UNAIDS : Core slides: Global summary of the AIDS epidemic. 2012, Available at: [http://www.unaids.org/en/media/unaids/contentassets/documents/epidemiology/2012/201207_epi_core_en.pdf]. Accessed 20 Nov 2012, Available at: []. Accessed 20 Nov 2012
UNAIDS : Global AIDS epidemic facts and figures. 2012, Available at: [http://www.unaids.org/en/media/unaids/contentassets/documents/epidemiology/2012/201207_FactSheet_Global_en.pdf]. Accessed 20 Nov 2012, Available at: []. Accessed 20 Nov 2012
NACC and NASCOP : Kenya AIDS Epidemic update. 2012, Available at: [http://www.unaids.org/en/dataanalysis/knowyourresponse/countryprogressreports/2012countries/ce_KE_Narrative_Report.pdf]. Accessed 04 April 2013, Available at: []. Accessed 04 April 2013
Bendavid E, Bhattacharya J: The president’s emergency plan for AIDS relief in Africa: an evaluation of outcomes. Ann Intern Med. 2009, 150 (10): 688-695.
Jahn A, Floyd S, Crampin AC: Population-level effect of HIV on adult mortality and early evidence of reversal after introduction of antiretroviral therapy in Malawi. Lancet. 2008, 371 (9624): 1603-1611.
UNAIDS : World AIDS Day Report. 2011, Available at: [http://www.unaids.org/en/media/unaids/contentassets/documents/unaidspublication/2011/jc2216_worldaidsday_report_2011_en.pdf]. Accessed 20 Nov 2012, Available at: []. Accessed 20 Nov 2012
Gupta RK, Hill A, Sawyer AW: Virological monitoring and resistance to first-line highly active antiretroviral therapy in adults infected with HIV-1 treated under WHO guidelines: a systematic review and meta-analysis. Lancet Infect Dis. 2009, 9 (7): 409-417.
Keiser O, Tweya H, Boulle A: Switching to second-line antiretroviral therapy in resource-limited settings: comparison of programmes with and without viral load monitoring. AIDS. 2009, 23 (14): 1867-1874.
World Health Organization : Antiretroviral therapy for HIV infection in adults and adolescents: recommendations for a public health approach -. 2010, Available at: [http://whqlibdoc.who.int/publications/2010/9789241599764_eng.pdf]. Accessed 20 Nov 2012, rev, Available at: []. Accessed 20 Nov 2012
Badri M, Lawn SD, Wood R: Utility of CD4 cell counts for early prediction of virological failure during antiretroviral therapy in a resource-limited setting. BMC Infect Dis. 2008, 8: 89-
Mee P, Fielding KL, Charalambous S, Churchyard GJ, Grant AD: Evaluation of the WHO criteria for antiretroviral treatment failure among adults in South Africa. AIDS. 2008, 22 (15): 1971-1977.
van Oosterhout JJ, Brown L, Weigel R: Diagnosis of antiretroviral therapy failure in Malawi: poor performance of clinical and immunological WHO criteria. Trop Med Int Health. 2009, 14 (8): 856-861.
Barth RE, Tempelman HA, Moraba R, Hoepelman AI: Long-term outcome of an HIV-treatment programme in Rural Africa: viral suppression despite early mortality. AIDS Res Treat. 2011, 2011: 434375-
Kantor R, Diero L, Delong A: Misclassification of first-line antiretroviral treatment failure based on immunological monitoring of HIV infection in resource-limited settings. Clin Infect Dis. 2009, 49 (3): 454-462.
Barth RE, van der Loeff MF, Schuurman R, Hoepelman AI, Wensing AM: Virological follow-up of adult patients in antiretroviral treatment programmes in sub-Saharan Africa: a systematic review. Lancet Infect Dis. 2010, 10 (3): 155-166.
Stadeli KM, Richman DD: Rates of emergence of HIV drug resistance in resource-limited settings: a systematic review. Antivir Ther. 2013, 18 (1): 115-123.
National AIDS & STI Control Programme: Kenya National Clinical Manual For ART Providers. Available at: [http://nascop.or.ke/library/ART%20guidelines/Kenya%20clinical%20National%20Manual%20for%20ART%20providers.pdf]. Accessed 20 Nov 2012
Hassan AS, Fielding KL, Thuo NM: Early loss to follow-up of recently diagnosed HIV-infected adults from routine pre-ART care in a rural district hospital in Kenya: a cohort study. Trop Med Int Health. 2012, 17 (1): 82-93.
Goldman JD, Cantrell RA, Mulenga LB: Simple adherence assessments to predict virologic failure among HIV-infected adults with discordant immunologic and clinical responses to antiretroviral therapy. AIDS Res Hum Retroviruses. 2008, 24 (8): 1031-1035.
Weidle PJ, Wamai N, Solberg P: Adherence to antiretroviral therapy in a home-based AIDS care programme in rural Uganda. Lancet. 2006, 368 (9547): 1587-1594.
Cane P: HIV drug resistance testing. Methods Mol Biol. 2011, 665: 123-132.
