Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search

Analytical Chemistry - Tập 74 Số 20 - Trang 5383-5392 - 2002
Andrew Keller1, Alexey I. Nesvizhskii1, Eugene Kolker1, Ruedi Aebersold1
1Institute for Systems Biology, 1441 North 34th Street, Seattle, Washington 98103

Tóm tắt

Từ khóa


Tài liệu tham khảo

Pandey A., 2000, Nature, 405, 846, 10.1038/35015709

Aebersold R., 2001, Chem. Rev., 101, 287, 10.1021/cr990076h

Link A. J., 1999, Nat. Biotechnol., 17, 682

Washburn M. P., 2001, Nat. Biotechnol., 19, 247, 10.1038/85686

Gavin A., 2002, Nature, 415, 147, 10.1038/415141a

Ho Y., 2002, Nature, 415, 183, 10.1038/415183a

Fenyo D., 2000, Curr. Opin. Biotechnol., 11, 395, 10.1016/S0958-1669(00)00115-4

Yates J. R., 1995, Anal. Chem., 67, 1436, 10.1021/ac00104a020

Pevzner P. A., 2001, Genome Res., 11, 299

Liebler D. C., 2002, Anal. Chem., 74, 203, 10.1021/ac0155512

Oda Y., 1999, Proc. Natl. Acad. Sci., 96, 6596

Gygi S. P., 1999, Nat. Biotechnol., 17, 999

Goodlett D. R., 2001, Rapid Commun. Mass Spectrom., 15, 1221, 10.1002/rcm.362

Taylor J. A., 1997, Rapid Commun. Mass Spectrom., 11, 1075, 10.1002/(SICI)1097-0231(19970615)11:9<1067::AID-RCM953>3.0.CO;2-L

Chen, T.; Kao, M.; Tepel, M.; Rush, J.; Church, G.The 11th AnnualSIAM-ACM Symposium on Discrete Algorithms (SODA 2000), San Francisco, 2000; ACM Press:  New York; pp 389−398.

Mann M., 1994, Anal. Chem., 66, 4399, 10.1021/ac00096a002

Shevchenko A., 2001, Anal. Chem., 73, 1926, 10.1021/ac0013709

Eng J. K., 1994, J. Am. Soc. Mass Spectrom., 5, 989

Perkins D. N., 1999, Electrophoresis, 20, 3567, 10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2

Field H. I., 2002, Proteomics, 2, 47, 10.1002/1615-9861(200201)2:1<36::AID-PROT36>3.0.CO;2-W

Bafna V., 2001, Bioinformatics, 17, S21, 10.1093/bioinformatics/17.suppl_1.S13

Han D. K., 2001, Nat. Biotechnol., 19, 951

Keller A., 2002, OMICS, 6, 212, 10.1089/153623102760092805

Lawrence C. B., 1994, Nucleic Acids Res., 22, 1280, 10.1093/nar/22.7.1272

Ewing B., 1998, Genome Res., 8, 185

Ewing B., 1998, Genome Res., 8, 194

Tabachnick B. G., 2001, Using Multivariate Statistics, 4

Pearson W. R., 1995, Protein Sci., 4, 1160, 10.1002/pro.5560040613

Johnson N. L., 1994, Continuous Univariate Distributions

Dempster A., 1977, Stat. Soc., 39, 38

Sadygov R. G., 2002, J. Proteome Res., 1, 215, 10.1021/pr015514r

Perez R. E., 2002, Proceedings of the 50th ASMS Conference on Mass Spectrometry and Allied Topics

Parker K. C., 2002, J. Am. Soc. Mass Spectrom., 13, 39, 10.1016/S1044-0305(01)00320-8

Zuo X., 2002, Proteomics, 2, 68