Identification of differentially expressed ovarian genes during primary and early secondary oocyte growth in coho salmon, Oncorhynchus kisutch

Tyler CR, Sumpter JP: Oocyte growth and development in teleosts. Rev Fish Biol Fish. 1996, 6: 287-318. 10.1007/BF00122584.

Patiño R, Sullivan CV: Ovarian follicle growth, maturation, and ovulation in teleost fish. Fish Physiol Biochem. 2002, 26: 57-70. 10.1023/A:1023311613987.

Wallace RA, Selman K: Cellular and dynamic aspects of oocyte growth in teleosts. Am Zool. 1981, 21: 325-343.

Wallace RA, Selman K: Ultrastructural aspects of oogenesis and oocyte growth in fish and amphibians. J Electron Microsc Tech. 1990, 16: 175-201. 10.1002/jemt.1060160302.

Pelegri F: Maternal factors in zebrafish development. Dev Dyn. 2003, 228: 535-554. 10.1002/dvdy.10390.

Song JL, Wessel GM: How to make an egg: transcriptional regulation in oocytes. Differentiation. 2005, 73: 1-17. 10.1111/j.1432-0436.2005.07301005.x.

Wessel GM, Brooks JM, Green E, Haley S, Voronina E, Wong J, Zaydfudim V, Conner S: The biology of cortical granules. Int Rev Cytol. 2001, 209: 117-206.

Zeng S, Gong Z: Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Gene. 2002, 294: 45-53. 10.1016/S0378-1119(02)00791-6.

Li Y, Chia JM, Bartfai R, Christoffels A, Yue GH, Ding K, Ho MY, Hill JA, Stupka E, Orban L: Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools. Comp Funct Genom. 2004, 5: 403-418. 10.1002/cfg.418.

Rise ML, von Schalburg KR, Brown GD, Mawer MA, Devlin RH, Kuipers N, Busby M, Beetz-Sargent M, Alberto R, Gibbs AR, Hunt P, Shukin R, Zeznik JA, Nelson C, Jones SRM, Smailus DE, Jones SJM, Schein JE, Marra MA, Butterfield YSN, Stott JM, Ng SHS, Davidson WS, Koop BF: Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Res. 2004, 14: 478-490. 10.1101/gr.1687304.

von Schalburg KR, Rise ML, Brown GD, Davidson WS, Koop BF: A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary. Biol Reprod. 2005, 72: 687-699. 10.1095/biolreprod.104.034967.

Govoroun M, Le Gac F, Guiguen Y: Generation of a large scale repertoire of expressed sequence tags (ESTs) from normalized rainbow trout cDNA libraries. BMC Genom. 2006, 7: 196-10.1186/1471-2164-7-196.

Knoll-Gellida A, André M, Gattegno T, Forgue J, Admon A, Babin PJ: Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals. BMC Genom. 2006, 7: 46-10.1186/1471-2164-7-46.

Kanamori A: Systematic identification of genes expressed during early oogenesis in medaka. Mol Reprod Dev. 2000, 55: 31-36. 10.1002/(SICI)1098-2795(200001)55:1<31::AID-MRD5>3.0.CO;2-7.

Baron D, Houlgatte R, Fostier A, Guiguen Y: Large-scale temporal gene expression profiling during gonadal differentiation and early gametogenesis in rainbow trout. Biol Reprod. 2005, 73: 959-966. 10.1095/biolreprod.105.041830.

Wen C, Zhang Z, Ma W, Xu M, Wen Z, Peng J: Genome-wide identification of female-enriched genes in zebrafish. Dev Dynam. 2005, 232: 171-179. 10.1002/dvdy.20210.

Bobe J, Nguyen T, Jalabert B: Targeted gene expression profiling in the rainbow trout (Oncorhynchus mykiss) ovary during maturational competence acquisition and oocyte maturation. Biol Reprod. 2004, 71: 73-82. 10.1095/biolreprod.103.025205.

Ge W: Intrafollicular paracrine communication in the zebrafish ovary: the state of the art of an emerging model for the study of vertebrate folliculogenesis. Mol Cell Endocrinol. 2005, 237: 1-10. 10.1016/j.mce.2005.03.012.

Modig C, Modesto T, Canario A, Cerdà J, von Hofsten J, Olsson P-E: Molecular characterization and expression pattern of zona pellucida proteins in gilthead seabream (Sparus aurata). Biol Reprod. 2006, 75: 717-725. 10.1095/biolreprod.106.050757.

