Recombination machinery engineering for precise genome editing in methylotrophic yeast Ogataea polymorpha
Tài liệu tham khảo
Aird, 2018, Increasing Cas9-mediated homology-directed repair efficiency through covalent tethering of DNA repair template, Commun. Biol., 1, 54, 10.1038/s42003-018-0054-2
Arjun, 2010, Enhancement of gene targeting in human cells by intranuclear permeation of the Saccharomyces cerevisiae Rad52 protein, Nucleic Acids Res., 38, e149, 10.1093/nar/gkq486
Cao, 2017, Centromeric DNA facilitates nonconventional yeast genetic engineering, ACS Synth. Biol., 6, 1545, 10.1021/acssynbio.7b00046
Ceccaldi, 2016, Repair pathway choices and consequences at the double-strand break, Trends Cell Biol., 26, 52, 10.1016/j.tcb.2015.07.009
Chang, 2017, Non-homologous DNA end joining and alternative pathways to double-strand break repair, Nat. Rev. Mol. Cell Bio, 18, 495, 10.1038/nrm.2017.48
Charpentier, 2018, CtIP fusion to Cas9 enhances transgene integration by homology-dependent repair, Nat. Commun., 9, 1133, 10.1038/s41467-018-03475-7
Clomburg, 2017, Industrial biomanufacturing: the future of chemical production, Science, 355, aag0804, 10.1126/science.aag0804
Cohen-Fix, 1996, Anaphase initiation in Saccharomyces cerevisiae is controlled by the APC-dependent degradation of the anaphase inhibitor Pds1p, Gene Dev., 10, 3081, 10.1101/gad.10.24.3081
Cordova, 2020, Direct production of fatty alcohols from glucose using engineered strains of Yarrowia lipolytica, Metab. Eng. Comm., 10, e00105, 10.1016/j.mec.2019.e00105
D’Espaux, 2017, Engineering high-level production of fatty alcohols by Saccharomyces cerevisiae from lignocellulosic feedstocks, Metab. Eng., 42, 115, 10.1016/j.ymben.2017.06.004
Di, 2005, Potentiation of gene targeting in human cells by expression of Saccharomyces cerevisiae Rad52, Nucleic Acids Res., 33, 4639, 10.1093/nar/gki778
Gutschner, 2016, Post-translational regulation of Cas9 during G1 enhances homology-directed repair, Cell Rep., 14, 1555, 10.1016/j.celrep.2016.01.019
Heyer, 2010, Regulation of homologous recombination in eukaryotes, Annu. Rev. Genet., 44, 113, 10.1146/annurev-genet-051710-150955
Jayathilaka, 2008, A chemical compound that stimulates the human homologous recombination protein RAD51, Proc. Natl. Acad. Sci. U S A, 105, 15848, 10.1073/pnas.0808046105
Johnson, 1996, Elevated levels of recombinational DNA repair in human somatic cells expressing the Saccharomyces cerevisiae RAD52 gene, Mutat. Res./DNA Repair, 363, 179, 10.1016/0921-8777(96)00007-9
Juergens, 2018, Genome editing in Kluyveromyces and Ogataea yeasts using a broad-host-range Cas9/gRNA co-expression plasmid, FEMS Yeast Res., 18, foy012, 10.1093/femsyr/foy012
Krejci, 2012, Homologous recombination and its regulation, Nucleic Acids Res., 40, 5795, 10.1093/nar/gks270
Liachko, 2014, An autonomously replicating sequence for use in a wide range of budding yeasts, FEMS Yeast Res., 14, 364, 10.1111/1567-1364.12123
Liu, 2020, Exploiting nonionic surfactants to enhance fatty alcohol production in Rhodosporidium toruloides, Biotechnol. Bioeng., 117, 1418, 10.1002/bit.27285
Manfrão-Netto, 2019, Advances in using Hansenula polymorpha as chassis for recombinant protein production, Front. Bioeng. Biotech., 7, 94, 10.3389/fbioe.2019.00094
