Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences

Molecular Phylogenetics and Evolution - Tập 33 Số 3 - Trang 647-663 - 2004
Maarit Jaarola1, Natália Martínková2,3, İslam Gündüz4,1, Cecilia Brunhoff1, Jan Zima3, Adam Nadachowski5, Giovanni Amori6, Н. Ш. Булатова7, Basil Chondropoulos8, Stella Fraguedakis-Tsolis8, Jorge González‐Esteban9, María José López‐Fuster10, Andrei Kandaurov11, Haluk Kefelioğlu4, María da Luz Mathias12, Idoia Villate9, Jeremy B. Searle13
1Department of Cell and Organism Biology, Genetics Building, Lund University, Sölvegatan 29, SE-223 62 Lund, Sweden
2Biodiversity Research Group, Department of Zoology, Charles University, Viničná 7, 128 44 Praha 2, Czech Republic
3Institute of Vertebrate Biology, Academy of Science of the Czech Republic, Studenec 122, 675 02 Koněšín, Czech Republic
4Department of Biology, Faculty of Arts and Sciences, Ondokuz Mayis University, TR-55139 Kurupelit, Samsun, Turkey
5Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Slawkowska 17, 31-016, Krakow, Poland
6CNR—Institute of Ecosystem Studies, Via A. Borelli 50, 00161 Rome, Italy
7Severtzov Institute of Ecology and Evolution, Russian Academy of Sciences, 33 Leninsky Prospect, 117071 Moscow, Russia
8Section of Animal Biology, Department of Biology, University of Patra, GR-26 500 Rion, Patras, Greece
9Sociedad de Ciencias Aranzadi, Alto de Zorroaga, E20014 San Sebastián, Spain
10Department of Animal Biology, Faculty of Biology, University of Barcelona, Avinguda Diagonal 645, 08028 Barcelona, Spain
11Institute of Zoology, Georgian Academy of Science, 31 Chavchavadze Av., Tbilisi, Georgia
12Centre for Environmental Biology and Department of Animal Biology, Faculty of Science, University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal
13Department of Biology, University of York, PO Box 373, York YO10 5YW, UK

Tóm tắt

Từ khóa


Tài liệu tham khảo

Akhverdyan, 1999, Intrapopulation autosomal polymorphism in the common vole Microtus arvalis of the Transcaucasian region, Russ. J. Genet., 35, 1452

Avise, 2000

Barraclough, 2001, Phylogenetics and speciation, Trends Ecol. Evol., 16, 391, 10.1016/S0169-5347(01)02161-9

Baskevich, 1996, On the karyological differentiation in Caucasian populations of common vole (Rodentia, Cricetidae, Microtus), Zool. Zh., 75, 297

Bensasson, 2001, Mitochondrial pseudogenes: evolution’s misplaced witnesses, Trends Ecol. Evol., 16, 314, 10.1016/S0169-5347(01)02151-6

Bilton, 1998, Mediterranean Europe as an area of endemism for small mammals rather than a source for northwards postglacial colonization, Proc. R. Soc. Lond. Ser. B, 265, 1219, 10.1098/rspb.1998.0423

Bradley, 2001, A test of the genetic species concept: cytochrome b sequences and mammals, J. Mammal., 82, 960, 10.1644/1545-1542(2001)082<0960:ATOTGS>2.0.CO;2

Brunet-Lecomte, 1990, Relations phylogénétiques et évolution des campagnols souterrains d’Europe (Terricola, Arvicolidae, Rodentia), C.R. Acad. Sci. Paris, Série II, 311, 745

Brunet-Lecomte, 1991, Morphological evolution and phylogenetic relationships of the European ground voles (Arvicolinae, Rodentia), Lethaia, 24, 45, 10.1111/j.1502-3931.1991.tb01179.x

Brunet-Lecomte, 1992, Morphological convergences versus biochemical divergences in the holarctic ground voles: Terricola and Pitymys (Arvicolidae, Rodentia), N. Jb. Geol. Paläont. Mh., 12, 721

