The female reproductive tract virome: understanding the dynamic role of viruses in gynecological health and disease
Tài liệu tham khảo
Monin, 2020, Immune responses in the human female reproductive tract, Immunology, 160, 106, 10.1111/imm.13136
Aldunate, 2015, Antimicrobial and immune modulatory effects of lactic acid and short chain fatty acids produced by vaginal microbiota associated with eubiosis and bacterial vaginosis, Front Physiol, 6, 10.3389/fphys.2015.00164
Boris, 1998, Adherence of human vaginal lactobacilli to vaginal epithelial cells and interaction with uropathogens, Infect Immun, 66, 1985, 10.1128/IAI.66.5.1985-1989.1998
Petrova, 2013, Vaginal microbiota and its role in HIV transmission and infection, FEMS Microbiol Rev, 37, 762, 10.1111/1574-6976.12029
White, 2011, The vaginal microbiome in health and disease, Trends Endocrinol Metab, 22, 389, 10.1016/j.tem.2011.06.001
Virgin, 2014, The virome in mammalian physiology and disease, Cell, 157, 142, 10.1016/j.cell.2014.02.032
Liang, 2021, The human virome: assembly, composition and host interactions, Nat Rev Microbiol, 19, 514, 10.1038/s41579-021-00536-5
Cadwell, 2015, The virome in host health and disease, Immunity, 42, 805, 10.1016/j.immuni.2015.05.003
Wylie, 2018, The vaginal eukaryotic DNA virome and preterm birth, Am J Obstet Gynecol, 219, 189.e1, 10.1016/j.ajog.2018.04.048
Wylie, 2014, Metagenomic analysis of double-stranded DNA viruses in healthy adults, BMC Biol, 12, 10.1186/s12915-014-0071-7
Siqueira, 2019, Composite analysis of the virome and bacteriome of HIV/HPV Co-infected women reveals proxies for immunodeficiency, Viruses, 11, 10.3390/v11050422
Gosmann, 2017, Lactobacillus-deficient cervicovaginal bacterial communities are associated with increased HIV acquisition in young south African women, Immunity, 46, 29, 10.1016/j.immuni.2016.12.013
Zhang, 2021, Comparison of viromes in vaginal secretion from pregnant women with and without vaginitis, Virol J, 18, 10.1186/s12985-020-01482-z
Jakobsen, 2020, Characterization of the vaginal DNA virome in health and dysbiosis, Viruses, 12, 10.3390/v12101143
Nagot, 2008, Longitudinal effect following initiation of highly active antiretroviral therapy on plasma and cervico-vaginal HIV-1 RNA among women in Burkina Faso, Sex Transm Infect, 84, 167, 10.1136/sti.2007.027987
Morelli, 2020, Zika virus infection in the genital tract of non-pregnant females: a systematic review, Rev Inst Med Trop Sao Paulo, 62, 10.1590/s1678-9946202062016
Parmar, 2017, Intriguing interaction of bacteriophage-host association: an understanding in the era of omics, Front Microbiol, 8, 10.3389/fmicb.2017.00559
Van Belleghem, 2018, Interactions between bacteriophage, bacteria, and the mammalian immune system, Viruses, 11, 10.3390/v11010010
Kiliç, 2001, Comparative study of vaginal Lactobacillus phages isolated from women in the United States and Turkey: prevalence, morphology, host range, and DNA homology, Clin Diagn Lab Immunol, 8, 31, 10.1128/CDLI.8.1.31-39.2001
da Costa, 2021, Identification of bacteriophages in the vagina of pregnant women: a descriptive study, BJOG, 128, 976, 10.1111/1471-0528.16528
Madere, 2021, Transkingdom analysis of the female reproductive tract reveals bacteriophages form communities, bioRxiv
Gogokhia, 2019, Expansion of bacteriophages is linked to aggravated intestinal inflammation and colitis, Cell Host Microbe, 25, 285, 10.1016/j.chom.2019.01.008
Wilks, 2013, Dual role of commensal bacteria in viral infections, Immunol Rev, 255, 222, 10.1111/imr.12097
Nardis, 2013, Vaginal microbiota and viral sexually transmitted diseases, Ann Ig, 25, 443
Macklaim, 2013, Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis, Microbiome, 1, 10.1186/2049-2618-1-12
Schellenberg, 2012, The microbiological context of hiv resistance: vaginal microbiota and mucosal inflammation at the viral point of entry, Int J Inflam, 2012
