The female reproductive tract virome: understanding the dynamic role of viruses in gynecological health and disease

Current Opinion in Virology - Tập 52 - Trang 15-23 - 2022
Ferralita S Madere1, Cynthia L Monaco1,2
1Department of Microbiology and Immunology, University of Rochester Medical Center, 601 Elmwood Avenue, Rochester, NY, USA
2Department of Internal Medicine, Division of Infectious Diseases, University of Rochester Medical Center, 601 Elmwood Avenue, Rochester, NY, USA

Tài liệu tham khảo

Monin, 2020, Immune responses in the human female reproductive tract, Immunology, 160, 106, 10.1111/imm.13136 Aldunate, 2015, Antimicrobial and immune modulatory effects of lactic acid and short chain fatty acids produced by vaginal microbiota associated with eubiosis and bacterial vaginosis, Front Physiol, 6, 10.3389/fphys.2015.00164 Boris, 1998, Adherence of human vaginal lactobacilli to vaginal epithelial cells and interaction with uropathogens, Infect Immun, 66, 1985, 10.1128/IAI.66.5.1985-1989.1998 Petrova, 2013, Vaginal microbiota and its role in HIV transmission and infection, FEMS Microbiol Rev, 37, 762, 10.1111/1574-6976.12029 White, 2011, The vaginal microbiome in health and disease, Trends Endocrinol Metab, 22, 389, 10.1016/j.tem.2011.06.001 Virgin, 2014, The virome in mammalian physiology and disease, Cell, 157, 142, 10.1016/j.cell.2014.02.032 Liang, 2021, The human virome: assembly, composition and host interactions, Nat Rev Microbiol, 19, 514, 10.1038/s41579-021-00536-5 Cadwell, 2015, The virome in host health and disease, Immunity, 42, 805, 10.1016/j.immuni.2015.05.003 Wylie, 2018, The vaginal eukaryotic DNA virome and preterm birth, Am J Obstet Gynecol, 219, 189.e1, 10.1016/j.ajog.2018.04.048 Wylie, 2014, Metagenomic analysis of double-stranded DNA viruses in healthy adults, BMC Biol, 12, 10.1186/s12915-014-0071-7 Siqueira, 2019, Composite analysis of the virome and bacteriome of HIV/HPV Co-infected women reveals proxies for immunodeficiency, Viruses, 11, 10.3390/v11050422 Gosmann, 2017, Lactobacillus-deficient cervicovaginal bacterial communities are associated with increased HIV acquisition in young south African women, Immunity, 46, 29, 10.1016/j.immuni.2016.12.013 Zhang, 2021, Comparison of viromes in vaginal secretion from pregnant women with and without vaginitis, Virol J, 18, 10.1186/s12985-020-01482-z Jakobsen, 2020, Characterization of the vaginal DNA virome in health and dysbiosis, Viruses, 12, 10.3390/v12101143 Nagot, 2008, Longitudinal effect following initiation of highly active antiretroviral therapy on plasma and cervico-vaginal HIV-1 RNA among women in Burkina Faso, Sex Transm Infect, 84, 167, 10.1136/sti.2007.027987 Morelli, 2020, Zika virus infection in the genital tract of non-pregnant females: a systematic review, Rev Inst Med Trop Sao Paulo, 62, 10.1590/s1678-9946202062016 Parmar, 2017, Intriguing interaction of bacteriophage-host association: an understanding in the era of omics, Front Microbiol, 8, 10.3389/fmicb.2017.00559 Van Belleghem, 2018, Interactions between bacteriophage, bacteria, and the mammalian immune system, Viruses, 11, 10.3390/v11010010 Kiliç, 2001, Comparative study of vaginal Lactobacillus phages isolated from women in the United States and Turkey: prevalence, morphology, host range, and DNA homology, Clin Diagn Lab Immunol, 8, 31, 10.1128/CDLI.8.1.31-39.2001 da Costa, 2021, Identification of bacteriophages in the vagina of pregnant women: a descriptive study, BJOG, 128, 976, 10.1111/1471-0528.16528 Madere, 2021, Transkingdom analysis of the female reproductive tract reveals bacteriophages form communities, bioRxiv Gogokhia, 2019, Expansion of bacteriophages is linked to aggravated intestinal inflammation and colitis, Cell Host Microbe, 25, 285, 10.1016/j.chom.2019.01.008 Wilks, 2013, Dual role of commensal bacteria in viral infections, Immunol Rev, 255, 222, 10.1111/imr.12097 Nardis, 2013, Vaginal microbiota and viral sexually transmitted diseases, Ann Ig, 25, 443 Macklaim, 