Sex identification and genetic variation of Saccharina (Phaeophyta) gametophytes as revealed by inter-simple sequence repeat (ISSR) markers
Tóm tắt
Từ khóa
Tài liệu tham khảo
Adams JM, Gallagher JA, Donnison IS (2009) Fermentation study on Saccharina latissima for bioethanol production considering variable pre-treatments. J Appl Phycol 21:569–574
Aleksandrov OS, Divashuk MG, Karlov GI (2011) Development of a sex-specific molecular marker for Japanese hop Humulus japonicus Siebold & Zucc. Russ J Genet 47:1016–1020
Arnau G, Lallemand J, Bourgoin M (2003) Fast and reliable strawberry cultivar identification using inter simple sequence repeat (ISSR) amplification. Euphytica 129:69–79
Baghel RS, Kumari P, Bijo AJ, Gupta V, Reddy CRK, Jha B (2011) Genetic analysis and marker assisted identification of life phases of red alga Gracilaria corticata (J. Agardh). Mol Biol Rep 38:4211–4218
Bartsch I, Wiencke C, Bischof K, Buchholz CM, Buck BH, Eggert A, Feuerpfeil P, Hanelt D, Jacobsen S, Karez R, Karsten U, Molis M, Roleda MY, Schubert H, Schumann R, Valentin K, Weinberger F, Wiese J (2008) The genus Laminaria sensu lato: recent insights and developments. Eur J Phycol 43:1–86
Bi Y-H, Hu Y-J, Zhou Z-G (2011) Genetic variation of Laminaria japonica (Phaeophyta) populations in China as revealed by RAPD markers. Acta Oceanol Sinica 30(2):103–112
Billot C, Rousvoal S, Estoup A, Epplen JT, Saumitou-Laprade P, Valero M, Kloareg B (1998) Isolation and characterization of microsatellite markers in the nuclear genome of the brown alga Laminaria digitata (Phaeophyceae). Mol Ecol 7:1778–1781
Bornet B, Branchard M (2001) Nonanchored inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Mol Biol Rep 19:209–215
Bornet B, Antoine E, Bardouil M, Marcaillou-Le Baut C (2004) ISSR as new markers for genetic characterization and evaluation of relationships among phytoplankton. J Appl Phycol 16:285–290
Bornet B, Antoine E, Françoise S, Marcaillou-Le Baut C (2005) Development of sequence characterized amplified region markers from intersimple sequence repeat fingerprints for the molecular detection of toxic phytoplankton Alexandrium catenella (Dinophyceae) and Pseudo-nitzschia pseudodelicatissima (Bacillariophyceae) from French coastal waters. J Phycol 41:704–711
Carrasco B, Garcés M, Rojas P, Saud G, Herrera R, Retamales JB et al (2007) The Chilean strawberry (Fragaria chiloensis (L.) Duch.): genetic diversity and structure. J Am Soc Hortic Sci 132:501–506
Chen C, Xie C, Ji D, Xu Y, Guo L (2008) Genetic diversity of wild population of Porphyra haitanensis based on ISSR analysis. J Fish China 32(5):717–724
da Costa FR, Pereira TNS, Gabriel APC, Pereira MG (2011) ISSR markers for genetic relationships in Caricaceae and sex differentiation in papaya. Crop Breed Appl Biotechnol 11:352–357
Danilova TV, Karlov GI (2006) Application of inter simple sequence repeat (ISSR) polymorphism for detection of sex-specific molecular markers in hop (Humulus lupulus L.). Euphytica 151:15–21
Dayananda C, Sarada R, Kumar V, Ravishankar GA (2007) Isolation and characterization of hydrocarbon producing green alga Botryococcus braunii from Indian freshwater bodies. Electron J Biotechnol 10:78–91
Druehl LD, Robertson BR, Button DK (1989) Characterizing and sexing laminarialean meiospores by flow cytometry. Mar Biol 101:451–456
Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491
Fang TC (1983) A summary of the genetic studies of Laminaria japonica in China. In: Tseng CK (ed) Proceedings of the Joint China-U. S. Phycology Symposium. Science, Beijing, pp 123–136
Fang TC, Tai CH, Ou YL, Tcuei CC, Chen TC (1978) Some genetic observations on the monoploid breeding of Laminaria japonica. Sci China 21:401–408