Brunhoff, 2003, Holarctic phylogeography of the root vole (Microtus oeconomus): implications for late Quaternary biogeography of high latitudes, Mol. Ecol., 12, 957, 10.1046/j.1365-294X.2003.01796.x

Bukhnikashvili, 2002, The annotated list of mammals of Georgia, Proc. Inst. Zool. Acad. Sci. Georgia, Metsniereba, Tbilisi, 21, 319

Chaline, J., 1972. Les rongeurs du Pléistocène moyen et supérieur de France. Cahiers Paléont., CNRS, Paris, pp. 1–410

Chaline, 1987, Arvicolid data (Arvicolidae, Rodentia) and evolutionary concepts, Evol. Biol., 21, 237, 10.1007/978-1-4615-6986-2_9

Chaline, 1999, Anatomy of the arvicoline radiation (Rodentia): palaeogeographical, palaeoecological history and evolutionary data, Ann. Zool. Fenn., 36, 239

Chaline, 1988, Phylogeny of the Arvicolidae (Rodentia): biochemical and paleontological evidence, J. Mammal., 69, 22, 10.2307/1381744

Conroy, 1999, MtDNA evidence for repeated pulses of speciation within arvicoline and murid rodents, J. Mamm. Evol., 6, 221, 10.1023/A:1020561623890

Conroy, 2000, Molecular systematics of a holarctic rodent (Microtus: Muridae), J. Mammal., 81, 344, 10.1644/1545-1542(2000)081<0344:MSOAHR>2.0.CO;2

Conroy, 2000, Phylogeography of a post-glacial colonizer: Microtus longicaudus (Rodentia: Muridae), Mol. Ecol., 9, 165, 10.1046/j.1365-294x.2000.00846.x

Conroy, 2001, The phylogenetic position of southern relictual species of Microtus (Muridae: Rodentia) in North America, Mamm. Biol., 66, 332

DeBry, 1992, Biogeography of New World taiga-dwelling Microtus (Mammalia: Arvicolidae): a hypothesis test that accounts for phylogenetic uncertainty, Evolution, 46, 1347

DeWoody, 1999, A translocated mitochondrial cytochrome b pseudogene in voles (Rodentia: Microtus), J. Mol. Evol., 48, 380, 10.1007/PL00013154

Erixon, 2003, Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics, Syst. Biol., 52, 665, 10.1080/10635150390235485

Felsenstein, 1988, Phylogenies from molecular sequences—inference and reliability, Annu. Rev. Genet., 22, 521, 10.1146/annurev.ge.22.120188.002513

Filippucci, 1991, Allozyme variation and differentiation in Chionomys nivalis (Martins, 1842), Acta Theriol., 36, 47, 10.4098/AT.arch.91-2

Fumagalli, 1999, Molecular phylogeny and evolution of Sorex shrews (Soricidae: Insectivora) inferred from mitochondrial DNA sequence data, Mol. Phylogenet. Evol., 11, 222, 10.1006/mpev.1998.0568

Galleni, 1992, Karyology of the Savi pine vole, Microtus savii (De Sélys-Longchamps, 1838) (Rodentia, Arvicolidae): G-, C-, DA/DAPI-, and AluI-bands, Cytogenet. Cell Genet., 59, 290, 10.1159/000133272

Galleni, 1994, Taxonomy of Microtus savii (Rodentia, Arvicolidae) in Italy: cytogenetic and hybridization data, J. Mammal., 75, 1040, 10.2307/1382487

Garapich, 1996, A contribution to the origin of Allophaiomys (Arvicolidae, Rodentia) in Central Europe: the relationships between Mimomys and Allophaiomys from Kamyk (Poland), Acta Zool. Cracov., 39, 179

Getz, L.L., 1985. Habitats. In: Tamarin, R.H.(Ed.), Biology of New World Microtus. American Society of Mammalogists. Special Publication No. 8, pp. 286–309

Gill, 1987, Biochemical comparison in Yugoslavian rodents of the families Arvicolidae and Muridae, Z. Säugetierk., 52, 247