Liu TF, Shafer RW: Web resources for HIV type 1 genotypic-resistance test interpretation. Clin Infect Dis. 2006, 42 (11): 1608-1618.
Rhee SY, Gonzales MJ, Kantor R: Human immunodeficiency virus reverse transcriptase and protease sequence database. Nucleic Acids Res. 2003, 31 (1): 298-303.
Kosakovsky Pond SL, Posada D, Stawiski E: An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1. PLoS Comput Biol. 2009, 5 (11): e1000581-
, : Guidelines for antiretroviral therapy in Kenya. 2011, [Available at: [http://healthservices.uonbi.ac.ke/sites/default/files/centraladmin/healthservices/Kenya%20Treatment%20Guidelines%202011.pdf]. Accessed 04 May 2013, 4, [Available at: []. Accessed 04 May 2013
Stadeli KM, Richman DD: Rates of emergence of HIV drug resistance in resource-limited settings: a systematic review. Antivir Ther. 2013, 18 (1): 115-123.
World Health Organization : HIV Drug Resistance Early Warning Indicators. World Health Organization indicators to monitor HIV drug resistance prevention at antiretroviral treatment sites. 2010, Available at: [http://www2.paho.org/hq/dmdocuments/2010/hivdr-early-warning-indicators—updated-april-2010.pdf]. Accessed 20 Nov 2012, June Update, Available at: []. Accessed 20 Nov 2012
Sigaloff KC, Hamers RL, Menke J: Early warning indicators for population-based monitoring of HIV drug resistance in 6 African countries. Clin Infect Dis. 2012, 54 (Suppl 4): S294-S299.
El-Khatib Z, Katzenstein D, Marrone G: Adherence to drug-refill is a useful early warning indicator of virologic and immunologic failure among HIV patients on first-line ART in South Africa. PLoS One. 2011, 6 (3): e17518-
Nachega JB, Hislop M, Dowdy DW: Adherence to highly active antiretroviral therapy assessed by pharmacy claims predicts survival in HIV-infected South African adults. J Acquir Immune Defic Syndr. 2006, 43 (1): 78-84.
Messou E, Chaix ML, Gabillard D: Association between medication possession ratio, virologic failure and drug resistance in HIV-1-infected adults on antiretroviral therapy in Cote d’Ivoire. J Acquir Immune Defic Syndr. 2011, 56 (4): 356-364.
Dowshen N, D’Angelo L: Health care transition for youth living with HIV/AIDS. Pediatrics. 2011, 128 (4): 762-771.
Assoumou L, Descamps D, Yerly S: Prevalence of HIV-1 drug resistance in treated patients with viral load >50 copies/mL in 2009: a French nationwide study. J Antimicrob Chemother. 2013, 68 (6): 1400-1405.
Nettles RE, Kieffer TL, Kwon P: Intermittent HIV-1 viremia (Blips) and drug resistance in patients receiving HAART. JAMA. 2005, 293 (7): 817-829.
Lee PK, Kieffer TL, Siliciano RF, Nettles RE: HIV-1 viral load blips are of limited clinical significance. J Antimicrob Chemother. 2006, 57 (5): 803-805.
van Sighem A, Zhang S, Reiss P: Immunologic, virologic, and clinical consequences of episodes of transient viremia during suppressive combination antiretroviral therapy. J Acquir Immune Defic Syndr. 2008, 48 (1): 104-108.
Hamers RL, Wallis CL, Kityo C: HIV-1 drug resistance in antiretroviral-naive individuals in sub-Saharan Africa after rollout of antiretroviral therapy: a multicentre observational study. Lancet Infect Dis. 2011, 11 (10): 750-759.
Gupta RK, Jordan MR, Sultan BJ: Global trends in antiretroviral resistance in treatment-naive individuals with HIV after rollout of antiretroviral treatment in resource-limited settings: a global collaborative study and meta-regression analysis. Lancet. 2012, 380 (9849): 1250-1258.
Hamers RL, Schuurman R, Sigaloff KC: Effect of pretreatment HIV-1 drug resistance on immunological, virological, and drug-resistance outcomes of first-line antiretroviral treatment in sub-Saharan Africa: a multicentre cohort study. Lancet Infect Dis. 2012, 12 (4): 307-317.
Kuritzkes DR, Lalama CM, Ribaudo HJ: Preexisting resistance to nonnucleoside reverse-transcriptase inhibitors predicts virologic failure of an efavirenz-based regimen in treatment-naive HIV-1-infected subjects. J Infect Dis. 2008, 197 (6): 867-870.
Wittkop L, Gunthard HF, de Wolf F: Effect of transmitted drug resistance on virological and immunological response to initial combination antiretroviral therapy for HIV (EuroCoord-CHAIN joint project): a European multicohort study. Lancet Infect Dis. 2011, 11 (5): 363-371.
Hassan AS, Mwaringa SM, Obonyo CA: Low prevalence of transmitted HIV type 1 drug resistance among antiretroviral-naive adults in a Rural HIV clinic in Kenya. AIDS Res Hum Retroviruses. 2013, 29 (1): 129-135.