Perazzolo LM, Coward K, Davail B, Normand E, Tyler CR, Pakdel F, Schneider WJ, Le Menn F: Expression and localization of messenger ribonucleic acid for the vitellogenin receptor in ovarian follicles throughout oogenesis in the rainbow trout, Oncorhynchus mykiss. Biol Reprod. 1999, 60: 1057-1068. 10.1095/biolreprod60.5.1057.

Campbell B, Dickey J, Beckman B, Young G, Pierce A, Fukada H, Swanson P: Previtellogenic oocyte growth in salmon: relationships among body growth, plasma insulin-like growth factor-1, estradiol-17beta, follicle-stimulating hormone and expression of ovarian genes for insulin-like growth factors, steroidogenic-acute regulatory protein and receptors for gonadotropins, growth hormone, and somatolactin. Biol Reprod. 2006, 75: 34-44. 10.1095/biolreprod.105.049494.

Huang X, Madan A: CAP3: a DNA sequence assembly program. Genome Res. 1999, 9: 868-877. 10.1101/gr.9.9.868.

The Gene Ontology Consortium: Gene ontology: tool for the unification of biology. Nat Genet. 2000, 25: 25-29. 10.1038/75556.

Spargo SC, Hope RM: Evolution and nomenclature of the zona pellucida gene family. Biol Reprod. 2003, 68: 358-362. 10.1095/biolreprod.102.008086.

Goetz FW, Iliev DB, McCauley LAR, Liarte CQ, Tort LB, Planas JV, MacKenzie S: Analysis of genes isolated from lipopolysaccharide-stimulated rainbow trout (Oncorhynchus mykiss) macrophages. Mol Immunol. 2004, 41: 1199-1210. 10.1016/j.molimm.2004.06.005.

Luckenbach JA, Early LW, Rowe AH, Borski RJ, Daniels HV, Godwin J: Aromatase cytochrome P450: cloning, intron variation, and ontogeny of gene expression in southern flounder (Paralichthys lethostigma). J Exp Zoolog A Comp Exp Biol. 2005, 303 (8): 643-656. 10.1002/jez.a.198.

Hake LE, Richter JD: Translational regulation of maternal mRNA. Biochem Biophys Acta. 1997, 1332: M31-M38.

Duranthon V, Renard J-P: Storage and functional recovery of molecules in oocytes. Biology and Pathology of the Oocyte, Its Role in Fertility and Reproductive Medicine. Edited by: Trounson AO, Gosden RG. 2003, Cambridge, UK: Cambridge University Press, 81-112.

Luckenbach JA, Goetz FW, Swanson P: Expressed sequence tags (ESTs) of follicle/interstitial cell enriched ovarian tissue from previtellogenic coho salmon. Cybium.

Goetz FW, McCauley L, Goetz GW, Norberg B: Using global genome approaches to address problems in cod mariculture. ICES J Mar Sci. 2006, 63: 393-399. 10.1016/j.icesjms.2005.10.006.

Chang YS, Hsu CC, Wang SC, Tsao CC, Huang FL: Molecular cloning, structural analysis, and expression of carp ZP2 gene. Mol Reprod Dev. 1997, 46: 258-267. 10.1002/(SICI)1098-2795(199703)46:3<258::AID-MRD4>3.0.CO;2-O.

Kusakabe M, Nakamura I, Young G: 11β-hydroxysteroid dehydrogenase complementary deoxyribonucleic acid in rainbow trout: cloning, sites of expression, and seasonal changes in gonads. Endocrinology. 2003, 144: 2534-2545. 10.1210/en.2002-220446.

Agulleiro MJ, André M, Morais S, Cerdà J, Babin PJ: High transcript level of fatty acid-binding protein 11 but not of very low-density lipoprotein receptor is correlated to ovarian follicle atresia in a teleost fish (Solea senegalensis). Biol Reprod. 2007, 77: 504-516. 10.1095/biolreprod.107.061598.

Mittelholzer C, Andersson E, Consten D, Hirai T, Nagahama Y, Norberg B: 20β-hydroxysteroid dehydrogenase and CYP19A1 are differentially expressed during maturation in Atlantic cod (Gadus morhua). J Mol Endocrinol. 2007, 39: 319-328. 10.1677/JME-07-0070.

Liang L, Soyal SM, Dean J: FIGα, a germ cell specific transcription factor involved in the coordinate expression of the zona pellucida genes. Development. 1997, 124: 4939-4947.

Onichtchouk D, Aduroja K, Belting H-G, Gnügge L, Driever W: Transgene driving GFP expression from the promoter of the zona pellucida gene zpc is expressed in oocytes and provides an early marker for gonad differentiation in zebrafish. Dev Dyn. 2003, 228: 393-404. 10.1002/dvdy.10392.