FAO (2011) 2009 FAO Yearbook. Fishery and Aquaculture Statistics. Aquaculture Production. Food and Agriculture Organization of the United Nations, Rome, 221 p
Gangopadhyay G, Roy SK, Ghose K, Poddar R, Bandyopadhyay T, Basu D, Mukherjee KK (2007) Sex detection of Carica papaya and Cycas circinalis in pre-flowering stage by ISSR and RAPD. Curr Sci 92:524–526
Guillemin M-L, Huanel OR, Martínez EA (2012) Characterization of genetic markers linked to sex determination in the haploid-diploid red alga Gracilaria chilenesis. J Phycol 48:365–372
Gupta V, Baghel RS, Kumar M, Kumari P, Mantri VA, Reddy CRK, Jha B (2011) Growth and agarose characteristics of isomorphic gametophyte (male and female) and sporophyte of Gracilaria dura and their marker assisted selection. Aquaculture 318:389–396
Hall MM, Vis ML (2002) Genetic variation in Batrachospermum helminthosum (Batrachospermales, Rhodophyta) among and within stream reaches using intersimple sequence repeat molecular markers. Phycol Res 50:155–162
Hantula J, Dusabenygasani M, Hamelin RC (1996) Random amplified microsatellites (RAMS)—a novel method for characterizing genetic variation within fungi. Eur J For Pathol 26:159–166
He Y, Zou Y, Wang X, Zheng Z, Zhang D, Duan D (2003) Assessing the germplasm of Laminaria (Phaeophyceae) with random amplified polymorphic DNA (RAPD) method. Chin J Oceanol Limnol 21:141–148
Hsiao SIC, Druehl LD (1971) Environmental control of gametogenesis in Laminaria saccharina. I. The effects of light and culture media. Can J Bot 49:1503–1508
Hsiao SIC, Druehl LD (1973) Environmental control of gametogenesis in Laminaria saccharina. II. Correlation of nitrate and phosphate concentrations with gametogenesis and selected metabolites. Can J Bot 51:829–839
Hu Y-J, Zhou Z-G (2001) Extraction of RAPD-friendly DNA from Laminaria japonica (Phaeophyta) after enzymatic dissociation of the frozen sporophyte tissues. J Appl Phycol 13:415–422
Jiang J, Gill BS (2006) Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research. Genome 49:1057–1068
Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49:725–738
Korpelainen H, Bisang I, Hedenäs L, Kolehmainen J (2008) The first sex-specific molecular marker discovered in the moss Pseudocalliergon trifarium. J Hered 99:581–587
Lewis RJ, Jiang BY, Neushul M, Fei XG (1993) Haploid parthenogenetic sporophytes of Laminaria japonica (Phaeophyceae). J Phycol 29:363–369
Li DP, Zhou Z-G, Liu HH, Wu CY (1999) A new method of Laminaria japonica strain selection and sporeling raising by the use of gametophyte clones. Hydrobiologia 398/399:473–476
Li X, Cong Y, Yang G, Shi Y, Qu S, Li Z, Wang G, Zhang Z, Luo S, Dai H, Xie J, Jiang G, Liu J, Wang Y (2007) Trait evaluation and trial cultivation of Dongfang No. 2, the hybrid of a male gametophyte clone of Laminaria longissima (Laminariales, Phaeophyta) and a female one of L. japonica. J Appl Phycol 19:139–151
Liu Y-S, Li L-H, Wu W-K, Zhou Z-G (2009) A SCAR molecular marker specifically related to the female gametophytes of Saccharina (Laminaria) japonica (Phaeophyta). J Phycol 45:894–897
Liu Y, Bi Y-H, Zhou Z-G (2012) Karyological observation on Saccharina japonica chromosomes stained with DAPI. J Fish China 36(1):50–54
Lowe A, Harris S, Ashton P (2004) Ecological genetics: design, analysis and application. Blackwell, Oxford
Lynch MDJ, Sheath RG, Müller KM (2008) Phylogenetic position and ISSR-estimated intraspecific genetic variation of Bangia maxima (Bangiales, Rhodophyta). Phycologia 47:599–613
Martinez A, Destombe C, Quillet MC, Valero M (1999) Identification of random amplified polymorphic DNA (RAPD) markers highly linked to sex determination in the red alga Gracilaria gracilis. Mol Ecol 8:1533–1538
