Molecular characterisation and phylogenetic analysis of Chronic bee paralysis virus, a honey bee virus

Virus Research - Tập 132 - Trang 59-68 - 2008
Violaine Olivier1, Philippe Blanchard1, Soraya Chaouch1, Perrine Lallemand1, Frank Schurr1, Olivier Celle1, Eric Dubois1, Noël Tordo2, Richard Thiéry1, Rémi Houlgatte3, Magali Ribière1
1AFSSA Sophia-Antipolis (Agence Française de Sécurité Sanitaire des Aliments), 105 route des Chappes, BP 111, 06 902 Sophia-Antipolis, France
2Institut Pasteur, Department of Virology, Unit “Strategies Antivirales”, 25, rue du Dr. Roux, 75 724 Paris cedex 15, France
3Institut du Thorax, INSERM U533, Faculté de Médecine, 1 rue Gaston Veil, BP 53508, 44 035 Nantes cedex 1, France

Tài liệu tham khảo

Allen, 1996, The incidence and world distribution of honey bee viruses, Bee World, 77, 141, 10.1080/0005772X.1996.11099306 Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389 Bailey, 1976 Bailey, 1980, Small virus-like particles in honey bees associated with chronic paralysis virus and with a previously undescribed disease, J. Gen. Virol., 46, 149, 10.1099/0022-1317-46-1-149 Bailey, 1983, Honeybee paralysis: its natural spread and its diminished incidence in England and Wales, J. Apic. Res., 22, 191, 10.1080/00218839.1983.11100586 Bailey, 1963, Two viruses from adult honey bees (Apis mellifera Linnaeus), Virology, 21, 390, 10.1016/0042-6822(63)90200-9 Bailey, 1968, The purification and properties of chronic bee-paralysis virus, J. Gen. Virol., 2, 251, 10.1099/0022-1317-2-2-251 Bailey, 1973, The pathogenicity of Nodamura virus for insects, Nature, 241, 545, 10.1038/241545a0 Bakonyi, 2002, Detection of acute bee paralysis virus by RT-PCR in honey bee and Varroa destructor field samples: rapid screening of representative Hungarian apiaries, Apidologie, 33, 63, 10.1051/apido:2001004 Ball, 1999, An introduction to viruses and techniques for their identification and caracterisation, Options Mediterannéennes Ball, 1999, Paralysis, Options Mediterannéennes Ball, 1991 Ball, 1998 Ball, 1985, Relationships between the multiplication of chronic bee-paralysis virus and its associate particle, J. Gen. Virol., 66, 1423, 10.1099/0022-1317-66-7-1423 Blanchard, 2007, Evaluation of a real-time two-step RT-PCR assay for quantitation of Chronic bee paralysis virus (CBPV) genome in experimentally-infected bee tissues and in life stages of a symptomatic colony, J. Virol. Methods, 141, 7, 10.1016/j.jviromet.2006.11.021 Blanchard, P., Olivier, V., Iscache, A.L., et al., 2007b. Improvement of RT-PCR diagnosis for the detection of Chronic bee paralysis virus (CBPV) required by the description of genomic variability on CBPV French isolate. J. Invert. Pathol., doi:10.1016/j.jip.2007.07.003, in press. Bonami, 2005, White tail disease of the giant freshwater prawn, Macrobrachium rosenbergii: separation of the associated virions and characterization of MrNV as a new type of nodavirus, J. Fish Dis., 28, 23, 10.1111/j.1365-2761.2004.00595.x Brierley, 1992, Mutational analysis of the “slippery-sequence” component of a coronavirus ribosomal frameshifting signal, J. Mol. Biol., 227, 463, 10.1016/0022-2836(92)90901-U Dasgupta, 1984, Primary and secondary structure of black beetle virus RNA2, the genomic messenger for BBV coat protein precursor, Nucleic Acids Res., 12, 7215, 10.1093/nar/12.18.7215 Fauquet, 2005 Giauffret, 1967, Etude histopathologique de la maladie noire de l’abeille, Bull. Apic. X, 133 Giauffret, 1966, Etude histologique du tissu nerveux de l’abeille atteinte de maladie noire, Bull. Apic. IX, 221 Giauffret, 