The impact of mercury on the genome-wide transcription profile of zebrafish intestine

Journal of Hazardous Materials - Tập 389 - Trang 121842 - 2020
Qi-Lin Zhang1,2, Zhi-Xiang Dong1, Zhi-Wen Luo1, Man Zhang1, Xian-Yu Deng1,2, Jun Guo1,2, Feng Wang1,2, Lian-Bing Lin1,2
1Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
2Engineering Research Center for Replacement Technology of Feed Antibiotics of Yunnan College, Kunming 650500 China

Tài liệu tham khảo

Abbott, 2017, Early exposure to mercuric chloride or methylmercury alters zebrafish embryo (Danio rerio) development. Poult. Fish. Wildl, Sci ., 5, 1 Abril, 2012, Differential expression of the Gstp2 gene between the aboriginal species Mus spretus and the laboratory mouse Mus musculus. Mutat, Res ., 747, 53 Amara, 2014, Acute mercury toxicity modulates cytochrome P450, soluble epoxide hydrolase and their associated arachidonic acid metabolites in C57Bl/6 mouse heart. Toxicol, Lett ., 226, 53 Anders, 2010, Differential expression analysis for sequence count data, Genome Biol ., 11, R106, 10.1186/gb-2010-11-10-r106 Asea, 2000, HSP70 stimulates cytokine production through a CD14-dependant pathway, demonstrating its dual role as a chaperone and cytokine, Nat Med ., 6, 435, 10.1038/74697 Behringer, 2015, Differential gene expression reveals candidate genes for drought stress response in Abies alba (Pinaceae), PLoS ONE, 10, 10.1371/journal.pone.0124564 Benjamini, 1995, Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Statist, Soc ., 57, 289 Bourdineaud, 2013, Zebrafish: a model animal for analyzing the impact of environmental pollutants on muscle and brain mitochondrial bioenergetics, Int. J. Biochem. Cell Biol., 45, 16, 10.1016/j.biocel.2012.07.021 Bouzid, 2012, Association of the RAVER2 gene with increased susceptibility for ulcerative colitis. Hum, Immunol ., 73, 732 Brandl, 2017, Gut-liver axis at the frontier of host-microbial interactions, Am. J. Physiol., 312, 413 Cao, 2019, Identification of potential long noncoding RNA biomarker of mercury compounds in zebrafish embryos. Chem. Res, Toxicol ., 32, 878 Chen, 2019, Immunosuppression, oxidative stress, and glycometabolism disorder caused by cadmium in common carp (Cyprinus carpio L.): application of transcriptome analysis in risk assessment of environmental contaminant cadmium. J. Hazard, Mater ., 366, 386 Circu, 2010, Reactive oxygen species, cellular redox systems, and apoptosis. Free. Radic. Biol, Med ., 48, 749 Conesa, 2005, Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research, Bioinformatics, 21, 3674, 10.1093/bioinformatics/bti610 Delmond, 2019, Antioxidant imbalance and genotoxicity detected in fish induced by titanium dioxide nanoparticles (NpTiO2) and inorganic lead (PbII), Environ. Toxicol. Pharmacol., 67, 42, 10.1016/j.etap.2019.01.009 Dixit, 2010, Peroxisomes are signaling platforms for antiviral innate immunity, Cell, 141, 668, 10.1016/j.cell.2010.04.018 Feng, 2006, Gold mining related mercury contamination in Tongguan. Shaanxi Province, PR China. Appl, Geochem ., 21, 1955 Garner, 2012, Glutathione transferase pi class 2 (GSTp2) protects against the cardiac deformities caused by exposure to PAHs but not PCB-126 in zebrafish embryos, Comp, Biochem. Physio. C. Toxicol Pharmacol., 155, 573, 10.1016/j.cbpc.2012.01.007 Gray, 2000, Distribution, speciation, and transport of mercury in stream-sediment, stream-water, and fish collected near abandoned mercury mines in southwestern Alaska. USA, Sci. Total Environ, 260, 21, 10.1016/S0048-9697(00)00539-8 Guo, 2016, Analysis of digital gene expression profiling in hemocytes of white shrimp Litopenaeus vannamei under nitrite stress, Fish Shellfish Immunol ., 56, 1, 10.1016/j.fsi.2016.06.059 Guo, 2013, Trascriptome analysis of the Pacific white shrimp Litopenaeus vannamei exposed to nitrite by RNA-seq, Fish Shellfish Immunol., 