
Miyake, 2002, On the polyps of the common jellyfish Aurelia aurita in Kagoshima Bay, Journal of Oceanography, 58, 451, 10.1023/A:1021628314041
Mooney, 2001, The evolutionary impact of invasive species, Proceedings of National Academy of Sciences, 98, 5446, 10.1073/pnas.091093398
Morandini, 2010, Revision of the genus Chrysaora Péron & Lesueur, 1810 (Cnidaria: Scyphozoa), Zootaxa, 97, 1, 10.11646/zootaxa.2464.1.1
Nakanishi, 2009, Development of the rhopalial nervous system in Aurelia sp. 1 (Cnidaria, Scyphozoa), Developmental Genetics and Evolution, 219, 301, 10.1007/s00427-009-0291-y
Occhipinti-Ambrogi, 2011, Alien species along the Italian coasts: an overview, Biological Invasions, 13, 215, 10.1007/s10530-010-9803-y
Ortman, 2010, DNA barcoding the Medusozoa using mtCOI, Deep-Sea Research II, 57, 2148, 10.1016/j.dsr2.2010.09.017
Padial, 2010, Review: the integrative future of taxonomy, Frontiers in Zoology, 7, 1, 10.1186/1742-9994-7-16
Papathanassiou, 1987, Notes on the biology of the jellyfish Aurelia aurita Lam. in Elefsis Bay (SaronikosGulf, Greece), Marine Ecology, 8, 49, 10.1111/j.1439-0485.1987.tb00174.x
Piraino, 2004, Reverse development in Cnidaria, Canadian Journal of Zoology, 82, 1748, 10.1139/z04-174
Piraino, 2014, Pelagia benovici sp. nov. (Cnidaria, Scyphozoa): a new jellyfish in the Mediterranean Sea, Zootaxa, 3794, 455, 10.11646/zootaxa.3794.3.7
Ramšak, 2012, Comparative phylogeography of meroplanktonic species, Aurelia spp. and Rhizostoma pulmo (Cnidaria: Scyphozoa) in European Seas, Hydrobiologia, 690, 69, 10.1007/s10750-012-1053-9
Rao, 1931, Notes on Scyphomedusae in the Indian Museum, Records of the Indian Museum, 33, 25
Russell, 1970, The Medusae of the British Isles. II Pelagic Scyphozoa, with a supplement to the first volume on Hydromedusae, 284
Schafer, 1878, Observations on the nervous system of Aurelia aurita, Philosophical Transactions of the Royal Society London, 169, 563, 10.1098/rstl.1878.0017
Schroth, 2002, Speciation and phylogeography in the cosmopolitan marine moon jelly, Aurelia sp, BMC Evolutionary Biology, 2, 1, 10.1186/1471-2148-2-1
Scorrano S 2014 Impacts of Aurelia sp. 1 outbreaks in Mediterranean coastal lagoon (Varano, SE Adriatic Coast) Viterbo, Italy Università degli Studi della Tuscia
Shaltout, 2014, Recent sea surface temperature trends and future scenarios for the Mediterranean Sea, Oceanologia, 56, 411, 10.5697/oc.56-3.411
Straehler-Pohl, 2010, Identification key for young ephyrae: a first step for early detection of jellyfish blooms, Hydrobiologia, 645, 3, 10.1007/s10750-010-0226-7
Straehler-Pohl, 2011, Characterizations of juvenile stages of some semaeostome Scyphozoa (Cnidaria), with recognition of a new family (Phacellophoridae), Zootaxa, 2741, 1, 10.11646/zootaxa.2741.1.1
Sukumaran, 2010, DendroPy: a Python library for phylogenetic computing, Bioinformatics, 26, 1569, 10.1093/bioinformatics/btq228
Thompson, 1997, The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Research, 25, 4876, 10.1093/nar/25.24.4876
Uchida, 1963, The Metamorphosis of the Scyphomedusa, Aurelia limbata (Brandt), Annotationes Zoologicae Japonenses, 36, 83
Vagelli, 2007, New observations on the asexual reproduction of Aurelia aurita (Cnidaria, Scyphozoa) with comments on its life cycle on the adaptative significance, Invertebrate Zoology, 4, 111, 10.15298/invertzool.04.2.01
Vaidya, 2011, SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information, Cladistics, 27, 171, 10.1111/j.1096-0031.2010.00329.x
Willcox, 2008, Population dynamics of natural colonies of Aurelia sp. scyphistomae in Tasmania, Australia, Marine Biology, 154, 661, 10.1007/s00227-008-0959-2
Wrobel, 1998, Pacific coast pelagic invertebrates: a guide to the common gelatinous animals, 108
Zwickl DJ 2006 Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion Auston, TX The University of Texas at Austin