The Structural Basis for the Action of the Antibiotics Tetracycline, Pactamycin, and Hygromycin B on the 30S Ribosomal Subunit
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Allen, 1989, Mutations in ribosomal proteins S4 and S12 influence the higher order structure of 16 S ribosomal RNA, J. Mol. Biol., 208, 457, 10.1016/0022-2836(89)90509-3
Ban, 2000, The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution, Science, 289, 905, 10.1126/science.289.5481.905
Bhuyan, B.K., Dietz, A., and Smith, C.G. (1961). Pactamycin, a new antitumor antibiotic. I. Discovery and biological properties. Antimicrob. Agents Chemother., 184–190.
Brown, 1993, Two regions of the Escherichia coli 16S ribosomal RNA are important for decoding stop signals in polypeptide chain termination, Nucleic Acids Res., 21, 2109, 10.1093/nar/21.9.2109
Brunger, 1998, Crystallography & NMR system, Acta Crystallogr. D Biol. Crystallogr., 54, 905, 10.1107/S0907444998003254
Buck, 1990, Single protein omission reconstitution studies of tetracycline binding to the 30S subunit of Escherichia coli ribosomes, Biochemistry, 29, 5374, 10.1021/bi00474a024
Burdett, 1996, Tet(M)-promoted release of tetracycline from ribosomes is GTP dependent, J. Bacteriol., 178, 3246, 10.1128/jb.178.11.3246-3251.1996
Cabanas, 1978, Dual interference of hygromycin B with ribosomal translocation and with aminoacyl-tRNA recognition, Eur. J. Biochem., 87, 21, 10.1111/j.1432-1033.1978.tb12347.x
Cabanas, 1978, Inhibition of ribosomal translocation by aminoglycoside antibiotics, Biochem. Biophys. Res. Commun., 83, 991, 10.1016/0006-291X(78)91493-6
Carter, 2000, Functional insights from the structure of the 30S ribsomal subunit and its interactions with antibiotics, Nature, 407, 340, 10.1038/35030019
Cate, 1999, X-ray crystal structures of 70S ribosome functional complexes, Science, 285, 2095, 10.1126/science.285.5436.2095
Chopra, 1992, Tetracyclines, molecular and clinical aspects, J. Antimicrob. Chemother., 29, 245, 10.1093/jac/29.3.245
Cohen, 1969, Inhibition by pactamycin of the initiation of protein synthesis. Effect on the 30S ribosomal subunit, Biochemistry, 8, 1327, 10.1021/bi00832a005
Cohen, 1969, Inhibition by pactamycin of the initiation of protein synthesis. Binding of N-acetylphenylalanyl transfer ribonucleic acid and polyuridylic acid to ribosomes, Biochemistry, 8, 1312, 10.1021/bi00832a004
Dahlberg, 1973, Colicin E3 induced cleavage of 16S ribosomal ribonucleic acid; blocking effects of certain antibiotics, Biochemistry, 12, 948, 10.1021/bi00729a025
De Stasio, 1990, Effects of mutagenesis of a conserved base-paired site near the decoding region of Escherichia coli 16 S ribosomal RNA, J. Mol. Biol., 212, 127, 10.1016/0022-2836(90)90309-A
Egebjerg, 1991, Binding sites of the antibiotics pactamycin and celesticetin on ribosomal RNAs, Biochimie, 73, 1145, 10.1016/0300-9084(91)90158-W
Epe, 1987, Competition between tetracycline and tRNA at both P and A sites of the ribosome of Escherichia coli, FEBS Lett., 213, 443, 10.1016/0014-5793(87)81539-9
Eustice, 1984, Fidelity of the eukaryotic codon-anticodon interaction, Biochemistry, 23, 1462, 10.1021/bi00302a019
Eustice, 1984, Mechanisms of action of aminoglycoside antibiotics in eucaryotic protein synthesis, Antimicrob. Agents Chemother., 26, 53, 10.1128/AAC.26.1.53
Fourmy, 1996, Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic, Science, 274, 1367, 10.1126/science.274.5291.1367
Frank, 2000, A ratchet-like inter-subunit reorganization of the ribosome during translocation, Nature, 406, 318, 10.1038/35018597
Gale, 1981
2000
Geigenmuller, 1986, Tetracycline can inhibit tRNA binding to the ribosomal P site as well as to the A site, Eur. J. Biochem., 161, 723, 10.1111/j.1432-1033.1986.tb10499.x
Gonzales, 1978, Studies on the mode of action of hygromycin B, an inhibitor of translocation in eukaryotes, Biochim. Biophys. Acta, 521, 459, 10.1016/0005-2787(78)90287-3
Gordon, 1969, Hydrolysis of guanosine 5′-triphosphate associated wh binding of aminoacyl transfer ribonucleic acid to ribosomes, J. Biol. Chem., 244, 5680, 10.1016/S0021-9258(18)63613-0
Gutell, 1996, Comparative sequence analysis and the structure of 16S and 23S rRNA
Hinrichs, 1994, Structure of the Tet repressor-tetracycline complex and regulation of antibiotic resistance, Science, 264, 418, 10.1126/science.8153629
