Pseudocryptic Diversity versus Cosmopolitanism in Diatoms: a Case Study on Navicula cryptocephala Kütz. (Bacillariophyceae) and Morphologically Similar Taxa

Protist - Tập 161 - Trang 353-369 - 2010
Aloisie Poulíčková1, Jana Veselá2, Jiří Neustupa2, Pavel Škaloud2
1Department of Botany, Faculty of Science, Palacký University, Str. 17. listopadu 1192/12, CZ 771 46 Olomouc, Czech Republic
2Department of Botany, Faculty of Science, Charles University of Prague, Benátská 2, Praha, CZ 128 01, Czech Republic

Tài liệu tham khảo

Behnke, 2004, Reproductive compatibility and rDNA sequence analyses in the Sellaphora pupula species complex (Bacillariophyta), J Phycol, 40, 193, 10.1046/j.1529-8817.2004.03037.x

Beszteri, 2005, Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity, Protist, 156, 317, 10.1016/j.protis.2005.07.002

Beszteri, 2007, An assessment of cryptic genetic diversity within the Cyclotella meneghiniana species complex (Bacillariophyta) based on nuclear and plastid genes, and amplified fragment length polymorphisms, Eur J Phycol, 42, 47, 10.1080/09670260601044068

Bookstein, 1997, Landmark methods for forms without landmarks: morphometrics of group differences in outline shape, Medical Image Anal, 1, 225, 10.1016/S1361-8415(97)85012-8

Bruder, 2008, Morphological and molecular investigations of naviculoid diatoms. III. Hippodonta and Navicula s.s, Diatom Res, 23, 331, 10.1080/0269249X.2008.9705760

Coleman, 2000, The significance of a coincidence between evolutionary landmarks found in mating affinity and a DNA Sequence, Protist, 151, 1, 10.1078/1434-4610-00002

Coleman, 2005, Paramecium aurelia revisited, J Eukaryot Microbiol, 52, 68, 10.1111/j.1550-7408.2005.3327r.x

Cox, 1995, Studies on the diatom genus Navicula Bory. VII. The identity and typification of Navicula gregaria Donkin, N. cryptocephala Kütz. and related taxa, Diatom Res, 10, 91, 10.1080/0269249X.1995.9705330

Debat, 2003, Allometric and nonallometric components of Drosophila wing shape respond differently to developmental temperature, Evolution, 57, 2773

de Rijk, 2003, RnaViz2: an improved representation of RNA secondary structure, Bioinformatics, 19, 299, 10.1093/bioinformatics/19.2.299

de Vargas, 1999, Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces, Proc Natl Acad Sci USA, 96, 2864, 10.1073/pnas.96.6.2864

de Vargas, 2002, A molecular approach to biodiversity and biogeography in the planktonic foraminifer Globigerinella siphonifera dÓrbigny, Mar Micropaleontol, 45, 101, 10.1016/S0377-8398(02)00037-3

Duff, 2008, Application of combined morphological–molecular approaches to the identification of planktonic protists from environmental samples, J Eukaryot Microbiol, 55, 306, 10.1111/j.1550-7408.2008.00328.x

Evans, 2007, An assessment of potential diatom “Barcode” genes (cox1, rbcL, 18S and ITS r DNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta), Protist, 158, 349, 10.1016/j.protis.2007.04.001

Evans, 2008, A molecular systematic approach to explore diversity within the Sellaphora pupula species complex (Bacillariophyta), J Phycol, 44, 215, 10.1111/j.1529-8817.2007.00454.x

Evans, 2009, Highly differentiated populations of the freshwater diatom Sellaphora capitata suggest limited dispersal and opportunities for allopatric speciation, Protist, 160, 386, 10.1016/j.protis.2009.02.001

Fenchel, 2004, The ubiquity of small organisms: patterns of global and local diversity, Bioscience, 54, 777, 10.1641/0006-3568(2004)054[0777:TUOSSP]2.0.CO;2

Finlay, 2002, Global dispersal of free-living microbial eukaryote species, Science, 296, 1061, 10.1126/science.1070710

Finlay, 2002, Hypothesis: the rate and scale of dispersal of freshwater diatom species is a function of their global abundance, Protist, 153, 261, 10.1078/1434-4610-00103

Fránková, 2009, Geometric morphometrics – a sensitive method for diatom morphospecies distinguishing: a case study on the sympatric populations of Reimeria sinuata and Gomphonema tergestinum (Bacillariophyceae) from the River Bečva, Czech Republic, Nova Hedwigia, 88, 81, 10.1127/0029-5035/2009/0088-0081

Geitler, 1952, Untersuchungen über Kopulation und Auxosporenbildung pennater Diatomeen III. Gleichartigkeit der Gonenkerne und Verhalten des Heterochromatins bei Navicula radiosa, Österr Bot Z, 99, 469, 10.1007/BF01288549

Guillard, 1972, Yellow-green algae with chlorophyllide c, J Phycol, 8, 10

Harper, 1994, Did Europeans Introduce Asterionella formosa Hassall to New Zealand?, 479