1966, Etude virologique de quelques cas de maladie noire de l’abeille en France, Recl. Méd. Vét. CXLII, 819 Giauffret, 1970, Ultrastructure des cellules d’abeilles infectées par le virus de la paralysie-maladie noire. Etude des inclusions cellulaires, Bull. Apic. XIII, 115 Giedroc, 2000, Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting, J. Mol. Biol., 298, 167, 10.1006/jmbi.2000.3668 Grabensteiner, 2001, Sacbrood virus of the honeybee (Apis mellifera): rapid identification and phylogenetic analysis using reverse transcription-PCR, Clin. Diagn. Lab. Immunol., 8, 93, 10.1128/CDLI.8.1.93-104.2001 Guarino, 1984, Sequence of the black beetle virus subgenomic RNA and its location in the viral genome, Virology, 139, 199, 10.1016/0042-6822(84)90342-8 Johnson, 2000, Characterization and construction of functional cDNA clones of Pariacoto virus, the first Alphanodavirus isolated outside Australasia, J. Virol., 74, 5123, 10.1128/JVI.74.11.5123-5132.2000 Koonin, 1993, Evolution and taxonomy of positive-strand RNA viruses: implication of comparative analysis of amino acid sequences, Crit. Rev. Biochem. Mol. Biol., 28, 375, 10.3109/10409239309078440 Lee, 1965, Chronic bee paralysis virus in the nerve ganglia of the adult honey bee, J. Invert. Pathol., 7, 170, 10.1016/0022-2011(65)90032-7 Liu, 2005, DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences, Bioinformatics, 21, 671, 10.1093/bioinformatics/bth437 Olivier, 2006, Taxonomy of Apis mellifera viruses, Virologie, 10, 267 Overton, 1982, Relationships between the RNA components of chronic bee-paralysis virus and those of chronic bee-paralysis virus associate, J. Gen. Virol., 63, 171, 10.1099/0022-1317-63-1-171 Page, 1996, TreeView: an application to display phylogenetic trees on personal computers, Comput. Appl. Biosci., 12, 357 Ribière, 2000, Detection of chronic bee paralysis virus infection: application to a field survey, Apidologie, 31, 567, 10.1051/apido:2000147 Ribière, 2002, Molecular diagnosis of chronic bee paralysis virus infection, Apidologie, 33, 339, 10.1051/apido:2002020 Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406 Sommerset, 2004, Complete sequence of RNA1 and subgenomic RNA3 of Atlantic halibut nodavirus (AHNV), Dis. Aquat. Organ., 58, 117, 10.3354/dao058117 Sri Widada, 2004, Characteristics of the monocistronic genome of extra small virus, a virus-like particle associated with Macrobrachium rosenbergii nodavirus: possible candidate for a new species of satellite virus, J. Gen. Virol., 85, 643, 10.1099/vir.0.79777-0 Tan, 2001, Determination of the complete nucleotide sequences of RNA1 and RNA2 from greasy grouper (Epinephelus tauvina) nervous necrosis virus, Singapore strain, J. Gen. Virol., 82, 647, 10.1099/0022-1317-82-3-647 Tentcheva, 2004, Prevalence and seasonal variations of six bee viruses in Apis mellifera L. and Varroa destructor mite populations in France, Appl. Environ. Microbiol., 70, 7185, 10.1128/AEM.70.12.7185-7191.2004 Thompson, 1997, The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res., 25, 4876, 10.1093/nar/25.24.4876 Tompkins, 1991 Watson, 1998, A small RNA resembling the beet western yellows luteovirus ST9-associated RNA is a component of the California carrot motley dwarf complex, Phytopathology, 88, 164, 10.1094/PHYTO.1998.88.2.164 Weinstock, 2006, Insights into social insects from the genome of the honeybee Apis mellifera, Nature, 443, 931, 10.1038/nature05260 Yokoi, 2003, The nucleotide sequence and genome organization of Sclerophthora macrospora virus A, Virology, 311, 394, 10.1016/S0042-6822(03)00183-1