McHugh DJ (2003) A guide to the seaweed industry. FAO Fish Tech Pap, Rome 441:1–105
Mostafa N, Omar H, Tan SG, Napis S (2011) Studies on the genetic variation of the green unicellular alga Haematococcus pluvialis (Chlorophyceae) obtained from different geographical locations using ISSR and RAPD molecular marker. Molecules 16:2598–2608
Motomura T (1990) Ultrastructure of fertilization in Laminaria angustata (Phaeophyta, Laminariales) with emphasis on the behavior of centrioles, mitochondria and chloroplasts of the sperm. J Phycol 26:80–89
Motomura T (1991) Immunofluorescence microscopy of fertilization and parthenogenesis in Laminaria angustata (Phaeophyta). J Phycol 27:248–257
Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321–3323
Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269–5273
Noormohammadi Z, Baraki SG, Sheidai M (2011) Preliminarily report on molecular diversity of Sargassum species in Oman Sea by using ISSR and RAPD markers. Acta Biol Szeged 55:19–26
O’Doherty DC, Sherwood AR (2007) Genetic population structure of the Hawaiian alien invasive seaweed Acanthophora spicifera (Rhodophyta) as revealed by DNA sequencing and ISSR analyses. Pac Sci 61:223–233
Oliveira EJ, Pádua JG, Zucchi MI, Vencovsky R, Vieira MLC (2006) Origin, evolution and genome distribution of microsatellites. Genet Mol Biol 29:294–307
Paran I, Michelmore RW (1993) Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor Appl Genet 85:985–993
Parasnis AS, Ramakrishna W, Chowdari KV, Gupta VS, Ranjekar PK (1999) Microsatellite (GATA) n reveals sex specific differences in papaya. Theor Appl Genet 99:1047–1052
Patwary MU, van der Meer JP (1992) Genetics and breeding of cultivated seaweeds. Korean J Phycol 7:281–318
Reddy MP, Sarla N, Siddiq EA (2002) Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica 128:9–17
Rohlf FJ (2002) NTSYSpc. Numerical taxonomy and multivariate analysis system, version 2.0. Exeter Software, Applied Biostatistics Inc., Setauket, New York
Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York, A8.19-8.21
Sarmah P, Sarma RN (2011) Identification of a DNA marker linked to sex determination in Calamus tenuis Roxb., an economically important rattan species in northeast India. Mol Breed 27:115–118
Schwarzacher T (2008) Fluorescent in situ hybridization to detect transgene integration into plant genomes. Methods Mol Biol 478:227–246
Shan TF, Pang SJ (2010) Sex-linked microsatellite marker detected in the female gametophytes of Undaria pinnatifida (Phaeophyta). Phycol Res 58:171–176
Sharma K, Agrawal V, Gupta S, Kumar R, Prasad M (2008) ISSR marker-assisted selection of male and female plants in a promising dioecious crop: jojoba (Simmondsia chinensis). Plant Biotechnol Rep 2:239–243
Shen S (2008) Genetic diversity analysis with ISSR PCR on green algae Chlorella vulgaris and Chlorella pyrenoidosa. Chin J Oceanol Limnol 26:380–384
Shi C-J, Hu Z-M, He Y-J, Zou Y-P, Zhang D-M, Duan D-L (2005) Identification and assessing the cultivars of Laminaria Lamx. (Phaeophyceae) with molecular markers. J Integr Plant Biol 47:283–291
Shi Y, Yang G, Liu Y, Liao M, Li X, Cong Y (2007) Development of 18 polymorphic microsatellite DNA markers of Laminaria japonica (Phaeophyceae). Mol Ecol Notes 7:620–622
Sim MC, Lim PE, Gan SY, Phang SM (2007) Identification of random amplified polymorphic DNA (RAPD) marker for differentiating male from female and sporophytic thalli of Gracilaria changii (Rhodophyta). J Appl Phycol 19:763–769
Starr RC, Zeikus JA (1993) UTEX—the culture collection of algae at the University of Texas at Austin. J Phycol 29(Suppl):1–106