35, 2008, 10.1016/j.fsi.2013.09.019 Handunnetthi, 2010, Regulation of major histocompatibility complex class II gene expression, genetic variation and disease, Genes Immun., 11, 99, 10.1038/gene.2009.83 Harding, 2003, An integrated stress response regulates amino acid metabolism and resistance to oxidative stress, Mol. Cell, 11, 619, 10.1016/S1097-2765(03)00105-9 Hartman, 2015, Subcellular localization of rat CYP2E1 impacts metabolic efficiency toward common substrates, Toxicology, 338, 47, 10.1016/j.tox.2015.10.001 Kim, 2013, Expression pattern of entire cytochrome P450 genes and response of defensomes in the benzo[a]pyrene-exposed monogonont rotifer Brachionus koreanus, Environ. Sci., 47, 13804, 10.1021/es403269v Kime, 1993, ‘Classical’ and ‘non-classical’ reproductive steroids in fish, Rev. Fish Biol, Fishe ., 3, 160 Langmead, 2011, 2012. Fast gapped-read alignment with Bowtie 2, Nat. Methods, 12, 323 Li, 2009, Mercury pollution in Asia: a review of the contaminated sites. J. Hard, Mater ., 168, 591 Li, 2009, SOAP2: an improved ultrafast tool for short read alignment, Bioinformatics, 25, 1966, 10.1093/bioinformatics/btp336 Lin, 2011, Application of zebrafish in environmental detection. Environ, Monitoring Early Warning, 3, 17 Livak, 2001, T. D, Schmittgen. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method, Methods, 25, 402, 10.1006/meth.2001.1262 Lraepiel, 1998, The chemical cycle and bioaccumulation of mercury. Annu. Rev, Ecol. Syst., 29, 543, 10.1146/annurev.ecolsys.29.1.543 Marcelo, 2013, Metals, oxidative stress and neurodegeneration: a focus on iron, manganese and mercury. Neurochem, Int ., 62, 575 Miller, 2008, Advances in the interpretation and prediction of CYP2E1 metabolism from a biochemical perspective. Expert Opin. Drug Metab, Toxicol ., 4, 1053 Moll, 2018, NoxO1 controls proliferation of colon epithelial cells. Front, Immunol .., 9, 973 Monteiro, 2010, Inorganic mercury exposure: toxicological effects, oxidative stress biomarkers and bioaccumulation in the tropical freshwater fish matrinxa, Brycon amazonicus (Spix and Agassiz, 1829), Ecotoxicology., 19, 105, 10.1007/s10646-009-0395-1 Nartley, 2004, a. K, Mercury pollution in selected small scale gold mining communities in southwestern Ghana. Mater, Geoenviron ., 51, 168 Nowarski, 2017, The stromal intervention: regulation of immunity and inflammation at the epithelial-mesenchymal barrier, Cell, 168, 362, 10.1016/j.cell.2016.11.040 Rivera-Hernández, 2019, Biodynamics of mercury in mussel tissues as a function of exposure pathway: natural vs microplastic routes, Sci. Total Environ, 674, 412, 10.1016/j.scitotenv.2019.04.175 DM, 1993, Effects of mercury on cytochrome P450 levels in mouse hepatic microsomes. Toxicol, Lett ., 28, 1409 Sandamalika, 2019, Immune and xenobiotic responses of glutathione S-Transferase theta (GST-θ) from marine invertebrate disk abalone (Haliotis discus discus): with molecular characterization and functional analysis, Fish Shellfish Immunol ., 91, 159, 10.1016/j.fsi.2019.04.004 Shekels, 2003, Characterization of the mouse Muc3 membrane bound intestinal mucin 5′ coding and promoter regions: regulation by inflammatory cytokines, Biochim. Biophys. Acta, 1627, 90, 10.1016/S0167-4781(03)00081-2 Silva, 2005, In vitro HgCl2 exposure of immune cells at different stages of maturation: effects on phenotype and function. Environ, Res ., 98, 341 Sonnack, 2018, Comparative analysis of the transcriptome responses of zebrafish embryos after exposure to low concentrations of cadmium, cobalt and copper, Comp. Biochem. Physiol., 25, 99 Sonnack, 2017, Concentration dependent transcriptome responses of zebrafish embryos after exposure to cadmium, cobalt and copper, Comp. Biochem. Physiol., 24, 29 Su, 2013, Effects of maternal cadmium exposure on female reproductive functions, gamete quality, and offspring