Molecular and structural-biological analysis of Nicotiana plumbaginifolia mutants for identification of the site on their β-tubulins of interaction with dinitroanilines and phosphorothioamides
Tóm tắt
The identification of the location of a point mutation on β-tubulin molecules of amiprophosmethyland trifluralin-resistant Nicotiana plumbaginifolia lines are described in this work. It was shown that in the first case, this mutation is related with the substitution of serine residue for proline in position 248; in the second case, with the substitution of phenylalanine for serine in position 317 of the β-tubulin’s amino acid sequence. Three-dimensional models of the β-tubulin molecule from Chlamydomonas with the well-known location of mutations determining dinitroaniline- and phosphorothioamides resistance (the substitution of lysine residue for methionine in position 350), and β-tubulin from Nicotiana plumbagnifolia have been reconstructed. On the basis of the analysis of the interaction site for dinitroanilines and phosphorothioamides located on the Chlamydomonas β-tubulin’s molecule it was concluded that the revealed mutations on Nicotiana plumbaginifolia β-tubulin are affected by the residues of the amino acids, participating in the formation of this site.
Tài liệu tham khảo
citation_journal_title=Fiziol. Rast.; citation_title=Resistance pf Plants to Herbicides with Antimicrotubular Mechanism of Action: From Natural Mutants to Gene Transfer; citation_author=A.I. Yemets, Ya.B. Blume; citation_volume=46; citation_publication_date=1999; citation_pages=899-907; citation_id=CR1
citation_journal_title=Pharm. Ther.; citation_title=The Biochemistry of Compounds with Anti-Microtubule Activity in Plant Cells; citation_author=L.C. Morejohn, D.E. Fosket; citation_volume=51; citation_publication_date=1991; citation_pages=217-230; citation_doi=10.1016/0163-7258(91)90078-Z; citation_id=CR2
citation_journal_title=Weed Res.; citation_title=Mitotic Disrupter Herbicides; citation_author=K.C. Vaughn, L.P. Lehnen; citation_volume=39; citation_publication_date=1991; citation_pages=450-457; citation_id=CR3
citation_journal_title=Nature; citation_title=Herbicide Resistance Caused by Spontaneous Mutation of the Cytoskeletal Protein Tubulin; citation_author=R.G. Anthony, T.R. Waldin, J.A. Ray, S.W.J. Bright, P.J. Hussey; citation_volume=393; citation_publication_date=1998; citation_pages=260-263; citation_doi=10.1038/30484; citation_id=CR4
citation_journal_title=Planta; citation_title=Oryzalin, a Dinitroaniline Herbicide, Binds to Plant Tubulin and Inhibits Microtubule Polymerization in Vitro; citation_author=L.C. Morejohn, T.E. Bureau, J. Molé-Bajer, A.S. Bajer, D.E. Fosket; citation_volume=172; citation_publication_date=1987; citation_pages=252-264; citation_doi=10.1007/BF00394595; citation_id=CR5
citation_title=Modified Tubulin Genes as Selectable Markets for Plant Transformation; citation_inbook_title=The Plant Cytoskeleton: Key Tool for Agro-Biotechnology; citation_publication_date=2008; citation_pages=435-454; citation_id=CR6; citation_author=A. Yemets; citation_author=W.V. Baird; citation_author=Ya.B. Blume; citation_publisher=Springer-Verlag
citation_journal_title=Eleusine indica, Plant Cell; citation_title=β-Tubulins Missense Mutations Correlate with Antimicrotubule Drug Resistance; citation_author=E. Yamamoto, L. Zeng, W.V. Biard; citation_volume=10; citation_publication_date=1998; citation_pages=297-308; citation_id=CR7
citation_journal_title=J. Heredity; citation_title=Genetic Basis of Dinitroaniline Herbicide Resistance in a Highly-Resistant Biotype of Goosegrass (Eleusine Indica); citation_author=L. Zeng, W.V. Baird; citation_volume=88; citation_publication_date=1997; citation_pages=427-432; citation_id=CR8
citation_journal_title=Am. J. Bot.; citation_title=Inheritance of Resistance To Antimicrotubule Dinitroaniline Herbicides An “Intermediate” Resistant Biotype of Eleusine indica (Poaceae); citation_author=L. Zeng, W.V. Baird; citation_volume=86; citation_publication_date=1999; citation_pages=940-947; citation_doi=10.2307/2656610; citation_id=CR9
citation_journal_title=Plant Physiol.; citation_title=Molecular Bases for Sensitivity to Tubulin-Binding Herbicides in Green Foxtail; citation_author=C. Delye, Y. Menchari, S. Michel, H. Darmency; citation_volume=136; citation_publication_date=2004; citation_pages=3920-3932; citation_doi=10.1104/pp.103.037432; citation_id=CR10