2013, Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis, Microbiome, 1, 10.1186/2049-2618-1-12 Schellenberg, 2012, The microbiological context of hiv resistance: vaginal microbiota and mucosal inflammation at the viral point of entry, Int J Inflam, 2012 Shannon, 2017, Distinct effects of the cervicovaginal microbiota and herpes simplex type 2 infection on female genital tract immunology, J Infect Dis, 215, 1366, 10.1093/infdis/jix088 Torcia, 2019, Interplay among vaginal microbiome, immune response and sexually transmitted viral infections, Int J Mol Sci, 20, 10.3390/ijms20020266 Borgdorff, 2014, Lactobacillus-dominated cervicovaginal microbiota associated with reduced HIV/STI prevalence and genital HIV viral load in African women, ISME J, 8, 1781, 10.1038/ismej.2014.26 McClelland, 2018, Evaluation of the association between the concentrations of key vaginal bacteria and the increased risk of HIV acquisition in African women from five cohorts: a nested case-control study, Lancet Infect Dis, 18, 554, 10.1016/S1473-3099(18)30058-6 Guerin, 2020, Shining light on human gut bacteriophages, Front Cell Infect Microbiol, 10, 10.3389/fcimb.2020.00481 Khan Mirzaei, 2021, Challenges of studying the human virome - relevant emerging technologies, Trends Microbiol, 29, 171, 10.1016/j.tim.2020.05.021 Howard-Varona, 2017, Lysogeny in nature: mechanisms, impact and ecology of temperate phages, ISME J, 11, 1511, 10.1038/ismej.2017.16 Lawrence, 2019, Phages and human health: more than idle hitchhikers, Viruses, 11, 10.3390/v11070587 Pavlova, 1997, Phage infection in vaginal lactobacilli: an in vitro study, Infect Dis Obstet Gynecol, 5, 36 Malki, 2016, Genomes of Gardnerella strains reveal an abundance of prophages within the bladder microbiome, PLoS One, 11, 10.1371/journal.pone.0166757 Damelin, 2011, Identification of predominant culturable vaginal Lactobacillus species and associated bacteriophages from women with and without vaginal discharge syndrome in South Africa, J Med Microbiol, 60, 180, 10.1099/jmm.0.024463-0 Martin, 2009, Bacteriophage induction versus vaginal homeostasis: role of H(2)O(2) in the selection of Lactobacillus defective prophages, Int Microbiol, 12, 131 Baugher, 2014, Spontaneously induced prophages in Lactobacillus gasseri contribute to horizontal gene transfer, Appl Environ Microbiol, 80, 3508, 10.1128/AEM.04092-13 Javed, 2020, Comparative analysis of Bacterial Vaginosis microbiota among pregnant and non-pregnant females and isolation of phages against Enterococcus faecalis, Enterococcus faecium, and Shigella flexneri strains, Microb Pathog, 149, 10.1016/j.micpath.2020.104588 Miller-Ensminger, 2018, Bacteriophages of the urinary microbiome, J Bacteriol, 200, 10.1128/JB.00738-17 Prevention CfDCa, 2019, vol 30 Mwatelah, 2019, Mechanisms of sexually transmitted infection-induced inflammation in women: implications for HIV risk, J Int AIDS Soc, 22 Cohen, 2004, HIV and sexually transmitted diseases: lethal synergy, Top HIV Med, 12, 104 Mayer, 2011, Interactions of HIV, other sexually transmitted diseases, and genital tract inflammation facilitating local pathogen transmission and acquisition, Am J Reprod Immunol, 65, 308, 10.1111/j.1600-0897.2010.00942.x Reynolds, 2005, Developments in STD/HIV interactions: the intertwining epidemics of HIV and HSV-2, Infect Dis Clin North Am, 19, 415, 10.1016/j.idc.2005.04.005 Strick, 2006, Management of herpes simplex virus type 2 infection in HIV type 1-infected persons, Clin Infect Dis, 43, 347, 10.1086/505496 Maiman, 1997, Cervical cancer as an AIDS-defining illness, Obstet Gynecol, 89, 76, 10.1016/S0029-7844(96)00378-X Maartens, 2014, HIV infection: epidemiology, pathogenesis, treatment, and prevention, Lancet, 384, 258, 10.1016/S0140-6736(14)60164-1 Gao, 2013, Comparison of the vaginal microbiota diversity of women with and without human papillomavirus infection: a cross-sectional study, BMC Infect Dis, 13, 10.1186/1471-2334-13-271 Mirmonsef, 2012, The role of bacterial vaginosis and trichomonas in HIV transmission across the