development in zebrafish (Danio rerio). Arch. Environ. Con, Tox ., 65, 521 Tafalla, 2016, T cell immunity in the teleost digestive tract. Dev. Comp, Immunol ., 64, 167 Teng, 2018, Acute exposure of zebrafish embryo (Danio rerio) to flutolanil reveals its developmental mechanism of toxicity via disrupting the thyroid system and metabolism. Environ, Pollu ., 242, 1157, 10.1016/j.envpol.2018.07.092 Thompson, 2008, Cadmium: Toxic effects on the reproductive system and the embryo. Reprod, Toxicol ., 25, 304 Torraca, 2017, The inflammatory chemokine Cxcl18b exerts neutrophil-specific chemotaxis via the promiscuous chemokine receptor Cxcr2 in zebrafish. Dev. Comp, Immunol ., 67, 57 Vabulas, 2002, HSP70 as endogenous stimulus of the Toll/interleukin-1 receptor signal pathway. J. Biol, Chem ., 277, 15107 Veneman, 2017, Pathway analysis of systemic transcriptome responses to injected polystyrene particles in zebrafish larvae. Aquat, Toxicol ., 190, 112 Vomhofdekrey, 2012, The Nrf2-antioxidant response element pathway: a target for regulating energy metabolism, J. Nutr., 23, 1201 Wang, 2019, GSTO1 acts as a mediator in sodium fluoride-induced alterations of learning and memory related factors expressions in the hippocampus cell line, Chemosphere, 226, 201, 10.1016/j.chemosphere.2019.03.144 Wang, 2004, Sources and remediation for mercury contamination in aquatic systems-a literature review. Environ, Pollu ., 131, 323, 10.1016/j.envpol.2004.01.010 Wang, 2015, Physiologically based pharmacokinetic model for inorganic and methylmercury in a marine fish, Environ. Sci., 49, 10173, 10.1021/acs.est.5b02301 Wang, 2016, Transcriptome profiling analysis of rare minnow (Gobiocypris rarus) gills after waterborne cadmium exposure, Comp. Biochem. Physiol., 19, 120 Wei, 2016, Major histocompatibility complex classII DABalleles associated with intestinal parasite load in the vulnerable Chinese egret (Egretta eulophotes). Ecol, Evol ., 6, 4421 Wu, 2018, Sodium butyrate enhanced physical barrier function referring to Nrf2, JNK and MLCK signaling pathways in the intestine of young grass carp (Ctenopharyngodon idella), Fish Shellfish Immunol ., 73, 121, 10.1016/j.fsi.2017.12.009 Xie, 2011, KOBAS 2. 0: a web server for annotation and identification of enriched pathways and diseases, Nucleic Acids Res ., 39, W316, 10.1093/nar/gkr483 Xu, 2016, Genome-wide identification of suitable zebrafish Danio rerio reference genes for normalization of gene expression data by RT-qPCR. J, Fish Biol ., 88, 2095, 10.1111/jfb.12915 Yazdani, 2016, Short-term effect of bisphenol-a on oxidative stress responses in Atlantic salmon kidney cell line: a transcriptional study, Toxicol. Mech. Methods, 26, 295, 10.1080/15376516.2016.1177864 Zhang, 2016, Reproductive toxicity of inorganic mercury exposure in adult zebrafish: histological damage, oxidative stress, and alterations of sex hormone and gene expression in the hypothalamic-pituitary-gonadal axis. Aquat, Toxicol ., 177, 417 Zhang, 2016, Exposure to mercuric chloride induces developmental damage, oxidative stress and immunotoxicity in zebrafish embryos-larvae. Aquat, Toxicol ., 181, 76 Zhang, 2019, Genome-wide transcriptional response of microRNAs to the benzo(a)pyrene stress in amphioxus Branchiostoma belcheri, Chemosphere, 218, 205, 10.1016/j.chemosphere.2018.11.119 Zhang, 2017, Effect of cadmium on oxidative stress and immune function of common carp (Cyprinus carpio L.) by transcriptome analysis. Aquat, Toxicol ., 192, 171 Zhao, 2019, Di-(2-ethylhexyl) phthalate (DEHP)-induced hepatotoxicity in quail (Coturnix japonica) via suppression of the heat shock response, Chemosphere, 228, 685, 10.1016/j.chemosphere.2019.04.172 Zhen, 2014, Toxic effects of HgCl2 on activities of SOD, AchE and relative expression of SOD, AChE, CYP1A1 of zebrafish, Ecotoxicology, 23, 1842, 10.1007/s10646-014-1350-3