Hammer, 2001, PAST: Paleontological Statistics Software Package for Education and Data Analysis, Palaeontol Electro, 4, 1

Hašler, 2008, Epipelic cyanobacteria and algae: a case study from Czech fishponds, Fottea, 8, 133, 10.5507/fot.2008.012

Hepperle D (2004) SeqAssem©. A Sequence Analysis Tool, Contig Assembler and Trace Data Visualization Tool for Molecular Sequences. Available from: 〈www.sequentix.de/software_seqassem.php〉

Hustedt, 1930, Bacillariophyta, Vol. 10, 1

Hutchinson, 1961, The paradox of the plankton, Am Nat, 95, 137, 10.1086/282171

Kilroy, 2008, A rapid technique for assessing the suitability of areas for invasive species applied to New Zealand's rivers, Divers Distrib, 14, 262, 10.1111/j.1472-4642.2007.00406.x

Krammer, 1997, Bacillariophyceae 1.Teil: Naviculaceae, Vol. 2/1, 1

Leliaert, 2007, Molecular phylogeny of the Siphonocladales (Chlorophyta: Cladophorophyceae), Mol Phylogen Evol, 44, 1237, 10.1016/j.ympev.2007.04.016

Mann, 1999, The species concept in diatoms, Phycologia, 38, 437, 10.2216/i0031-8884-38-6-437.1

Mann, 2007, Molecular Genetics and the Neglected Art of Diatomics, 231

Mann, 2008, Revision of the diatom genus Sellaphora: a first account of the larger species in the British Isles, Fottea, 8, 15, 10.5507/fot.2008.002

Nylander JAA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University. Available from 〈http://www.abc.se/∼nylander/〉

Potapova, 2007, Morphological and ecological variation within the Achnanthidium minutissimum (Bacillariophyceae) species complex, J Phycol, 43, 561, 10.1111/j.1529-8817.2007.00332.x

Poulíčková, 2006, Sexual reproduction in Navicula cryptocephala (Bacillariophyceae), J Phycol, 42, 872, 10.1111/j.1529-8817.2006.00235.x

Poulíčková, 2008, Autogamous auxosporulation in Pinnularia nodosa (Bacillariophyceae), J Phycol, 44, 350, 10.1111/j.1529-8817.2008.00475.x

Poulíčková, 2007, Heterothallic auxosporulation, incunabula and perizonium in Pinnularia (Bacillariophyceae), Eur J Phycol, 42, 367, 10.1080/09670260701476087

Rodriguez, 2005, Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae), Environ Microbiol, 7, 853, 10.1111/j.1462-2920.2005.00758.x

Rohlf FJ (2007) TPS Series – Department of Ecology and Evolution, State University New York at Stony Brook, New York. Available from 〈http://life.bio.sunysb.edu/morph/〉

Round, 1953, An investigation of two benthic algal communities in Malham Tarn. Yorkshire, J Ecol, 41, 174, 10.2307/2257108

Round, 1990

Sato, 2008, A new araphid diatom genus Psammoneis gen. nov. (Plagiogrammaceae, Bacillariophyta) with three new species based on SSU and LSU rDNA sequence data and morphology, Phycologia, 47, 510, 10.2216/08-04.1

Schöniger, 1994, A stochastic model for the evolution of autocorrelated DNA sequences, Mol Phylogenet Evol, 3, 240, 10.1006/mpev.1994.1026

Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts

Špačková, 2009, Seasonal succession of epipelic algae: a case study on a mesotrophic pond in a temperate climate, Fottea, 9, 121, 10.5507/fot.2009.011

Telford, 2006, Dispersal limitations matter for microbial morphospecies, Science, 312, 1015, 10.1126/science.1125669

Telford, 2007, Response to comment on “dispersal limitations matter for microbial morphospecies”, Science, 316, 1124, 10.1126/science.1137697

Theriot, 2006, Late Quaternary rapid morphological evolution of an endemic diatom in Yellowstone Lake, Wyoming, Paleobiology, 32, 38, 10.1666/0094-8373(2006)032[0038:LQRMEO]2.0.CO;2

Verbruggen, 2008, Building trees of algae: some advances in phylogenetic and evolutionary analysis, Eur J Phycol, 43, 229, 10.1080/09670260802207530

Vyverman, 2007, Historical processes constrain patterns in global diatom diversity, Ecology, 88, 1924, 10.1890/06-1564.1

Veselá, 2009, Morphometric study of Navicula morphospecies (Bacillariophyta) with respect to diatom life cycle, Fottea, 9, 307, 10.5507/fot.2009.030

Yeung, 1996, Sequence data for two large-subunit rRNA genes from an Asian strain of Alexandrium catenella, Appl Environ Microbiol, 62, 4199, 10.1128/aem.62.11.4199-4201.1996

Zelditch, 2004

Zuker, 2003, Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Res, 31, 3341, 10.1093/nar/gkg595