Sequence and evolutionary analysis of ribosomal DNA from Huanglongbing (HLB) isolates of Western India
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Anisimova, M., Gil, M., Dufayard, J. F., Dessimoz, C., & Gascuel, O. (2011). Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes. Systematic Biology, 60, 685–699.
Ash, C., Farrow, J. A., Dorsch, M., Stackebrandt, E., & Collins, M. D. (1991). Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA. International Journal of Systematic Bacteriology, 41, 343–346.
Bové, J. M. (2006). Huanglongbing: a destructive, newly-emerging, century-old disease of citrus. Journal of Plant Pathology, 88, 7–37.
Bové, J. M., & Ayres, A. J. (2007). Etiology of three recent diseases of citrus in Sao Paulo State: sudden death, variegated chlorosis and huanglongbing. IUBMB Life, 59, 346–354.
Coletta-Filho, H. D., Takita, M. A., Targon, M. L. P. N., & Machado, M. A. (2005). Analysis of 16S rDNA sequences from citrus huanglongbing bacteria reveal a different ‘Ca. Liberibacter’ strain associated with citrus disease in São Paulo. Plant Disease, 89, 848–852.
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792–1797.
Fox, G. E., Wisotzkey, J. D., & Jurtshuk, P., Jr. (1992). How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. International Journal of Systematic Bacteriology, 42, 166–170.
French, J. V., Kahlke, C., & da Graça, J. V. (2001). Asian psyllid found on Texas citrus. Citrus Center, 19, 1.
Garnier, M., Jagoueix-Eveillard, S., Cronje, P. R., Le Roux, H. F., & Bové, J. M. (2000). Genomic characterization of a liberibacter present in an ornamental rutaceous tree, Calodendrum capense, in the Western Cape Province of South Africa. Proposal of ‘Candidatus Liberibacter africanus subsp. capensis’. International Journal of Evolutionary Microbiology, 50, 2119–2125.
Gravena, S., Beretta, M. J. G., Paiva, P. E. B., Gallao, R., & Yamamoto, P. T. (1996). Seasonal abundance and natural enemies of Diaphorina citri (Hemiptera:Psyllidae) in citrus orchards of São Paulo State, Brazil. In J. V. da Graca, P. Moreno, & R. K. Yokomi (Eds.), Proceedings of the 13th Conference of International Organization of Citrus Virologists. Riverside, CA, USA: Department of Plant Pathology, University of California.
Green, G. C., & Catling, H. D. (1971). Weather-induced mortality of the citrus psylla Trioza erytreae, a vector of greening virus, in some citrus-producing areas of South Africa. Agricultural Meteorology, 8, 305–317.
Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology, 59, 307–321.
Halbert, S. E., & Manjunath, K. L. (2004). Asian citrus psyllids (Sternorryncha:Psyllidae) and greening disease of citrus: a literature review and assessment of risk in Florida. Florida Entomologist, 87, 330–353.
Halbert, S. E., Niblett. C. L., Manjunath, K. L., Lee, R. F., & Brown, L. G. (2003). Establishment of two new vectors of citrus pathogens in Florida. In Proceedings of the International Society of Citriculture (Orlando, FL, USA). (pp. 1016–1017).
Jagoueix, S., Bové, J. M., & Garnier, M. (1994). The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria. International Journal of Systematic Bacteriology, 44, 379–386.
Jagoueix, S., Bové, J. M., & Garnier, M. (1996). PCR detection of the two ‘Candidatus’ Liberibacter species associated with greening disease of citrus. Molecular Cell Probes, 10, 43–50.
Jagoueix, S., Bové, J. M., & Garnier, M. (1997). Comparison of the 16S/23S ribosomal intergenic regions of “Candidatus Liberibacter asiaticum” and “Candidatus Liberibacter africanum,” the two species associated with citrus huanglongbing (greening) disease. International Journal of Systematic Bacteriology, 47, 224–227.
Kim, J. S., & Wang, N. (2009). Characterization of copy numbers of 16S rDNA and 16S rRNA of Candidatus Liberibacter asiaticus and the implication in detection in planta using quantitative PCR. BMC Research Notes, 2, 37.
Martinelli, F., Uratsu, S. L., & Albrecht, U. (2012). Transcriptome profiling of citrus fruit response to huanglongbing disease. PLoS One, 7, e38039.
Perriere, G., & Gouy, M. (1996). WWW-query: an on-line retrieval system for biological sequence banks. Biochimie, 78, 364–369.
Roistacher, C. N. (1991). Graft transmissible diseases of citrus: Handbook for detection and diagnosis. Rome, Italy: FAO.
Sagaram, U. S., DeAngelis, K. M., Trivedi, P., Andersen, G. L., Lu, S. E., & Wang, N. (2009). Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Applied and Environmental Microbiology, 75, 1566–1574.
Sechler, A., Schuenzel, E. L., Cooke, P., Donnua, S., Thaveechai, N., Postnikova, E., et al. (2009). Cultivation of ‘Candidatus Liberibacter asiaticus’, ‘Ca. L. africanus’, and ‘Ca. L. americanus’ associated with huanglongbing. Phytopathology, 99, 480–486.
Su, H-J., & Hung, T-H. (2001). Detection of greening fastidious bacteria (GFB) causing citrus greening by dot blot hybridization and polymerase chain reaction with DNA probes and primer pairs. In Technical Notes of Food and Fertilizer Technology Centre (Wenchow St., Taipei, Taiwan ROC), Plant Protection No. 2001–7. http://fftc.imita.org/htmlarea_file/library/20110714100740/tn2001007.pdf
Teixeira, D. C., Saillard, C., Eveillard, S., Danet, J. L., da Costa, P. I., Ayres, A. J., et al. (2005). ‘Candidatus Liberibacter americanus’, associated with citrus huanglongbing (greening disease) in Sao Paulo State, Brazil. International Journal of Systematic and Evolutionary Microbiology, 55, 1857–1862.
Tomimura, K., Miyata, S., Furuya, N., Kubota, K., Okuda, M., Subandiyah, S., et al. (2009). Evaluation of genetic diversity among ‘Candidatus Liberibacter asiaticus’ isolates collected in Southeast Asia. Phytopathology, 99, 1062–1069.
Vandamme, P., Pot, B., Gillis, M., de Vos, P., Kersters, K., & Swings, J. (1996). Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiological Review, 60, 407–438.
Wang, X., Zhou, C., Deng, X., Su, H., & Chen, J. (2012). Molecular characterization of a mosaic locus in the genome of ‘Candidatus Liberibacter asiaticus’. BMC Microbiology, 12, 18.