Golenishchev, 2003, New species of guentheri group (Rodentia, Arvicolinae, Microtus) from Iran, Russ. J. Theriol., 1, 117, 10.15298/rusjtheriol.01.2.05

Graf, 1982, Génétique biochimique, zoogéographie et taxonomie des Arvicolidae (Mammalia, Rodentia), Rev. Suisse Zool., 89, 749, 10.5962/bhl.part.82472

Gromov, 1992

Gu, 1999, Study on the morphology of sex chromosomes pairing of the synaptonemal complex in Mandarin vole (Microtus mandarinus), Acta Theriol. Sin., 19, 150

Haring, 2001, Phylogenetic analysis of Alpine voles of the Microtus multiplex complex using the mitochondrial control region, J. Zool. Syst. Evol. Res., 38, 231, 10.1046/j.1439-0469.2000.384139.x

Haynes, 2003, Phylogeography of the common vole (Microtus arvalis) with particular emphasis on the colonization of the Orkney archipelago, Mol. Ecol., 12, 951, 10.1046/j.1365-294X.2003.01795.x

Hellborg, L., 2004. Evolutionary studies of the mammalian Y chromosome. Ph.D, thesis, Uppsala University

Hendy, 1989, A framework for the quantitative study of evolutionary trees, Syst. Zool., 38, 297, 10.2307/2992396

Hoffmann, R.S., Koeppl, J.W., 1985. Zoogeography. In: Tamarin, R.H. (Ed.), Biology of New World Microtus. American Society of Mammalogists. Special Publication No. 8, pp. 84–0115

Hudson, 2002, Mathematical consequences of the genealogical species concept, Evolution, 56, 1557, 10.1111/j.0014-3820.2002.tb01467.x

Hudson, 2003, Stochasticity overrules the three-times rule: genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA, Evolution, 57, 182

Huelsenbeck, 2002, Potential applications and pitfalls of Bayesian inference of phylogeny, Syst. Biol., 51, 673, 10.1080/10635150290102366

Huelsenbeck, 2001, Bayesian inference of phylogeny and its impact on evolutionary biology, Science, 294, 2310, 10.1126/science.1065889

Hutterer, 2001, Bavarian pine vole still alive, Oryx, 35, 185

Irwin, 1991, Evolution of the cytochrome b gene of mammals, J. Mol. Evol., 32, 128, 10.1007/BF02515385

Jaarola, 2002, Phylogeography of field voles (Microtus agrestis) in Eurasia inferred from mitochondrial DNA sequences, Mol. Ecol., 11, 2613, 10.1046/j.1365-294X.2002.01639.x

Jaarola, 2004, A highly divergent mitochondrial DNA lineage of Microtus agrestis in southern Europe, Heredity, 92, 229, 10.1038/sj.hdy.6800400

Jaarola, 1995, Colonization history of north European field voles (Microtus agrestis) revealed by mitochondrial DNA, Mol. Ecol., 4, 299, 10.1111/j.1365-294X.1995.tb00223.x

Jukes, 1969, Evolution of protein molecules, 21

Kefelioğlu, 1999, The taxonomy of Microtus socialis group (Rodentia: Microtinae) in Turkey, with the description of a new species, J. Nat. Hist., 33, 289, 10.1080/002229399300425

Kocher, 1989, Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers, Proc. Natl. Acad. Sci. USA, 86, 6196, 10.1073/pnas.86.16.6196

Kratochvíl, 1974, Karyotypes and relationships of Palaearctic 54-chromosome Pitymys species (Microtidae, Rodentia), Zool. Listy, 23, 289

Kryštufek, 1999, Snow voles, genus Chionomys, of Turkey, Mammalia, 63, 323, 10.1515/mamm.1999.63.3.323

Kryštufek, 1996, The status and use of Terricola Fatio, 1867 in the taxonomy of Palaearctic pine voles’ (Pitymys) (Rodentia, Arvicolinae), Bull. Inst. R. Sci. Nat. Belg. Biol., 66, 237

Kryštufek, 2001, Redescription of Microtus irani, the species limits and a new social vole from Turkey, Bonn. Zool. Beitr., 50, 1

