Phylogenetic Relationships, Divergence Time Estimation, and Global Biogeographic Patterns of Calopterygoid Damselflies (Odonata, Zygoptera) Inferred from Ribosomal DNA Sequences

Systematic Biology - Tập 54 Số 3 - Trang 347-362 - 2005
Henri J. Dumont1, Jacques R. Vanfleteren1, Johan F. De Jonckheere2, Peter H. H. Weekers1
1Department of Biology, Ghent University, Ledeganckstraat 35, B-9000 Ghent, Belgium E-mail: [email protected] (H.J.D.)
2Protozoology Laboratory, Scientific Institute of Public Health—Louis Pasteur J. Wytsmanstraat 14, B-1050 Brussels, Belgium

Tóm tắt

Từ khóa


Tài liệu tham khảo

Artiss, 2001, Molecular phylogenetic analysis of the dragonfly genera Libellula, Ladona and Plathemis (Odonata: Libellulidae) based on mitochondrial cyrochrome oxidase I and 16S rRNA sequence data, Mol. Phylogen. Evol., 18, 348, 10.1006/mpev.2000.0867

Asahina, 1976, Description of one new genus and two new species of Caliphaeaidae (Odonata, Calopterygidae) from Thailand, with taxonomic notes on the subfamily Kontyu (Tokyo), 387

Bechli, 1996, Morphologische Untersuchungen am Flügelgeäder der rezenten Libellen und deren Stammgruppenvertreter (Insecta; Pterygota; Odonata); unter besonderer Berücksichtigung der Phylogenetischen Systematik und des Grundplanes de *Odonaten, Petalura, spec.-vol., 2, 1

Beebe, 1999, DNA sequence analysis of the ribosomal DNA ITS2 region for the Anopheles punctulatus group of mosquitoes, Insect. Mol. Biol., 8, 381, 10.1046/j.1365-2583.1999.83127.x

Bernardi, 1988, Compositional patterns in vertebrate genomes: conservation and change in evolution, J. Mol. Evol., 28, 7, 10.1007/BF02143493

Briggs, 2003, The biogeography and tectonic history of India, J. Biogeography, 30, 381, 10.1046/j.1365-2699.2003.00809.x

Britton, 2002, Phylogenetic dating with confidence intervals using mean path-lengths, Mol. Phylogen. Evol., 24, 58, 10.1016/S1055-7903(02)00268-3

Buchholtz, 1955, Eine vergleichende Ethologie der orientalischen Calopterygiden (Odonata) als Beitrag zu ihrer systematischen Deutung, Z. Tierpsychol., 12, 363

Chippendale, 1999, Phylogenetic relationships of North American damselflies of the genus Ischnura (Odonata: Zygoptera: Coenagrionidae) based on sequences of three mitochondrial genes, Mol. Phyl. Evol., 11, 110, 10.1006/mpev.1998.0559

De Rijk, 1993, DCSE v2.54, an interactive tool for sequence alignment and secondary structure research, Comput. Appl. Biosci., 9, 735

Dijkstra, 2004, Critical species of Odonata in Madagascar, Int. J. Odonatol., 7, 219, 10.1080/13887890.2004.9748211

Dumont, 1987, Breaking the Calopteryx-bottleneck: Taxonomy and range of Calopteryx splendens waterstonii Schneider, 1984 and C. splendens tschaldirica Bartenef, 1909 (Zygoptera; Calopterygidae), Odonatologica, 16, 239

Dumont, 1993, The Calopteryx splendens cline in southwestern France, analysed by quantitative wingspot analysis (Zygoptera: Calopterygidea), Odonatologica, 22, 345

Felsenstein, 1985, Confidence limits on phylogenies: An approach using the bootstrap, Evolution, 39, 783, 10.1111/j.1558-5646.1985.tb00420.x

Fritz, 1994, Sequence analysis of the ribosomal DNA internal transcribed spacer 2 from populations of Anophelesnuneztovari (Diptera: Culicidae)??., Mol. Biol. Evol., 11, 406

Garrison, 2005, A synopsis of the genera Mnesarete Cowley, Bryoplathanon gen. Nov. and Ormenophlebia gen. Nov. (Odonata: Calopterygidae), Science

Gottschling, 2001, Secondary structure of the ITS1 transcript and its application in a reconstruction of a phylogeny of Boraginales, Pl. Biol., 3, 629, 10.1055/s-2001-19371

Hewitt, 2000, The genetic legacy of the Quaternary ice ages, Nature, 405, 907, 10.1038/35016000

Heymer, 1972, Comportement social et territorial des Calopterygidae (Odonata, Zygoptera), Ann. Soc. Ent. Fr. (N.S.), 8, 3, 10.1080/21686351.1972.12278922

Huelsenbeck, 1996, Combining data in phylogenetic analysis, TREE, 11, 152

Huelsenbeck, 2001, MrBayes: Bayesian inference of phylogenetic trees, Bioinformatics, 17, 754, 10.1093/bioinformatics/17.8.754

Kambhampati, 1999, Phylogenetic relationships among Libellula, Ladona and Plathemis (Odonata: Libellulidae) based on DNA sequence of mitochondrial 16S rRNA gene, Syst. Entomol., 24, 37, 10.1046/j.1365-3113.1999.00066.x

Kiener, 1996, Fishes of the continental waters of Madagascar, Biogeography and ecology of madagascar, Pages 477

Lindeboom M. Fortpflanzungsbiologie der Gebänderten Prachtlibelle Calopteryx splendens (Calopterygidae, Odonata) 1996 Germany University of Freiburg PhD. Thesis