1985
Kappen, 1976, Analysis of the two steps in polypeptide chain initiation inhibited by pactamycin, Biochemistry, 15, 811, 10.1021/bi00649a013
Kolesnikov, 1996, Tetracyclines induce changes in accessibility of ribosomal proteins to proteases, Biochimie, 78, 868, 10.1016/S0300-9084(97)84340-4
Lata, 1996, Three-dimensional reconstruction of the Escherichia coli 30 S ribosomal subunit in ice, J. Mol. Biol., 262, 43, 10.1006/jmbi.1996.0497
Lodmell, 1997, A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA, Science, 277, 1262, 10.1126/science.277.5330.1262
Manavathu, 1990, Molecular studies on the mechanism of tetracycline resistance mediated by Tet(O), Antimicrob. Agents Chemother., 34, 71, 10.1128/AAC.34.1.71
Mankin, 1997, Pactamycin resistance mutations in functional sites of 16 S rRNA, J. Mol. Biol., 274, 8, 10.1006/jmbi.1997.1387
Mann, 1958, The isolation of a second antibiotic from Streptomyces hygroscopicus, J. Am. Chem. Soc., 80, 2714, 10.1021/ja01544a032
Maxwell, 1967, Partial removal of bound transfer RNA from polysomes engaged in protein synthesis in vitro after addition of tetracycline, Biochim. Biophys. Acta, 138, 337, 10.1016/0005-2787(67)90494-7
Moazed, 1987, Interaction of antibiotics with functional sites in 16S ribosomal RNA, Nature, 327, 389, 10.1038/327389a0
Moazed, 1995, Specific protection of 16 S rRNA by translational initiation factors, J. Mol. Biol., 248, 207, 10.1016/S0022-2836(95)80042-5
Mueller, 1997, A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. I. Fitting the RNA to a 3D electron microscopic map at 20 Å, J. Mol. Biol., 271, 524, 10.1006/jmbi.1997.1210
Noah, 1999, Effects of tetracycline and spectinomycin on the tertiary structure of ribosomal RNA in the Escherichia coli 30 S ribosomal subunit, J. Biol. Chem., 274, 16576, 10.1074/jbc.274.23.16576
Oehler, 1997, Interaction of tetracycline with RNA, Nucleic Acids Res., 25, 1219, 10.1093/nar/25.6.1219
Otwinowski, 1997, Processing of x-ray diffraction data collected in oscillation mode, 10.1016/S0076-6879(97)76066-X
Pestka, 1974, The use of inhibitors in studies on protein synthesis, Methods Enzymol., 30, 261, 10.1016/0076-6879(74)30030-4
Read, 1986, Improved Fourier coefficients for maps using phases from partial structures with errors, Acta Crystallogr. A, 42, 140, 10.1107/S0108767386099622
Ross, 1998, 16S rRNA mutation associated with tetracycline resistance in a gram-positive bacterium, Antimicrob. Agents Chemother., 42, 1702, 10.1128/AAC.42.7.1702
Salyers, 1990, New perspectives in tetracycline resistance, Mol. Microbiol., 4, 151, 10.1111/j.1365-2958.1990.tb02025.x
Schluenzen, 2000, Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution, Cell, 102, 615, 10.1016/S0092-8674(00)00084-2
Semenkov, 1982, Kinetic aspects of tetracycline action on the acceptor (A) site of Escherichia coli ribosomes, FEBS Lett., 144, 125, 10.1016/0014-5793(82)80584-X
Spangler, 1985, The nucleotide sequence of the 17S ribosomal RNA gene of Tetrahymena thermophila and the identification of point mutations resulting in resistance to the antibiotics paromomycin and hygromycin, J. Biol. Chem., 260, 6334, 10.1016/S0021-9258(18)88976-1
Stark, 1997, Arrangement of tRNAs in pre- and posttranslocational ribosomes revealed by electron cryomicroscopy, Cell, 88, 19, 10.1016/S0092-8674(00)81854-1
Stezowski, 1976, Chemical-structural properties of tetracycline derivatives. 1. Molecular structure and conformation of the free base derivatives, J. Am. Chem. Soc., 98, 6012, 10.1021/ja00435a039
Tai, 1973, Actions of aurintricarboxylate, kasugamycin, and pactamycin on Escherichia coli polysomes, Biochemistry, 12, 616, 10.1021/bi00728a008
Taylor, 1996, Tetracycline resistance mediated by ribosomal protection, Antimicrob. Agents Chemother., 40, 1, 10.1128/AAC.40.1.1
White, 1971, Role of magnesium in the binding of tetracycline to Escherichia coli ribosomes, J. Mol. Biol., 58, 397, 10.1016/0022-2836(71)90255-5
Woodcock, 1991, Interaction of antibiotics with A- and P-site-specific bases in 16S ribosomal RNA, EMBO J., 10, 3099, 10.1002/j.1460-2075.1991.tb07863.x
Yoshizawa, 1998, Structural origins of gentamicin antibiotic action, EMBO J., 17, 6437, 10.1093/emboj/17.22.6437