Shannon, 2017, Distinct effects of the cervicovaginal microbiota and herpes simplex type 2 infection on female genital tract immunology, J Infect Dis, 215, 1366, 10.1093/infdis/jix088
Torcia, 2019, Interplay among vaginal microbiome, immune response and sexually transmitted viral infections, Int J Mol Sci, 20, 10.3390/ijms20020266
Borgdorff, 2014, Lactobacillus-dominated cervicovaginal microbiota associated with reduced HIV/STI prevalence and genital HIV viral load in African women, ISME J, 8, 1781, 10.1038/ismej.2014.26
McClelland, 2018, Evaluation of the association between the concentrations of key vaginal bacteria and the increased risk of HIV acquisition in African women from five cohorts: a nested case-control study, Lancet Infect Dis, 18, 554, 10.1016/S1473-3099(18)30058-6
Guerin, 2020, Shining light on human gut bacteriophages, Front Cell Infect Microbiol, 10, 10.3389/fcimb.2020.00481
Khan Mirzaei, 2021, Challenges of studying the human virome - relevant emerging technologies, Trends Microbiol, 29, 171, 10.1016/j.tim.2020.05.021
Howard-Varona, 2017, Lysogeny in nature: mechanisms, impact and ecology of temperate phages, ISME J, 11, 1511, 10.1038/ismej.2017.16
Lawrence, 2019, Phages and human health: more than idle hitchhikers, Viruses, 11, 10.3390/v11070587
Pavlova, 1997, Phage infection in vaginal lactobacilli: an in vitro study, Infect Dis Obstet Gynecol, 5, 36
Malki, 2016, Genomes of Gardnerella strains reveal an abundance of prophages within the bladder microbiome, PLoS One, 11, 10.1371/journal.pone.0166757
Damelin, 2011, Identification of predominant culturable vaginal Lactobacillus species and associated bacteriophages from women with and without vaginal discharge syndrome in South Africa, J Med Microbiol, 60, 180, 10.1099/jmm.0.024463-0
Martin, 2009, Bacteriophage induction versus vaginal homeostasis: role of H(2)O(2) in the selection of Lactobacillus defective prophages, Int Microbiol, 12, 131
Baugher, 2014, Spontaneously induced prophages in Lactobacillus gasseri contribute to horizontal gene transfer, Appl Environ Microbiol, 80, 3508, 10.1128/AEM.04092-13
Javed, 2020, Comparative analysis of Bacterial Vaginosis microbiota among pregnant and non-pregnant females and isolation of phages against Enterococcus faecalis, Enterococcus faecium, and Shigella flexneri strains, Microb Pathog, 149, 10.1016/j.micpath.2020.104588
Miller-Ensminger, 2018, Bacteriophages of the urinary microbiome, J Bacteriol, 200, 10.1128/JB.00738-17
Prevention CfDCa, 2019, vol 30
Mwatelah, 2019, Mechanisms of sexually transmitted infection-induced inflammation in women: implications for HIV risk, J Int AIDS Soc, 22
Cohen, 2004, HIV and sexually transmitted diseases: lethal synergy, Top HIV Med, 12, 104
Mayer, 2011, Interactions of HIV, other sexually transmitted diseases, and genital tract inflammation facilitating local pathogen transmission and acquisition, Am J Reprod Immunol, 65, 308, 10.1111/j.1600-0897.2010.00942.x
Reynolds, 2005, Developments in STD/HIV interactions: the intertwining epidemics of HIV and HSV-2, Infect Dis Clin North Am, 19, 415, 10.1016/j.idc.2005.04.005
Strick, 2006, Management of herpes simplex virus type 2 infection in HIV type 1-infected persons, Clin Infect Dis, 43, 347, 10.1086/505496
Maiman, 1997, Cervical cancer as an AIDS-defining illness, Obstet Gynecol, 89, 76, 10.1016/S0029-7844(96)00378-X
Maartens, 2014, HIV infection: epidemiology, pathogenesis, treatment, and prevention, Lancet, 384, 258, 10.1016/S0140-6736(14)60164-1
Gao, 2013, Comparison of the vaginal microbiota diversity of women with and without human papillomavirus infection: a cross-sectional study, BMC Infect Dis, 13, 10.1186/1471-2334-13-271
Mirmonsef, 2012, The role of bacterial vaginosis and trichomonas in HIV transmission across the female genital tract, Curr HIV Res, 10, 202, 10.2174/157016212800618165