McGinn, 2018, Molecular mechanisms of CRISPR-Cas spacer acquisition, Nat. Rev. Microbiol., 17, 7, 10.1038/s41579-018-0071-7
Mcneil, 2017, Optimization of C16 and C18 fatty alcohol production by an engineered strain of Lipomyces starkeyi, J. Ind. Microbiol. Biotechnol., 45, 1, 10.1007/s10295-017-1985-1
Mimitou, 2008, Sae2, Exo1 and Sgs1 collaborate in DNA double-strand break processing, Nature, 455, 770, 10.1038/nature07312
Nambu-Nishida, 2017, Development of a comprehensive set of tools for genome engineering in a cold-and thermo-tolerant Kluyveromyces marxianus yeast strain, Sci. Rep., 7, 1, 10.1038/s41598-017-08356-5
O'Driscoll, 2006, The role of double-strand break repair-insights from human genetics, Nat. Rev. Genet., 7, 45, 10.1038/nrg1746
Olson, 2015, Ethanol production by engineered thermophiles, Curr. Opin. Biotechnol., 33, 130, 10.1016/j.copbio.2015.02.006
Phithakrotchanakoon, 2018, CRISPR-Cas9 enabled targeted mutagenesis in the thermotolerant methylotrophic yeast Ogataea thermomethanolica, FEMS Microbiol. Lett., 365, fny105, 10.1093/femsle/fny105
Saraya, 2012, Novel genetic tools for Hansenula polymorpha, FEMS Yeast Res., 12, 271, 10.1111/j.1567-1364.2011.00772.x
Schwartz, 2017, CRISPRi repression of nonhomologous end-joining for enhanced genome engineering via homologous recombination in Yarrowia lipolytica, Biotechnol. Bioeng., 114, 2896, 10.1002/bit.26404
Schwartz, 2015, Synthetic RNA polymerase III promoters facilitate high-efficiency CRISPR-Cas9-mediated genome editing in Yarrowia lipolytica, ACS Synth. Biol., 5, 356, 10.1021/acssynbio.5b00162
Shao, 2008, DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways, Nucleic Acids Res., 37, e16, 10.1093/nar/gkn991
Vispé, 1998, Overexpression of Rad51 protein stimulates homologous recombination and increases resistance of mammalian cells to ionizing radiation, Nucleic Acids Res., 26, 2859, 10.1093/nar/26.12.2859
Voronovsky, 2009, Development of strains of the thermotolerant yeast Hansenula polymorpha capable of alcoholic fermentation of starch and xylan, Metab. Eng., 11, 234, 10.1016/j.ymben.2009.04.001
Wang, 2018, Efficient CRISPR–Cas9 mediated multiplex genome editing in yeasts, Biotechnol. Biofuels, 11, 277, 10.1186/s13068-018-1271-0
Weninger, 2018, Expanding the CRISPR/Cas9 toolkit for Pichia pastoris with efficient donor integration and alternative resistance markers, J. Cell. Biochem., 119, 3183, 10.1002/jcb.26474
Yáñez, 1999, Gene targeting is enhanced in human cells overexpressing hRAD51, Gene Ther., 6, 1282, 10.1038/sj.gt.3300945
Yang, 2016, Enrichment of G2/M cell cycle phase in human pluripotent stem cells enhances HDR-mediated gene repair with customizable endonucleases, Sci. Rep., 6, 21264, 10.1038/srep21264
Yu, 2018, Reprogramming yeast metabolism from alcoholic fermentation to lipogenesis, Cell, 174, 1549, 10.1016/j.cell.2018.07.013
Zhou, 2016, Harnessing yeast peroxisomes for biosynthesis of fatty-acid-derived biofuels and chemicals with relieved side-pathway competition, J. Am. Chem. Soc., 138, 15368, 10.1021/jacs.6b07394
Zhou, 2016, Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories, Nat. Commun., 7, 11709, 10.1038/ncomms11709
Zhou, 2012, Modular pathway engineering of diterpenoid synthases and the mevalonic acid pathway for miltiradiene production, J. Am. Chem. Soc., 134, 3234, 10.1021/ja2114486