The Relationship of Nitrate Reducing Bacteria on the Basis of narH Gene Sequences and Comparison of narH and 16S rDNA Based Phylogeny

Systematic and Applied Microbiology - Tập 23 - Trang 47-57 - 2000
Ralf Petri1, Johannes F. Imhoff1
1Institut für Meereskunde, Kiel, Germany

Tài liệu tham khảo

Adachi, 1996

Berks, 1995, The napEDABC gene cluster encoding the periplasmic nitrate reductase system of Thiosphaera pantotropha, Biochem. J., 309, 983, 10.1042/bj3090983

Betlach, 1982, Evolution of bacterial denitrification and denitrifier diversity, Antonie van Leeuwenhoek, 48, 585, 10.1007/BF00399543

Felsenstein, 1989, Phylip - phylogenetic interference package (version 3.2), Cladistics, 5, 164

Gamble, 1977, Numerically dominant denitrifying bacteria from world soils, Appl. Environm. Microbiol., 33, 926, 10.1128/AEM.33.4.926-939.1977

Hillis, 1996, Inferring complex phylogenies, Nature, 383, 130, 10.1038/383130a0

Jukes, 1969, Evolution of protein molecules, 21

Knowles, 1982, Denitrification, Microbiol. Rev., 46, 43, 10.1128/MMBR.46.1.43-70.1982

Kolesnikow, 1992, Regulation of narK gene expresison in Escherichia coli in response to anaerobiosis, nitrite, iron, and molybdenum, J. Bacteriol., 174, 7104, 10.1128/jb.174.22.7104-7111.1992

McPherson, 1984, Respiratory nitrate reductase of Escherichia coli, FEBS letters, 177, 260, 10.1016/0014-5793(84)81295-8

Pearson, 1990, Rapid and sensitive sequence comparison with FAST and FASTA, Methods Enzymol., 183, 63, 10.1016/0076-6879(90)83007-V

Pfennig, 1974, Rhodopseudomonas globiformis, sp. N., a new species of the Rhodospirillaceae, Arch. Microbiol., 100, 197, 10.1007/BF00446317

Römermann, 1985, Denitrification by Alcaligenes eutrophus is plasmid dependent, J. Bacteriol., 162, 852, 10.1128/JB.162.2.852-854.1985

Sako, 1996, Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C, Int. J. Syst. Bacteriol., 46, 1070, 10.1099/00207713-46-4-1070

Sambrook, 1989, vol. 1–3

Schneider, 1988, Transfer and expression of lithoautotrophy and denitrification in a host lacking these metabolic activities, Appl. Environ. Microbiol., 54, 3167, 10.1128/AEM.54.12.3173-3176.1988

Siddiqui, 1993, Structure and function of the periplasmatic nitrate reductase in Alcaligenes eutrophus H16, J. Bacteriol., 175, 5867, 10.1128/jb.175.18.5867-5876.1993

Stewart, 1989, Structure of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12, Bacteriol., 171, 2229, 10.1128/jb.171.4.2229-2234.1989

Strunk, 1999

VÖlkl, 1993, Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum, Appl. Environ. Microbiol., 59, 2918, 10.1128/AEM.59.9.2918-2926.1993

Vollack, 1998, Localization of denitrification genes on the chromosomal map of Pseudomonas aeruginosa, Microbiology, 144, 441, 10.1099/00221287-144-2-441

Wientjes, 1979, Respiratory nitrate reductase. ist localization in the cytoplasmic membrane of Klebsiella aerogenes and Bacillus licheniformis, Eur. J. Biochem., 95, 61, 10.1111/j.1432-1033.1979.tb12939.x

Zhou, 1996, DNA recovery from soils of diverse composition, Appl. Env. Microbiol., 62, 316, 10.1128/AEM.62.2.316-322.1996

Zumft, 1992, The denitrifying procaryotes, vol. 1

Zumft, 1997, Cell biology and molecular basis of denitrification, Microbiol. Mol. Biol. Rev., 61, 533, 10.1128/.61.4.533-616.1997