Fast gapped-read alignment with Bowtie 2

Nature Methods - Tập 9 Số 4 - Trang 357-359 - 2012
Ben Langmead1, Steven L. Salzberg1
1Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, Maryland, USA

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Tài liệu tham khảo

McKenna, A. et al. Genome Res. 20, 1297–1303 (2010).

Trapnell, C. et al. Nat. Biotechnol. 28, 511–515 (2010).

Langmead, B., Hansen, K.D. & Leek, J.T. Genome Biol. 11, R83 (2010).

Li, H. & Homer, N. Brief. Bioinform. 11, 473–483 (2010).

Ferragina, P. & Manzini, G. Proc. 41st Annual Symposium on Foundations of Computer Science 390–398 (IEEE Comput. Soc.; 2000).

Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Genome Biol. 10, R25 (2009).

Lam, T. et al. IEEE International Conference on Bioinformatics and Biomedicine 31–36 (2009).

Li, H. & Durbin, R. Bioinformatics 25, 1754–1760 (2009).

Li, H. & Durbin, R. Bioinformatics 26, 589–595 (2010).

Li, R. et al. Bioinformatics 25, 1966–1967 (2009).

Ajay, S.S., Parker, S.C., Ozel Abaan, H., Fuentes Fajardo, K.V. & Margulies, E.H. Genome Res. 21, 1498–1505 (2010).

1000 Genomes Project Consortium. Nature 467, 1061–1073 (2010).

Rothberg, J.M. et al. Nature 475, 348–352 (2011).

Li, H. et al. Bioinformatics 25, 2078–2079 (2009).