Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

Lander, E.S. The new genomics: global views of biology. Science 274, 536–539 (1996).

Collins, F.S. et al. New goals for the U.S. human genome project: 1998–2003. Science 282, 682–689 (1998).

Duggan, D.J., Bittner, M., Chen, Y., Meltzer, P. & Trent, J.M. Expression profiling using cDNA microarrays. Nat. Genet. 21, 10–14 (1999).

Hacia, J.G. Resequencing and mutational analysis using oligonucleotide microarrays. Nat. Genet. 21, 42–47 (1999).

Okubo, K. et al. Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nat. Genet. 2, 173–179 (1992).

Velculescu, V.E., Zhang, L., Vogelstein, B. & Kinzler, K.W. Serial analysis of gene expression. Science 270, 484–487 (1995).

Bachem, C.W.B. et al. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. Plant J. 9, 745–753 (1996).

Shimkets, R.A. et al. Gene expression analysis by transcript profiling coupled to gene database query. Nat. Biotechnol. 17, 798–803 (1999).

Audic, S. & Claverie, J. The significance of digital gene expression profiles. Genome Res. 7, 986–995 (1997).

Wittes, J. & Friedman, H.P. Searching for evidence of altered gene expression: a comment on statistical analysis of microarray data. J. Natl. Cancer Inst. 91, 400–401 (1999).

Richmond, C.S., Glasner, J.D., Mau, R., Jin, H. & Blattner, F.R. Genome-wide expression profiling in Escherichia coli K-12. Nucleic Acids Res. 27, 3821–3835 (1999).

Brenner, S. et al. In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNAs. Proc. Natl. Acad. Sci. USA 97, 1655–1670 (2000).

Velculescu, V.E. et al. Characterization of the yeast transcriptome. Cell 88, 243–251 (1997).

Neilson, L. et al. Molecular phenotype of the human oocyte by PCR–SAGE. Genomics 63, 13–24 (2000).

Altschul, S.F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389–3402 (1997).

Chervitz, S.A. et al. Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. Nucleic Acids Res. 27, 74–78 (1999).

Brewster, N.K., Val, D.L., Walker, M.E. & Wallace, J.C. Regulation of pyruvate carboxylase isozyme (PYC1, PYC2) gene expression in Saccharomyces cerevisiae during fermentative and nonfermentative growth. Arch. Biochem. Biophys. 311, 62–71 (1994).