Leaché, 2002, Molecular systematics of the eastern fence lizard (Sceloporus undulatus): A comparison of parsimony, likelihood and Bayesian approaches, Syst. Biol., 51, 44, 10.1080/106351502753475871

Lessa, 1998, The molecular phylogenetics of tuco-tucos (genus Ctenomys, Rodentia: Octodontidae) suggests an early burst of speciation, Mol. Phylogenet. Evol., 9, 88, 10.1006/mpev.1997.0445

Lin, 2002, Pika and vole mitochondrial genomes increase support for both rodent monophyly and Glires, Gene, 294, 119, 10.1016/S0378-1119(02)00695-9

Macholán, 2001, Genetic variation and zoogeography of pine voles of the Microtus subterraneus/majori group in Europe and Asia Minor, J. Zool., 255, 31, 10.1017/S0952836901001091

Maddison, 2000

Malygin, 2003, Efficiency of reproductive isolation mechanisms in six species of common voles (Microtus, Rodentia), vol. V, 198

Martínková, 2003, The fragmented distribution range of Microtus tatricus and its evolutionary implications, Folia Zool., 52, 11

Maryama, 1981, Evolutionary rate of the mammalian karyotype, J. Theor. Biol., 90, 111, 10.1016/0022-5193(81)90125-9

Mazurok, 2001, Comparative chromosome and mitochondrial DNA analyses and phylogenetic relationships within common voles (Microtus, Arvicolidae), Chrom. Res., 9, 107, 10.1023/A:1009226918924

Megías-Nogales, 2002, Sex chromosome pairing in two Arvicolidae species: Microtus nivalis and Arvicola sapidus, Hereditas, 138, 114, 10.1034/j.1601-5223.2003.01717.x

McClellan, 2001, Estimating the influence of selection on the variable amino acid sites of the cytochrome b protein functional domains, Mol. Biol. Evol., 18, 917, 10.1093/oxfordjournals.molbev.a003892

Meier, 1996, Voles (subgenus Microtus Schrank) of Russia and adjacent territories, Proc. Zool. Inst. Russ. Acad. Sci., 232, 1

Meier, 1985, Karyological peculiarities and probable relations of common voles of the group ‘arvalis’ (Rodentia, Cricetidae, Microtus), Zool. Zh., 64, 417

Mekada, 2002, Karyotype and X–Y chromosome pairing in the Sikkim vole (Microtus (Neodon) sikimensis), J. Zool., 257, 417, 10.1017/S0952836902001024

Mezhzherin, 1995, Biochemical variation and genetic divergence in Palearctic voles (Arvicolidae): subgenus Terricola, true lemmings Lemmus Link 1795, pied lemmings Dicrostonyx Gloger 1841, steppe lemmings Lagurus Gloger 1842, mole voles Ellobius Fischer von Waldheim 1814, Genetika, 31, 788

Mezhzherin, 1993, Biochemical variation and genetic divergence in Palearctic voles (Arvicolidae): meadow voles Microtus Schrank 1798, snow voles Chionomys Miller 1908, water voles Arvicola Lacepede 1799, Genetika, 29, 28

Mirol, 2000, Multiple nuclear pseudogenes of mitochondrial cytochrome b in Ctenomys (Caviomorpha, Rodentia) with either great similarity to or high divergence from the true mitochondrial sequence, Heredity, 84, 538, 10.1046/j.1365-2540.2000.00689.x

Mitchell-Jones, 1999

Modi, 1987, Phylogenetic analyses of chromosomal banding patterns among the Nearctic Arvicolidae (Mammalia: Rodentia), Syst. Zool., 36, 109, 10.2307/2413264

Musser, 1993, Family Muridae, 510

Nadachowski, 1991, Systematics, geographic variation, and evolution of snow voles (Chionomys) based on dental characters, Acta Theriol., 36, 1, 10.4098/AT.arch.91-1

Nadachowski, 1998, Allophaiomys evolutionary stage in extant Microtus, Paludicola, 2, 91

