Marker-assisted selection to introgress rice QTLs controlling root traits into an Indian upland rice variety

Bouchez A, Hospital F, Causse M, Gallais A, Charcosset A (2002) Marker-assisted introgression of favourable alleles at quantitative trait loci between maize elite line. Genetics 162:1945–1959

Champoux MC, Wang G, Sarkarung S, Mackill DJ, O’Toole JC, Huang N, McCouch SR (1995) Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor Appl Genet 90:969–981

Courtois B, Chaitep W, Moolsri S, Sinha PK, Trebuil G, Yadav R (1996) Drought resistance and germplasm improvement. On-going research in the Upland rice research consortium. In: Piggin C, Courtois B, Schmit V (eds) Upland rice research in Partnership IRRI, Los Baños, IRRI Discussion paper Series 16:154–175

Hemamalini GS, Shashidhar HE, Hittalmani S (2000) Molecular marker assisted tagging of morphological and physiological traits under two contrasting moisture regimens at peak vegetative stage in rice (Oryza sativa L). Euphytica 112:69–78

Hospital F, Charcosset A (1997) Marker-assisted introgression of quantitative trait loci. Genetics 147:1469–1485

Kamoshita A, Zhang J, Siopongco J, Sarkarung S, Nguyen HT, Wade L (2002) Effects of phenotyping environment on identification of Quantitative trait loci for rice root morphology under anaerobic conditions. Crop Sci 42:255–265

Lilley JM, Ludlow MM (1996) Expression of osmotic adjustment and dehydration tolerance in 61 diverse rice lines. Field Crops Res 48:185–197

Lilley JM, Ludlow MM, McCouch SR, O’Toole JC (1996) Locating QTL for osmotic adjustment and dehydration tolerance in rice. J Exp Bot 47:1427–1436

Lorieux M, Petrov M, Huang N,Guiderdoni E, Ghesquiere A (1996) Aroma in rice: Genetic analysis of a quantitative trait. Theor Appl Genet 93:1145–1151

Price AH, Tomos AD (1997) Genetic dissection of root growth in rice. II Mapping quantitative trait loci using molecular markers. Theor Appl Genet 95:143–152

Price AH, Steele KA, Moore BJ, Barraclough PB, Clark LJ (2000) A combined RFLP and AFLP linkage map of upland rice (Oryza sativa L) used to identify QTLs for root penetration ability. Theor Appl Genet 100:49–56

Price AH, Steele KA, Moore BJ, Jones RGW (2002a) Upland rice grown in soil-filled chambers and exposed to contrasting water-deficit regimes: II Mapping QTL for root morphology and distribution. Field Crops Res 76:25–43

Price AH, Cairns JE, Horton P, Jones HG, Griffiths H (2002b) Linking drought-resistance mechanisms to drought avoidance in upland rice using a QTL approach: progress and new opportunities to integrate stomatal and mesophyll responses. J Exp Bot 53:989–1004

Reyna N, Sneller CH (2001) Evaluation of marker-assisted introgression of yield QTL alleles into adapted soybean. Crop Sci 41:1317–1321

Ribaut J-M, Jiang C, Hoisington D (2002) Simulation experiments on efficiencies of gene introgression by backcrossing. Crop Sci 42:557–565

Schmierer DA, Kandemir N, Kudrna DA, Jones BL, Ullrich SE, Kleinhofs A (2004) Molecular marker-assisted selection for enhanced yield in malting barley. Mol Breed 14:463–473

Servin B, Martin OC, Mezard M, Hospital F (2004) Toward a theory of marker-assisted gene pyramiding. Genetics 168:513–523

Shen L, Courtois B, McNally KL, Robin S, Li Z (2001) Evaluation of near-isogenic lines of rice introgressed with QTLs for root depth through marker-aided selection. Theor Appl Genet 103:427–437

Steele KA, Edwards G, Zhu J, Witcombe JR (2004) Marker-evaluated selection in rice: shifts in allele frequency among bulks selected in contrasting agricultural environments identify genomic regions of importance to rice adaptation and breeding. Theor Appl Genet 109:1247–1260

Venuprasad R, Shashidhar HE, Hittalmani S, Hemamalini GS (2002) Tagging quantitative trait loci associated with grain yield and root morphological traits in rice (Oryza sativa L) under contrasting moisture regimes. Euphytica 128:293–300

Witcombe JR, Petre R, Jones S, Joshi A (1999) Farmer Participatory crop improvement IV The spread and impact of a rice variety identified by participatory varietal selection. Expl Agric 35:471–487

Yadav R, Courtois B, Huang N, McLaren G (1997) Mapping genes controlling root morphology and root distribution on a double-haploid population of rice. Theor Appl Genet 94:619–632

Yan JQ, Zhu J, He CX, Benmoussa M, Wu P (1998) Quantitative trait loci analysis for the developmental behavior of tiller number in rice (Oryza sativa L). Theor Appl Genet 97:267–274

Yoshida S, Hasegawa S (1982) The rice root system: its development and function. In: Drought resistance in crops with emphasis on rice, International Rice Research Institute, Los Banos, Laguna, pp 97–114

Zhang J, Chandra Babu R, Pantuwan G, Kamoshita A, Blum A, Wade L, Sarkarung S, O’Toole JC, Nguyen HT (1999) Molecular dissection of drought tolerance in rice: from physiomorphological traits to field performance. In: Ito O, O’Toole J, Hardy B (eds) Genetic improvement of rice for water-limited environments. Proceedings of the workshop on genetic improvement of rice for water-limited environments, 1–3 December 1998, Los Banos,. Los Banos Philippines:International Rice Research Institute, pp 307–317