Moi, 1990, Prevalence of bacterial vaginosis and its association with genital infections, inflammation, and contraceptive methods in women attending sexually transmitted disease and primary health clinics, Int J STD AIDS, 1, 86, 10.1177/095646249000100203
Reimers, 2016, The cervicovaginal microbiota and its associations with human papillomavirus detection in HIV-infected and HIV-uninfected women, J Infect Dis, 214, 1361, 10.1093/infdis/jiw374
Kimberlin, 2001, Natural history of neonatal herpes simplex virus infections in the acyclovir era, Pediatrics, 108, 223, 10.1542/peds.108.2.223
Aral, 2006, Social and behavioral determinants of sexually transmitted disease: scientific and technologic advances, demography, and the global political economy, Sex Transm Dis, 33, 698, 10.1097/01.olq.0000250476.76031.e8
Cohen, 2019, Cervical cancer, Lancet, 393, 169, 10.1016/S0140-6736(18)32470-X
Ngugi, 2011, Effects of bacterial vaginosis-associated bacteria and sexual intercourse on vaginal colonization with the probiotic Lactobacillus crispatus CTV-05, Sex Transm Dis, 38, 1020, 10.1097/OLQ.0b013e3182267ac4
Ceccarani, 2019, Diversity of vaginal microbiome and metabolome during genital infections, Sci Rep, 9, 10.1038/s41598-019-50410-x
Joesoef, 2005, Bacterial vaginosis, Clin Evid, 13, 1968
Bilardi, 2013, The burden of bacterial vaginosis: women’s experience of the physical, emotional, sexual and social impact of living with recurrent bacterial vaginosis, PLoS One, 8, 10.1371/journal.pone.0074378
Turovskiy, 2011, The aetiology of bacterial vaginosis, J Appl Microbiol, 110, 1105, 10.1111/j.1365-2672.2011.04977.x
Blackwell, 1999, Vaginal bacterial phaginosis?, Sex Transm Infect, 75, 352, 10.1136/sti.75.5.352
Rho, 2012, Diverse CRISPRs evolving in human microbiomes, PLoS Genet, 8, 10.1371/journal.pgen.1002441
Zhang, 2013, CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes, Genome Biol, 14, 10.1186/gb-2013-14-4-r40
Javed, 2019, Bacterial vaginosis: an insight into the prevalence, alternative treatments regimen and it’s associated resistance patterns, Microb Pathog, 127, 21, 10.1016/j.micpath.2018.11.046
Deng, 2018, Metatranscriptome analysis of the vaginal microbiota reveals potential mechanisms for protection against metronidazole in bacterial vaginosis, mSphere, 3, 10.1128/mSphereDirect.00262-18
Racicot, 2013, Viral infection of the pregnant cervix predisposes to ascending bacterial infection, J Immunol, 191, 934, 10.4049/jimmunol.1300661
Cardenas, 2010, Viral infection of the placenta leads to fetal inflammation and sensitization to bacterial products predisposing to preterm labor, J Immunol, 185, 1248, 10.4049/jimmunol.1000289
Stout, 2017, Early pregnancy vaginal microbiome trends and preterm birth, Am J Obstet Gynecol, 217, 356.e1, 10.1016/j.ajog.2017.05.030
Callahan, 2017, Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women, Proc Natl Acad Sci U S A, 114, 9966, 10.1073/pnas.1705899114
DiGiulio, 2015, Temporal and spatial variation of the human microbiota during pregnancy, Proc Natl Acad Sci U S A, 112, 11060, 10.1073/pnas.1502875112
Pereira-Marques, 2019, Impact of host DNA and sequencing depth on the taxonomic resolution of whole metagenome sequencing for microbiome analysis, Front Microbiol, 10, 10.3389/fmicb.2019.01277
Wang, 2020, Human papillomavirus vaccine against cervical cancer: opportunity and challenge, Cancer Lett, 471, 88, 10.1016/j.canlet.2019.11.039
Eskew, 2020, Association of the eukaryotic vaginal virome with prophylactic antibiotic exposure and reproductive outcomes in a subfertile population undergoing in vitro fertilisation: a prospective exploratory study, BJOG, 127, 208, 10.1111/1471-0528.15951
Li, 2018, The metagenome of the female upper reproductive tract, Gigascience, 7, 10.1093/gigascience/giy107
Ameur, 2014, Comprehensive profiling of the vaginal microbiome in HIV positive women using massive parallel semiconductor sequencing, Sci Rep, 4, 10.1038/srep04398