Genome sequencing of three bacteria associated to black band disease from a Colombian reef-building coral

Arotsker, 2015, Changes in the bacterial community associated with black band disease in a Red Sea coral, Favia sp., in relation to disease phases, Dis. Aquat. Org., 116, 47, 10.3354/dao02911 Meyer, 2016, Microbiome shifts and the inhibition of quorum sensing by black band disease cyanobacteria, ISME J., 10, 1204, 10.1038/ismej.2015.184 Sato, 2016, Integrated approach to understanding the onset and pathogenesis of black band disease in corals, Environ. Microbiol., 18, 752, 10.1111/1462-2920.13122 Bolger, 2014, Trimmomatic: a flexible trimmer for Illumina Sequence Data, Bioinformatics, 30, 2114, 10.1093/bioinformatics/btu170 Joshi Krueger, 2015 Bankevich, 2012, SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J. Comput. Biol., 19, 455, 10.1089/cmb.2012.0021 Zerbino, 2008, Velvet: algorithms for de novo short read assembly using de Bruijn graphs, Genome Res., 18, 821, 10.1101/gr.074492.107 Simpson, 2009, ABySS: a parallel assembler for short read sequence data, Genome Res., 19, 1117, 10.1101/gr.089532.108 Lagesen, 2007, RNAmmer: consistent and rapid annotation of ribosomal RNA genes, Nucleic Acids Res., 35, 3100, 10.1093/nar/gkm160 Chun, 2007, EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences, Int. J. Syst. Evol. Microbiol., 57, 2259, 10.1099/ijs.0.64915-0 Aziz, 2008, The RAST Server: rapid annotations using subsystems technology, BMC Genomics, 9, 1, 10.1186/1471-2164-9-75