Nadachowski, 1996, Recent Allophaiomys-like species in the Palaearctic: Pleistocene relicts or a return to an initial type?, Acta Zool. Cracov., 39, 387

Nei, 1987

Nichols, 2001, Gene trees and species trees are not the same, Trends Ecol. Evol., 16, 358, 10.1016/S0169-5347(01)02203-0

Nowak, 1999

Orlov, 1983, Karyotype homology and species phylogeny in a group of field mice (Cricetidae, Rodentia), Doklady Biol. Sci., 269, 217

Panteleyev, 1998

Posada, 1998, Modeltest: testing the model of DNA substitution, Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817

Potapov, 1999, Genetic differentiation in the voles of the tribe Arvicolini (Cricetidae, Rodentia) using DNA taxonprint and RAPD-PCR, Russ. J. Genetics, 35, 403

Rabeder, 1986, Herkunft und frühe Evolution der Gattung Microtus (Arvicolidae, Rodentia), Z. Säugetierk., 51, 350

Reed, 1999, Interaction of process partitions in phylogenetic analysis: an example from the swallowtail butterfly genus Papilio, Mol. Biol. Evol., 16, 286, 10.1093/oxfordjournals.molbev.a026110

Rekovets, 1995, Pleistocene voles (Arvicolidae) of the Ukraine, Paleont. Evolutió, 28-29, 145

Richmond, 1996, The INQUA-approved provisional Lower-Middle Pleistocene boundary

Ronquist, 2003, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180

Rosenberg, 2002, Genealogical trees, coalescent theory and the analysis of genetic polymorphisms, Nat. Rev. Genet., 3, 380, 10.1038/nrg795

Searle, 1996, Speciation in small mammals, Symp. Zool. Soc. Lond., 69, 143

Spitzenberger, 2000, Comparative morphometrics of the first lower molar in Microtus (Terricola) cf. liechtensteini of the Eastern Alps, Acta Theriol., 45, 471, 10.4098/AT.arch.00-47

Suchentrunk, 1998, On gene pool divergence of the two karyotypically distinct sibling vole species Microtus arvalis and M. rossiaemeridionalis (Arvicolidae, Rodentia), Folia Zool., 47, 103

Suzuki, 2002, Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics, Proc. Natl. Acad. Sci. USA, 99, 16138, 10.1073/pnas.212646199

Swofford, 2002

Tsekoura, 2002, Morphometric and allozyme variation in central and southern Greek populations of Microtus (Terricola) thomasi, Acta Theriol., 47, 137, 10.1007/BF03192454

Wickström, L.M., 2004. Phylogeny, phyletic coevolution and phylogeography of anoplocephaline cestodes in mammals. Ph.D. thesis, University of Helsinki, Finnish Forest Research Institute, Research Papers 918

Yang, 1994, Estimating the pattern of nucleotide substitutions, J. Mol. Evol., 39, 105, 10.1007/BF00178256

Yang, 1999, Estimation of the transition/transversion rate bias and species sampling, J. Mol. Evol., 48, 274, 10.1007/PL00006470

Yigit, 2002, On the distribution and taxonomic status of Microtus guentheri (Danford and Alston, 1880) and Microtus lydius Blackler, 1916 (Mammalia: Rodentia) in Turkey, Turk. J. Zool., 26, 197

Zagorodnyuk, 1989, Taksonomiya, rasprostranenie i morfologicheskaya izmenchivost’polevok roda Terricola vostochnoi Evropy. [Taxonomy, distribution and morphological variation of the Terricola voles in East Europe], Vestnik Zool., 5, 3

Zagorodnyuk, 1990, Vestnik Zool., 2, 26

Zakrzewski, R.J., 1985. The fossil record. In: Tamarin, R.H.(Ed.), Biology of New World Microtus. American Society of Mammalogists. Special Publication No. 8, pp. 1–51

Zheng, 2000, Late Miocene–Early Pleistocene micromammals from Wenwanggou of Lingtai, Gansu, China, Vertebrata PalAsiatica, 38, 58

Zima, 1984, Karyotypes of European mammals II, Acta Sc. Nat. Brno, 18, 1