Prat F, Coward K, Sumpter JP, Tyler CR: Molecular characterization and expression of two ovarian lipoprotein receptors in the rainbow trout, Oncorhynchus mykiss. Biol Reprod. 1998, 58: 1146-1153. 10.1095/biolreprod58.5.1146.

Li A, Sadasivam M, Ding JL: Receptor-ligand interaction between vitellogenin receptor (VtgR) and vitellogenin (Vtg), implications on low density lipoprotein receptor and apolipoprotein B/E. J Biol Chem. 2003, 278: 2799-2806. 10.1074/jbc.M205067200.

Baron D, Guiguen Y: Gene expression during gonadal sex differentiation in rainbow trout (Oncorhynchus mykiss): from candidate gene studies to high throughout genomic approach. Fish Physiol Biochem. 2003, 28: 119-123. 10.1023/B:FISH.0000030496.21741.6c.

Hiramatsu N, Chapman RW, Lindzey JK, Haynes MR, Sullivan CV: Molecular characterization and expression of vitellogenin receptor from white perch (Morone americana). Biol Reprod. 2004, 70: 1720-1730. 10.1095/biolreprod.103.023655.

Black D, Skinner ER: Changes in plasma lipoproteins and tissue lipoprotein lipase and salt-resistant lipase activities during spawning in the rainbow trout (Salmo gairdnerii R.). Comp Biochem Physiol B. 1987, 88 (1): 261-267. 10.1016/0305-0491(87)90111-8.

Kwon JY, Prat F, Randall C, Tyler CR: Molecular characterization of putative yolk processing enzymes and their expression during oogenesis and embryogenesis in rainbow trout (Oncorhynchus mykiss). Biol Reprod. 2001, 65: 1701-1709. 10.1095/biolreprod65.6.1701.

Ibáñez AJ, Peinado-Onsurbe J, Sánchez E, Prat F: The role of lipoprotein lipase (LPL) in the incorporation of neutral lipids into the oocytes of the European sea bass (Dicentrarchus labrax L.) during gonadal development. Fish Physiol Biochem. 2003, 28: 291-293. 10.1023/B:FISH.0000030558.82463.99.

Carnevali O, Cionna C, Tosti L, Lubzens E, Maradonna F: Role of cathepsins in ovarian follicle growth and maturation. Gen Comp Endocrinol. 2006, 146: 195-203. 10.1016/j.ygcen.2005.12.007.

Wood AW, Van Der Kraak G: Yolk proteolysis in rainbow trout oocytes after serum-free culture: evidence for a novel biochemical mechanism of atresia in oviparous vertebrates. Mol Reprod Dev. 2003, 65: 219-227. 10.1002/mrd.10272.

Goetz FW: The "ups" and "downs" in using subtractive cloning techniques to isolate regulated genes in fish. Integr Comp Biol. 2003, 43: 786-793. 10.1093/icb/43.6.786.

Matsubara T, Nagae M, Ohkubo N, Andoh T, Sawaguchi S, Hiramatsu N, Sullivan CV, Hara A: Multiple vitellogenins and their unique roles in marine teleosts. Fish Physiol Biochem. 2003, 28: 295-299. 10.1023/B:FISH.0000030559.71954.37.

Fabra M, Cerdà J: Ovarian cysteine proteinases in the teleost Fundulus heteroclitus: molecular cloning and gene expression during vitellogenesis and oocyte maturation. Mol Reprod Dev. 2004, 67: 282-294. 10.1002/mrd.20018.

Aegerter S, Jalabert B, Bobe J: Large scale real-time PCR analysis of mRNA abundance in rainbow trout eggs in relationship with egg quality and post-ovulatory ageing. Mol Reprod Dev. 2005, 72: 377-385. 10.1002/mrd.20361.

Brooks S, Tyler CR, Carnevali O, Coward K, Sumpter JP: Molecular characterization of ovarian cathepsin D in the rainbow trout, Oncorhynchus mykiss. Gene. 1997, 201: 45-54. 10.1016/S0378-1119(97)00426-5.

Tateno H, Saneyoshi A, Ogawa T, Muramoto K, Kamiya H, Saneyoshi M: Isolation and characterization of rhamnose-binding lectins from eggs of steelhead trout (Oncorhynchus mykiss) homologous to low density lipoprotein receptor superfamily. J Biol Chem. 1998, 273: 19190-19197. 10.1074/jbc.273.30.19190.

