Microbiome dataset of eukaryotic and fungal communities in the bulk soil and root of wild Brassica napus in South Korea

Data in Brief - Tập 43 - Trang 108457 - 2022
Seong-Jun Chun1
1LMO Team, National Institute of Ecology, 1210 Geumgang-ro, Maseo-myeon, Seocheon 33657, Republic of Korea

Tài liệu tham khảo

Kim, 2020, Monitoring living modified canola using an efficient multiplex PCR assay in natural environments in South Korea, Appl. Sci., 10, 7721, 10.3390/app10217721 Stoeck, 2010, Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water, Mol. Ecol., 19, 21, 10.1111/j.1365-294X.2009.04480.x Toju, 2012, High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples, PloS ONE, 7, e40863, 10.1371/journal.pone.0040863 Bourlat, 2016, 197 Callahan, 2016, DADA2: high-resolution sample inference from illumina amplicon data, Nat. Methods, 13, 581, 10.1038/nmeth.3869 Quast, 2012, The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucleic Acids Res., 41, D590, 10.1093/nar/gks1219 Abarenkov, 2021, UNITE general FASTA release for Fungi 2. Version 10.05.2021, UNITE Community J. Oksanen, F. Guillaume Blanchet, M. Friendly, R. Kindt, P. Legendre, D. McGlinn, P.R. Minchin, R.B. O'Hara, G.L. Simpson, P. Solymos, M. Henry H. Stevens, E. Szoecs, H. Wagner (2019). vegan: community ecology package. R package version 2.5-5. https://CRAN.R-project.org/package=vegan.