Gastrointestinal microbiology enters the metagenomics era

Current Opinion in Gastroenterology - Tập 24 Số 1 - Trang 4-10 - 2008
Daniel N. Frank1, Norman R. Pace1,2,3,4
1Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, USA
2e-mail: [email protected]
3fax: +1 303 492 7744
4to Norman R. Pace, Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80309-0347, USA Tel: +1 303 735 1864

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Tài liệu tham khảo

Bry, 1996, Science, 273, 1380, 10.1126/science.273.5280.1380

Stappenbeck, 2002, Proc Natl Acad Sci U S A, 99, 15451, 10.1073/pnas.202604299

Hooper, 2002, Annu Rev Nutr, 22, 283, 10.1146/annurev.nutr.22.011602.092259

Rakoff-Nahoum, 2004, Cell, 118, 229, 10.1016/j.cell.2004.07.002

Mazmanian, 2005, Cell, 122, 107, 10.1016/j.cell.2005.05.007

Kelly, 2005, Trends Immunol, 26, 326, 10.1016/j.it.2005.04.008

Savage, 1977, Annu Rev Microbiol, 31, 107, 10.1146/annurev.mi.31.100177.000543

Relman, 1993, J Infect Dis, 168, 1, 10.1093/infdis/168.1.1

Falk, 1998, Microbiol Mol Biol Rev, 62, 1157, 10.1128/MMBR.62.4.1157-1170.1998

Vaughan, 2000, Curr Issues Intest Microbiol, 1, 1

Frank, 2001, Curr Opin Gastroenterol, 17, 52, 10.1097/00001574-200101000-00010

Handelsman, 2004, Microbiol Mol Biol Rev, 68, 669, 10.1128/MMBR.68.4.669-685.2004

Zoetendal, 2004, J Nutr, 134, 465, 10.1093/jn/134.2.465

Backhed, 2005, Science, 307, 1915, 10.1126/science.1104816

Ley, 2006, Cell, 124, 837, 10.1016/j.cell.2006.02.017

Beja, 2000, Science, 289, 1902, 10.1126/science.289.5486.1902

Beja, 2000, Environ Microbiol, 2, 516, 10.1046/j.1462-2920.2000.00133.x

Millikan, 1999, Appl Environ Microbiol, 65, 3129, 10.1128/AEM.65.7.3129-3133.1999

Rondon, 2000, Appl Environ Microbiol, 66, 2541, 10.1128/AEM.66.6.2541-2547.2000

Tyson, 2004, Nature, 428, 37, 10.1038/nature02340

Tringe, 2005, Science, 308, 554, 10.1126/science.1107851

Gill, 2006, Science, 312, 1355, 10.1126/science.1124234

Ott, 2004, J Clin Microbiol, 42, 2566, 10.1128/JCM.42.6.2566-2572.2004

Hopkins, 2005, FEMS Microbiol Ecol, 54, 77, 10.1016/j.femsec.2005.03.001

Frank, 2007, Proc Natl Acad Sci U S A, 104, 13780, 10.1073/pnas.0706625104

Call, 2003, J Microbiol Methods, 53, 235, 10.1016/S0167-7012(03)00027-7

Palmer, 2006, Nucleic Acids Res, 34, e5, 10.1093/nar/gnj007

Desantis, 2005, FEMS Microbiol Lett, 245, 271, 10.1016/j.femsle.2005.03.016

Wilson, 2002, Mol Cell Probes, 16, 119, 10.1006/mcpr.2001.0397

Wilson, 2002, Appl Environ Microbiol, 68, 2535, 10.1128/AEM.68.5.2535-2541.2002

Wang, 2002, FEMS Microbiol Lett, 213, 175, 10.1111/j.1574-6968.2002.tb11302.x

Harmsen, 2000, FEMS Microbiol Lett, 183, 125, 10.1111/j.1574-6968.2000.tb08945.x

Kruse, 1999, Br J Nutr, 82, 375, 10.1017/S0007114599001622

Tannock, 2000, Appl Environ Microbiol, 66, 2578, 10.1128/AEM.66.6.2578-2588.2000

Welling, 1997, Scand J Gastroenterol Suppl, 222, 17, 10.1080/00365521.1997.11720711

Suau, 1999, Appl Environ Microbiol, 65, 4799, 10.1128/AEM.65.11.4799-4807.1999

Wilson, 1996, Appl Environ Microbiol, 62, 2273, 10.1128/AEM.62.7.2273-2278.1996

Hold, 2002, FEMS Microbiol Ecol, 39, 33, 10.1111/j.1574-6941.2002.tb00904.x

Eckburg, 2005, Science, 308, 1635, 10.1126/science.1110591

Ley, 2006, Nature, 444, 1022, 10.1038/4441022a

Bik, 2006, Proc Natl Acad Sci U S A, 103, 732, 10.1073/pnas.0506655103

Hayashi, 2005, J Med Microbiol, 54, 1093, 10.1099/jmm.0.45935-0

Hayashi, 2002, Microbiol Immunol, 46, 535, 10.1111/j.1348-0421.2002.tb02731.x

Gophna, 2006, J Clin Microbiol, 44, 4136, 10.1128/JCM.01004-06

Manichanh, 2006, Gut, 55, 205, 10.1136/gut.2005.073817

Monstein, 2000, J Med Microbiol, 49, 817, 10.1099/0022-1317-49-9-817

Stackebrandt, 1994, Int J Syst Bacteriol, 44, 846, 10.1099/00207713-44-4-846

Zoetendal, 2002, Appl Environ Microbiol, 68, 3401, 10.1128/AEM.68.7.3401-3407.2002

Lepage, 2005, Inflamm Bowel Dis, 11, 473, 10.1097/01.MIB.0000159662.62651.06

Green, 2006, J Appl Microbiol, 100, 460, 10.1111/j.1365-2672.2005.02783.x

Edwards, 2002, Br J Nutr, 88, S11, 10.1079/BJN2002625

Palmer, 2007, PLoS Biol, 5, e177, 10.1371/journal.pbio.0050177

Bry, 1994, Proc Natl Acad Sci U S A, 91, 10335, 10.1073/pnas.91.22.10335

Hooper, 2001, Science, 291, 881, 10.1126/science.291.5505.881

Rawls, 2006, Cell, 127, 423, 10.1016/j.cell.2006.08.043

Hayashi, 2002, Microbiol Immunol, 46, 819, 10.1111/j.1348-0421.2002.tb02769.x

Tannock, 2004, Appl Environ Microbiol, 70, 2129, 10.1128/AEM.70.4.2129-2136.2004

Bartosch, 2005, Clin Infect Dis, 40, 28, 10.1086/426027

Young, 2004, J Clin Microbiol, 42, 1203, 10.1128/JCM.42.3.1203-1206.2004

Giaffer, 1991, J Med Microbiol, 35, 238, 10.1099/00222615-35-4-238

Krook, 1981, J Clin Pathol, 34, 645, 10.1136/jcp.34.6.645

Van de Merwe, 1988, Scand J Gastroenterol, 23, 1125, 10.3109/00365528809090179

Seksik, 2003, Gut, 52, 237, 10.1136/gut.52.2.237

Mangin, 2004, FEMS Micro Ecol, 50, 25, 10.1016/j.femsec.2004.05.005

Prindiville, 2004, Inflamm Bowel Dis, 10, 824, 10.1097/00054725-200411000-00017

Scanlan, 2006, J Clin Microbiol, 44, 3980, 10.1128/JCM.00312-06

Komanduri, 2007, Clin Gastroenterol Hepatol, 5, 352, 10.1016/j.cgh.2007.01.001