Dong C-H, Yang S-T, Yang Z-A, Zhang L, Gui J-F: A C-type lectin associated and translocated with cortical granules during oocyte maturation and egg fertilization in fish. Dev Biol. 2004, 265: 341-354. 10.1016/j.ydbio.2003.08.028.

Tateno H, Yamaguchi T, Ogawa T, Muramoto K, Watanabe T, Kamiya H, Saneyoshi M: Immunohistochemical localization of rhamnose-binding lectins in the steelhead trout (Oncorhynchus mykiss). Dev Comp Immunol. 2002, 26: 543-550. 10.1016/S0145-305X(02)00007-1.

Shibata Y, Iwamatsu T, Oba Y, Kobayashi D, Tanaka M, Nagahama Y, Suzuki N, Yoshikuni M: Identification and cDNA cloning of alveolin, an extracellular metalloproteinase, which induces chorion hardening of medaka (Oryzias latipes) eggs upon fertilization. J Biol Chem. 2000, 275: 8349-8354. 10.1074/jbc.275.12.8349.

Asahina S, Sato C, Kitajima K: Developmental expression of a sialyltransferase responsible for sialylation of cortical alveolus glycoprotein during oogenesis in rainbow trout (Oncorhynchus mykiss). J Biochem. 2004, 136: 189-198. 10.1093/jb/mvh106.

Crichton RR: Proteins of iron storage and transport. Adv Protein Chem. 1990, 40: 281-363.

Aegerter S, Jalabert B, Bobe J: Messenger RNA stockpile of cyclin B, insulin-like growth factor I, insulin-like growth factor II, insulin-like growth factor receptor Ib, and p53 in the rainbow trout oocyte in relation with developmental competence. Mol Reprod Dev. 2004, 67: 127-135. 10.1002/mrd.10384.

Yoshida N, Yamashita M: Non-dependence of cyclin E/Cdk2 kinase activity on the initiation of oocyte maturation in goldfish. Dev Growth Differ. 2000, 42: 285-294. 10.1046/j.1440-169x.2000.00506.x.

Sammar M, Levi L, Hurvitz A, Lubzens E: Studies on retinol-binding protein during vitellogenesis in the rainbow trout (Oncorhynchus mykiss). Gen Comp Endocrinol. 2005, 141: 141-151. 10.1016/j.ygcen.2004.12.014.

Schekman R, Orci L: Coat proteins and vesicle budding. Science. 1996, 271: 1526-1533. 10.1126/science.271.5255.1526.

Swanson P, Bernard M, Nozaki M, Suzuki K, Kawauchi H, Dickhoff WW: Gonadotropins I and II in juvenile coho salmon. Fish Physiol Biochem. 1989, 7: 169-176. 10.1007/BF00004704.

Swanson P, Suzuki K, Kawauchi H, Dickhoff WW: Isolation and characterization of coho salmon gonadotropins, GTH I and GTH II. Biol Reprod. 1991, 44: 29-38. 10.1095/biolreprod44.1.29.

Swanson P: Salmon gonadotropins: reconciling old and new ideas. Proceedings of the Fourth International Symposium on the Reproductive Physiology of Fish. Edited by: Scott AP, Sumpter JP, Kime DE, Rolfe MS. 1991, University of East Anglia, Norwich, England, 2-7.

Visser JA, de Jong FH, Laven JSE, Themmen APN: Anti-Müllerian hormone: a new marker for ovarian function. Reproduction. 2006, 131: 1-9. 10.1530/rep.1.00529.

Rodríguez-Marí A, Yan Y-L, BreMiller RA, Wilson C, Cañestro C, Postlethwait JH: Characterization and expression pattern of zebrafish anti-Müllerian hormone (amh) relative to sox9a, sox 9b, and cyp19a1a, during gonad development. Gene Expression Patterns. 2005, 5: 655-667. 10.1016/j.modgep.2005.02.008.

Halm S, Rocha A, Miura T, Prat F, Zanuy S: Anti-müllerian hormone (AMH/AMH) in the European sea bass: its gene structure, regulatory elements, and the expression of alternatively-spliced isoforms. Gene. 2007, 388: 148-158. 10.1016/j.gene.2006.10.018.

Sawatari E, Shikina S, Takeuchi T, Yoshizaki G: A novel transforming growth factor-β superfamily member expressed in gonadal somatic cells enhances primordial germ cell and spermatogonial proliferation in rainbow trout (Oncorhynchus mykiss). Dev Biol. 2007, 301: 266-275. 10.1016/j.ydbio.2006.10.001.