Đa dạng di truyền của các quần thể tách biệt của các giống lúa địa phương ở Indonesia (Oryza sativa L.) thu thập tại Đông Kalimantan trên đảo Borneo
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Tài liệu tham khảo
Adoukonou-Sagbadja H, Wagner C, Dansi A, Ahlemeyer J, Dainou O, Akpagana K, et al. Genetic diversity and population differentiation of traditional fonio millet ( Digitaria spp.) landraces from different agro-ecological zones of West Africa. Theor Appl Genet 2007;115:917–31.
Anau N. A history of the Kenyah Leppo’ Ké and Nyibun in Pujungan subdistrict. In: Cristina Eghenter, Bernard Sellato, G. Simon Devung, editors. Social science research and conservation management in the interior of Borneo. Bogor, Indonesia: CIFOR (Center for International Forestry Research); 2003. p. 153–174.
Barnaud A, Deu M, Garine E, McKey D, Joly H. Local genetic diversity of sorghum in a village in northern Cameroon: structure and dynamics of landraces. Theor Appl Genet 2007;114:237–48.
Barry MB, Pham JL, Noyer JL, Courtois B, Billot C, Ahmadi N. Implications for in situ genetic resource conservation from the ecogeographical distribution of rice genetic diversity in Maritime Guinea. Plant Genet Resour 2007;5:45–54.
Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, et al. Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genetics 2007;3:e163.
Cavalli-Sforza LL, Edwards AWF. Phylogentic analysis. Models and estimation procedures. Am J Hum Genet 1967;19:233–57.
Eghenter C, Sellato B. Introduction. In: Eghenter C, Sellato B, Simon Devung G, editors. Social science research and conservation management in the interior of Borneo. Bogor: CIFOR (Center for International Forestry Research); 2003. p. 1–34.
Falush D, Stephens M, Pritchard JK. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003;164:1567–87.
Gao L-z, Innan H. Nonindependent domestication of the two rice subspecies, Oryza sativa ssp. indica and ssp. japonica, demonstrated by multilocus microsatellites. Genetics 2008;179:965–76.
Gao LiZhi, Zhang ChiHong, Chang LiPing, Jia JiZeng, Qiu ZongEn, Dong YuShen. Microsatellite diversity within Oryza sativa with emphasis on indica-japonica divergence. Genet Res 2005;85:1–14.
Garris AJ, Tai TH, Coburn J, Kresovich S, McCouch S. Genetic structure and diversity in Oryza sativa L. Genetics 2005;169:1631–8.
Jain S, Jain R, McCouch S. Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet 2004;109:965–77.
Kovach MJ, Sweeney MT, McCouch SR. New insights into the history of rice domestication. Trends Genet 2007;23:578–87.
Liu K, Muse SV. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 2005;21:2128–9.
Londo JP, Chiang Y-C, Hung K-H, Chiang T-Y, Schaal BA. Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. Proc Natl Acad Sci 2006;103:9578–83.
Lu H, Redus MA, Coburn JR, Rutger JN, McCouch SR, Tai TH. Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis. Crop Sci 2005;45:66–76.
Pessoa-Filho M, Beló A, Alcochete A, Rangel P, Ferreira M. A set of multiplex panels of microsatellite markers for rapid molecular characterization of rice accessions. BMC Plant Biol 2007;7:23.
Prashanth SR, Parani M, Mohanty BP, Talame V, Tuberosa R, Parida A. Genetic diversity in cultivars and landraces of Oryza sativa subsp. indica as revealed by AFLP markers. Genome 2002;45:451–9.
Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000;155:945–59.
Rohlf F (2007) NTSYS-pc: Numerical Taxonomy System, ver. 2.20. In. Exeter Publishing, Ltd, Setauket, NY, USA
Setyawati I. Biodiversity and traditional knowledge: rice varieties among the Leppo’ Ké of Apau Ping. In: Eghenter C, Sellato B, Simon Devung G, editors. Social science research and conservation management in the interior of Borneo. Bogor, Indonesia: CIFOR (Center for International Forestry Research); 2003. p. 35–48.
Song ZP, Xu X, Wang B, Chen JK, Lu BR. Genetic diversity in the northernmost Oryza rufipogon populations estimated by SSR markers. Theor Appl Genet 2003;107:1492–9.
Sweeney MT, Thomson MJ, Cho YG, Park YJ, Williamson SH, Bustamante CD, et al. Global dissemination of a single mutation conferring white pericarp in rice. PLoS Genetics 2007;3:e133.
Thomson M, Septiningsih E, Suwardjo F, Santoso T, Silitonga T, McCouch S. Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Theor Appl Genet 2007;114:559–68.
Vaughan DA, Lu B-R, Tomooka N. Was Asian rice (Oryza sativa) domesticated more than once? Rice J 2008;1:16–24.
Xu X, Lu B-R, Chen YH, Xu M, Rong J, Ye P, et al. Inferring population history from fine-scale spatial genetic analysis in Oryza rufipogon (Poaceae). Mol Ecol 2006;15:1535–44.
Yang GP, Saghai Maroof MA, Xu CG, Zhang Q, Biyashev RM. Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Mol Gen Genet 1994;245:187–94.
Yu SB, Xu WJ, Vijayakumar CHM, Ali J, Fu BY, Xu JL, et al. Molecular diversity and multilocus organization of the parental lines used in the International Rice Molecular Breeding Program. Theor Appl Genet 2003;108:131–40.
Zhang H, Sun J, Wang M, Liao D, Zeng Y, Shen S, et al. Genetic structure and phylogeography of rice landraces in Yunnan, China, revealed by SSR. Genome 2007;50:72–83.