Sun X, Zhang XC, Mao YX, Liu JJ, Sui ZH, Qin S, Fei XG (2003) ISSR analysis of marine red algae Gracilaria (Rhodophyceae). High Technol Lett 13:89–93
Sun X, Zhang X, Mao Y, Sui Z, Qin S (2006) Identification of phase and sex-related ISSR markers of red alga Gracilaria lemaneiformis. J Ocean Univ China 5(1):82–84
Tai CH, Fang TC (1976) Some preliminary observations on the parthenogenesis in Laminaria japonica Aresch. Acta Genet Sinica 3:32–38
Tai CH, Fang TC (1977) The chromosomes of Laminaria japonica Aresch. Acta Genet Sinica 4:325–328
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
Tseng CK (2001) Algal biotechnology industries and research activities in China. J Appl Phycol 13:375–380
Vis ML (1999) Intersimple sequence repeats (ISSR) molecular markers to distinguish gametophytes of Batrachospermum boryanum (Batrachospermales, Rhodophyta). Phycologia 38:70–73
Wang X-L, Yang Y-X, Cong Y-Z, Duan D-L (2004) DNA fingerprinting of selected Laminaria (Phaeophyta) gametophytes by RAPD markers. Aquaculture 238:143–153
Wang X-L, Liu C-L, Li X-J, Cong Y-Z, Duan D-L (2005) Assessment of genetic diversities of selected Laminaria (Laminariales, Phaeophyta) gametophytes by inter-simple sequence repeat analysis. J Integr Plant Biol 47:753–758
Wang X, Wang D, Li D, Duan D (2006) Genetic analysis of the gametophytes of Undaria pinnatifida (Phaeophyceae) with ISSR method. Aquaculture 258:250–256
Wang X, Zhao F, Hu Z, Critchley AT, Morrell SL, Duan D (2008) Inter-simple sequence repeat (ISSR) analysis of genetic variation of Chondrus crispus populations from North Atlantic. Aquat Bot 88:154–159
Wu C, Lin G (1987) Progress in the genetics and breeding of economic seaweeds in China. Hydrobiologia 151/152:57–61
Yabu H (1964) Early development of several species of Laminariales in Hokkaido. Mem Fac Fish Hokkaido Univ 12:1–72
Yabu H (1973) Alternation of chromosomes in the life history of Laminaria japonica Aresch. Bull Fac Fish Hokkaido Univ 23:171–176
Yabu H, Yasui H (1991) Chromosome number in four species of Laminaria (Phaeophyta). Jpn J Phycol 39:185–187
Yasui H (1992) Chromosome numbers and a sex chromosome of Laminaria yendoana Miyabe (Phaeophyta). Nippon Suisan Gakkaishi 58:1385
Yeh FC, Yang R, Boyle TJ, Xiyan JM (2002) PopGene32. Microsoft Window-based freeware for population genetic analysis, version 1.32. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Alberta, Canada
Zhang Q-S, Tang X-X, Cong Y-Z, Qu S-C, Luo S-J, Yang G-P (2007) Breeding of an elite Laminaria variety 901 through inter-specific gametophyte crossing. J Appl Phycol 19:303–311
Zhao F, Wang X, Liu J, Duan D (2007) Population genetic structure of Sargassum thunbergii (Fucales, Phaeophyta) detected by RAPD and ISSR markers. J Appl Phycol 19:409–416
Zhao F, Liu F, Liu J, Ang PO Jr, Duan D (2008) Genetic structure analysis of natural Sargassum muticum (Fucales, Phaeophyta) populations using RAPD and ISSR markers. J Appl Phycol 20:191–198
Zhao J, Jiang P, Li N, Wang JF, Liu ZY, Qin S (2010) Analysis of genetic variation within and among Ulva pertusa (Ulvaceae, Chlorophyta) populations using ISSR markers. Chin Sci Bull 55:705–711
Zhao J, Jiang P, Liu Z, Wang J, Cui Y, Qin S (2011) Genetic variation of Ulva (Enteromorpha) prolifera (Ulvales, Chlorophyta)—the causative species of the green tides in the Yellow Sea, China. J Appl Phycol 23:227–233
Zhou Z-G, Wu C-Y (1998) Clone culture of Laminaria japonica and induction of its sporophytes. Chin J Biotechnol 14:109–111
Zhou LR, Dai JX, Shen SD (2004) An improved chromosome preparation from male gametophyte of Laminaria japonica (Heterokontophyta). Hydrobiologia 512:141–144