female genital tract, Curr HIV Res, 10, 202, 10.2174/157016212800618165 Moi, 1990, Prevalence of bacterial vaginosis and its association with genital infections, inflammation, and contraceptive methods in women attending sexually transmitted disease and primary health clinics, Int J STD AIDS, 1, 86, 10.1177/095646249000100203 Reimers, 2016, The cervicovaginal microbiota and its associations with human papillomavirus detection in HIV-infected and HIV-uninfected women, J Infect Dis, 214, 1361, 10.1093/infdis/jiw374 Kimberlin, 2001, Natural history of neonatal herpes simplex virus infections in the acyclovir era, Pediatrics, 108, 223, 10.1542/peds.108.2.223 Aral, 2006, Social and behavioral determinants of sexually transmitted disease: scientific and technologic advances, demography, and the global political economy, Sex Transm Dis, 33, 698, 10.1097/01.olq.0000250476.76031.e8 Cohen, 2019, Cervical cancer, Lancet, 393, 169, 10.1016/S0140-6736(18)32470-X Ngugi, 2011, Effects of bacterial vaginosis-associated bacteria and sexual intercourse on vaginal colonization with the probiotic Lactobacillus crispatus CTV-05, Sex Transm Dis, 38, 1020, 10.1097/OLQ.0b013e3182267ac4 Ceccarani, 2019, Diversity of vaginal microbiome and metabolome during genital infections, Sci Rep, 9, 10.1038/s41598-019-50410-x Joesoef, 2005, Bacterial vaginosis, Clin Evid, 13, 1968 Bilardi, 2013, The burden of bacterial vaginosis: women’s experience of the physical, emotional, sexual and social impact of living with recurrent bacterial vaginosis, PLoS One, 8, 10.1371/journal.pone.0074378 Turovskiy, 2011, The aetiology of bacterial vaginosis, J Appl Microbiol, 110, 1105, 10.1111/j.1365-2672.2011.04977.x Blackwell, 1999, Vaginal bacterial phaginosis?, Sex Transm Infect, 75, 352, 10.1136/sti.75.5.352 Rho, 2012, Diverse CRISPRs evolving in human microbiomes, PLoS Genet, 8, 10.1371/journal.pgen.1002441 Zhang, 2013, CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes, Genome Biol, 14, 10.1186/gb-2013-14-4-r40 Javed, 2019, Bacterial vaginosis: an insight into the prevalence, alternative treatments regimen and it’s associated resistance patterns, Microb Pathog, 127, 21, 10.1016/j.micpath.2018.11.046 Deng, 2018, Metatranscriptome analysis of the vaginal microbiota reveals potential mechanisms for protection against metronidazole in bacterial vaginosis, mSphere, 3, 10.1128/mSphereDirect.00262-18 Racicot, 2013, Viral infection of the pregnant cervix predisposes to ascending bacterial infection, J Immunol, 191, 934, 10.4049/jimmunol.1300661 Cardenas, 2010, Viral infection of the placenta leads to fetal inflammation and sensitization to bacterial products predisposing to preterm labor, J Immunol, 185, 1248, 10.4049/jimmunol.1000289 Stout, 2017, Early pregnancy vaginal microbiome trends and preterm birth, Am J Obstet Gynecol, 217, 356.e1, 10.1016/j.ajog.2017.05.030 Callahan, 2017, Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women, Proc Natl Acad Sci U S A, 114, 9966, 10.1073/pnas.1705899114 DiGiulio, 2015, Temporal and spatial variation of the human microbiota during pregnancy, Proc Natl Acad Sci U S A, 112, 11060, 10.1073/pnas.1502875112 Pereira-Marques, 2019, Impact of host DNA and sequencing depth on the taxonomic resolution of whole metagenome sequencing for microbiome analysis, Front Microbiol, 10, 10.3389/fmicb.2019.01277 Wang, 2020, Human papillomavirus vaccine against cervical cancer: opportunity and challenge, Cancer Lett, 471, 88, 10.1016/j.canlet.2019.11.039 Eskew, 2020, Association of the eukaryotic vaginal virome with prophylactic antibiotic exposure and reproductive outcomes in a subfertile population undergoing in vitro fertilisation: a prospective exploratory study, BJOG, 127, 208, 10.1111/1471-0528.15951 Li, 2018, The metagenome of the female upper reproductive tract, Gigascience, 7, 10.1093/gigascience/giy107 Ameur, 2014, Comprehensive profiling of the vaginal microbiome in HIV positive women using massive parallel semiconductor sequencing, Sci Rep, 4, 10.1038/srep04398