citation_journal_title=Plant Cell; citation_title=Missense Mutations at Lysine 350 in β-Tubulin Confer Altered Sensitivity to Microtubule Inhibitors in Chlamydomonas; citation_author=V.D. Lee, B. Huang; citation_volume=2; citation_publication_date=1990; citation_pages=1051-1057; citation_doi=10.1105/tpc.2.11.1051; citation_id=CR11
citation_journal_title=Int. Turfgrass Soc. Res. J.; citation_title=Biology and Molecular Analysis of Dinitroaniline-Resistant Poa annua, L.; citation_author=D.B. Lowe, G.A. Swire-Clark, L.B. McCarty, T. Whitewell, W.V. Baird; citation_volume=9; citation_publication_date=2001; citation_pages=1019-1025; citation_id=CR12
citation_journal_title=Cell Biol. Int.; citation_title=Plant Mutants and Somatic Hybrids with Resistance to Trifluralin; citation_author=A.I. Yemets, N.M. Strashnyuk, Ya.B. Blume; citation_volume=21; citation_issue=12; citation_publication_date=1997; citation_pages=912-914; citation_id=CR13
citation_journal_title=Theor. Appl. Genet.; citation_title=Alteration of β-Tubulin in Nicotiana plumbaginifolia Confers Resistance to Amiprophosmethyl; citation_author=Ya.B. Blume, N.M. Strashnyuk, A.P. Smertenko, V.G. Solodushko, V.A. Sidorov, Yu.Yu. Gleba; citation_volume=97; citation_publication_date=1998; citation_pages=464-472; citation_doi=10.1007/s001220050918; citation_id=CR14
citation_journal_title=Fiziol. Rast.; citation_title=Relationship between the Sensitivity of Eleusine indica to Trifluralin and Amiprophosmethyl and Characteristics of Interaction of These Compounds with Tubulin; citation_author=A.Yu. Nyporko, A.I. Yemets, L.A. Klimkina, Ya.B. Blume; citation_volume=49; citation_publication_date=2002; citation_pages=459-466; citation_id=CR15
citation_journal_title=Cell Biol. Int.; citation_title=Structural Modeling of the Interaction of Plant β-Tubulin with Dinitroaniline and Phosphoroamidate Herbicides; citation_author=Ya.B. Blume, A.Yu. Nyporko, A.I. Yemets, W.V. Baird; citation_volume=27; citation_publication_date=2003; citation_pages=171-174; citation_doi=10.1016/S1065-6995(02)00298-6; citation_id=CR16
citation_title=Current Protocols in Molecular Biology; citation_publication_date=1991; citation_id=CR17; citation_author=F. Ausubel; citation_author=R. Brent; citation_author=R. Kingston; citation_author=D. Moore; citation_author=J. Seidman; citation_author=J. Smith; citation_author=K. Struhl; citation_publisher=Wiley
citation_title=Molecular Cloning: A Laboratory Manual; citation_publication_date=1982; citation_id=CR18; citation_author=T. Maniatis; citation_author=E.F. Fritch; citation_author=J. Sambrook; citation_publisher=Cold Spring Harbor Lab. Press
citation_journal_title=Plant. Mol. Biol.; citation_title=Molecular Characterization of Four β-Tubulin Genes from Dinitroaniline Susceptible and Resistant Biotypes of Eleusine indica
; citation_author=E. Yamamoto, W.V. Baird; citation_volume=39; citation_publication_date=1999; citation_pages=45-61; citation_doi=10.1023/A:1006108412801; citation_id=CR19
citation_journal_title=J. Mol. Biol.; citation_title=Studies on Transformation of Escherichia coli with Plasmids; citation_author=D. Hanahan; citation_volume=166; citation_publication_date=1983; citation_pages=557-580; citation_doi=10.1016/S0022-2836(83)80284-8; citation_id=CR20
citation_journal_title=Nucleic Acids Res.; citation_title=The SWISS-PROT Protein Sequence Data Bank and Its Supplement TrEMBL in 2000; citation_author=A. Bairoch, R. Apweiler; citation_volume=28; citation_publication_date=2000; citation_pages=45-48; citation_doi=10.1093/nar/28.1.45; citation_id=CR21
citation_journal_title=Nucleic Acids Res.; citation_title=The ClustalX Windows Interface: Flexible Strategies for Multiple Sequence Alignment Aided by Quality Analysis Tools; citation_author=J.D. Thompson, T.J. Gibson, F. Plewniak; citation_volume=24; citation_publication_date=1997; citation_pages=4876-4882; citation_doi=10.1093/nar/25.24.4876; citation_id=CR22
citation_journal_title=Biopolim. Kletka; citation_title=Comparative Analysis of Secondary Structure of Tubulins and FtsZ Proteins; citation_author=A.Yu. Nyporko, Ya.B. Blume; citation_volume=17; citation_publication_date=2001; citation_pages=61-69; citation_id=CR23
Nyporko, A.Yu. and Blume, Ya.B., Simulation and Analysis of the Spatial Structure of β-Tubulin of Higher Plants, Dop. NAN Ukrainy, 2002, no. 1, pp. 141–145.