Lutzoni, 2001, Major fungal lineages are derived from lichen symbiotic ancestors, Nature, 411, 937, 10.1038/35082053

Maibach, 1985, Révision systématique du genre Calopteryx Leach (Odonata, Zygoptera) pour l'Europe Occidentale. I. Analyses biochemique, Mitt. Schweiz Ent. Ges., 58, 477

May, 1997, The internal transcribed spacers2 exhibits a common secondary structure in green algae and flowering plants, J. Mol. Evol., 44, 258, 10.1007/PL00006143

Misof, 2000, A Phylogeny of the damselfly genus Calopteryx (Odonata) using mitochondrial 16S rDNA markers, Mol. Phyl. Evol., 15, 5, 10.1006/mpev.1999.0724

Misof, 2001, Phylogenetic Signal and its Decay in Mitochondrial SSU and LSU rRNA Gene Fragments of Anisoptera, Mol. Biol. Evol., 18, 27, 10.1093/oxfordjournals.molbev.a003717

Morgan, 1998, Trematode and monogenean rRNA ITS2 secondary structures support a four-domain model, J. Mol. Evol., 47, 406, 10.1007/PL00006398

Nel, 1994, Découverte du premier Calopteryx fossile du Miocène de l'Ardèche (Odonata, Calopterygidae), Bull. Soc. Entom. Fr., 99, 27, 10.3406/bsef.1994.17034

Nel, 1992, Les Odonates fossiles: État actuel des connaissances. Huitième Partie: Les Calopterygoidea fossiles (Odonata, Zygoptera), Bull. Soc. Ent. Fr., 97, 381, 10.3406/bsef.1992.17831

Nicholas, 1997, GeneDoc: Analysis and visualization of genetic variation, EMBNEW.NEWS, 4, 14

Page, 1996, TREEVIEW: An application to display phylogenetic trees on personal computers, Comput. Appl. Biosci., 12, 357

Porter, 1991, Species-diagnostic differences in a ribosomal DNA internal transcribed spacer from sibling species Anopheles freeborniAnopheles hermsi (Diptera: Culicidae), Am. J. Trop. Med. Hyg., 45, 271, 10.4269/ajtmh.1991.45.271

Posada, 1998, ModelTest: Testing the model of DNA substitution, Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817

Rehn, 2003, Phylogenetic analysis of higher-level relationships of Odonata, Syst. Entomol., 28, 181, 10.1046/j.1365-3113.2003.00210.x

Samraoui, 2002, The Enallagma (Odonata, Zygoptera: Coenagrionidae) of the western and central Palaearctic, Odonatologica, 31, 371

Samraoui, 2003, Two taxa within the North African Lestes virens complex (Odonata, Zygoptera), Odonatologica, 32, 131

Sanderson, 2002, Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach, Mol. Biol. Evol., 19, 101, 10.1093/oxfordjournals.molbev.a003974

Sanderson, 2003, r8s: Inferring absolute rates of molecular evolution and divergence Times in absence of a molecular clock, Bioinformatics, 19, 301, 10.1093/bioinformatics/19.2.301

Schulenburg, 2001, Extreme length and length variation in the first ribosomal internal transcribed spacer of ladybird beetles (Coleoptera: Coccinellidae), Mol. Biol. Evol., 18, 648, 10.1093/oxfordjournals.molbev.a003845

Sélys-Longchamps, 1854, Monographie des Caloptérygines, Mém. Soc. Sci. Liège, 9

Swofford, 2003, PAUP*: Phylogenetic analysis using parsimony (*and other methods)

Swofford, 1996, The topology-dependent permutation test for monophyly does not test for monophyly, Syst. Bio., 45, 575, 10.1093/sysbio/45.4.575

Tang, 1996, Intra-specific heterogeneity of their DNA internal transcribed spacer in the Simulium damnosum (Diptera: Simuliidae) complex, Mol. Biol. Evol., 13, 244, 10.1093/oxfordjournals.molbev.a025561

Tiffney, 1985, The Eocene North-Atlantic land-bridge—its importance in tertiary and modern phytogeography of the northern hemisphere. 2, J. Arnold Arobor., 66, 243, 10.5962/bhl.part.13183

Thompson, 1994, CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673

Thorne, 2002, Divergence time and evolutionary rate estimation with multilocus data, Syst. Biol., 51, 689, 10.1080/10635150290102456

Torres, 1990, GC balance in the internal transcribed spacers ITS1 and ITS2 of nuclear ribosomal DNA, J. Mol. Evol., 30, 170, 10.1007/BF02099943

Weekers, 2001, Phylogenetic relationship, inferred from ribosomal ITS sequences, and detecting biogeographic patterns in the representatives of the genus Calopteryx (Insecta: Odonata) of the West Mediterranean and adjacent West European zone, Mol. Phylogenet. Evol., 20, 89, 10.1006/mpev.2001.0947

Weekers, 1994, Sequence variations in small-subunit ribosomal RNAs of Hartmanella vermiformis and their phylogenetic implications, Mol. Biol. Evol., 11, 684

Yang, 2003, Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points with application to a radiation of cute-looking mouse lemur species, Syst. Biol., 52, 705, 10.1080/10635150390235557

Zakharov, 2004, Molecular phylogeny, historical biogeography, and divercence time estimates for swallowtail butterflies of the Genus Papilio (Lepidoptera: Papilionidae), Syst. Biol., 53, 193, 10.1080/10635150490423403

Zuker, 2003, Mfold: Webserver for nucleic acid folding and hybridization prediction, Nucleic Acids Res., 31, 3406, 10.1093/nar/gkg595