citation_journal_title=Immunol. News; citation_title=Molecular Modelling of Proteins; citation_author=N. Guex, M.C. Peitsch; citation_volume=6; citation_publication_date=1999; citation_pages=132-134; citation_id=CR25
citation_journal_title=Electrophoresis; citation_title=SWISS-MODEL and the Swiss-PdbViewer: An Environment for Comparative Protein Modeling; citation_author=N. Guex, M.C. Peitsch; citation_volume=18; citation_publication_date=1997; citation_pages=2714-2723; citation_doi=10.1002/elps.1150181505; citation_id=CR26
citation_journal_title=J. Mol. Model.; citation_title=GROMACS 3.0: A Package for Molecular Simulation and Trajectory Analysis; citation_author=E. Lindahl, B. Hess, D. Spoel; citation_volume=7; citation_publication_date=2001; citation_pages=306-317; citation_id=CR27
citation_journal_title=Cell Biol. Int.; citation_title=In Situ Hybridization of Beta-Tubulin Probes to Higher Plant Chromosomes; citation_author=L.V. Malysheva, Ya.B. Blume, Yu.Yu. Gleba, A. Mouras; citation_volume=21; citation_publication_date=1997; citation_pages=912-914; citation_id=CR28
citation_journal_title=Weed Res.; citation_title=Molecular Characterization of the Tubulin-Related Gene Families in Herbicide-Resistant and -Susceptible Goosegrass (Eleusine indica); citation_author=K.S. Mysore, W.V. Baird; citation_volume=43; citation_publication_date=1995; citation_pages=28-33; citation_id=CR29
citation_journal_title=Physiol. Plant.; citation_title=Distinct Tubulin Genes Are Differentially Expressed during Barley Grain Development; citation_author=V. Radchuk, N. Sreenivasulu, Ya. Blume, W. Weschke; citation_volume=131; citation_publication_date=2007; citation_pages=571-580; citation_doi=10.1111/j.1399-3054.2007.00976.x; citation_id=CR30
citation_journal_title=Plant Cell; citation_title=The Small Genome of Arabidopsis Contains at Least Nine Expressed β-Tubulin Genes; citation_author=D.P. Snustad, N.A. Haas, S.D. Kopczak, C.D. Silflow; citation_volume=4; citation_publication_date=1992; citation_pages=549-556; citation_doi=10.1105/tpc.4.5.549; citation_id=CR31
citation_title=Spatial Distribution of Tubulin Mutations Conferring Resistance to Antimicrotubular Compounds; citation_inbook_title=The Plant Cytoskeleton: Key Tool for Agro-Biotechnology; citation_publication_date=2008; citation_pages=397-417; citation_id=CR32; citation_author=A.Yu. Nyporko; citation_author=Ya.B. Blume; citation_publisher=Springer-Verlag
citation_journal_title=Trends Plant Sci.; citation_title=Dinitroaniline Herbicide Resistance and the Microtubule Cytoskeleton; citation_author=R.G. Anthony, P.J. Hussey; citation_volume=4; citation_publication_date=1999; citation_pages=112-116; citation_doi=10.1016/S1360-1385(99)01378-3; citation_id=CR33
citation_journal_title=Plant Physiol.; citation_title=A Dinitroaniline-Resistant Mutant of Eleusine indica Exhibits Cross-Resistance and Supersensitivity to Antimicrotubule Herbicides and Drugs; citation_author=K.C. Vaughn, M.D. Marks, D.P. Weeks; citation_volume=83; citation_publication_date=1987; citation_pages=956-964; citation_doi=10.1104/pp.83.4.956; citation_id=CR34
citation_journal_title=Tsitol. Genet.; citation_title=Structural-Biological Characteristic of Tubulin Interaction with Dinitroanilines; citation_author=A.Yu. Nyporko, A.I. Yemets, V.N. Britsun, M.O. Lozinskii, Ya.B. Blume; citation_volume=43; citation_issue=4; citation_publication_date=2009; citation_pages=56-70; citation_id=CR35
