Distribution of new satellites and simple sequence repeats in annual and perennial Glycine species

Botanical Studies - Tập 56 Số 1 - Trang 1-11 - 2015
Chen, Hsuan1,2, Chung, Mei-Chu1, Tsai, Yuan-Ching1, Wei, Fu-Jin1, Hsieh, Jaw-Shu2, Hsing, Yue-Ie C.1
1Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
2Department of Agronomy, National Taiwan University, Taipei, Taiwan

Tóm tắt

The repeat sequences occupied more than 50 % of soybean genome. In order to understand where these repeat sequences distributed in soybean genome and its related Glycine species, we examined three new repeat sequences—soybean repeat sequence (SBRS1, SBRS2 and SBRS3), some nonspecific repeat sequences and 45S rDNA on several Glycine species, including annual and perennial accessions in this study. In the annual species, G. soja, signals for SBRS1 and ATT repeat can be found on each chromosome in GG genome, but those for SBRS2 and SBRS3 were located at three specific loci. In perennial Glycine species, these three SBR repeat frequently co-localized with 45S rDNA, two major 45S rDNA loci were found in all tetraploid species. However, an extra minor locus was found in one accession of the G. pescadrensis (Tab074), but not in another accession (Tab004). We demonstrate that some repetitive sequences are present in all Glycine species used in the study, but the abundancy is different in annual or perennial species. We suggest this study may provide additional information in investigations of the phylogeny in the Glycine species.

Tài liệu tham khảo

citation_journal_title=Proc Nat Acad Sci USA; citation_title=Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions; citation_author=EV Ananiev, RL Phillips, HW Rines; citation_volume=95; citation_publication_date=1998; citation_pages=13073-13078; citation_doi=10.1073/pnas.95.22.13073; citation_id=CR1 citation_journal_title=Genome; citation_title=Genome differentiation in Aegilops. 1. Distribution of highly repetitive DNA sequences on chromosomes of diploid species; citation_author=ED Badaeva, B Friebe, BS Gill; citation_volume=39; citation_publication_date=1996; citation_pages=293-306; citation_doi=10.1139/g96-040; citation_id=CR2 citation_journal_title=Ann Bot; citation_title=Nuclear DNA amounts in Angiosperms and their modern uses new estimates; citation_author=MD Bennett, P Bhandol, IJ Leitch; citation_volume=86; citation_publication_date=2000; citation_pages=859-909; citation_doi=10.1006/anbo.2000.1253; citation_id=CR3 citation_journal_title=J Amer Soc Hort Sci; citation_title=Variations in ribosomal RNA gene loci in spider lily (Lycoris spp.); citation_author=Y-C Chang, C-T Shii, M-C Chung; citation_volume=134; citation_publication_date=2009; citation_pages=567-573; citation_id=CR4 citation_journal_title=Bot Stud; citation_title=A repetitive sequence specific to Oryza species with BB genome and abundant in Oryza punctata Kotschy ex Steud; citation_author=YY Cheng, SA Fang, YC Lin, MC Chung; citation_volume=48; citation_publication_date=2007; citation_pages=263-272; citation_id=CR5 citation_journal_title=Theor Appl Genet; citation_title=Chromosomal polymorphism of ribosomal genes in the genus Oryza ; citation_author=MC Chung, YI Lee, YY Cheng, YJ Chou, CF Lu; citation_volume=116; citation_publication_date=2008; citation_pages=745-753; citation_doi=10.1007/s00122-007-0705-z; citation_id=CR6 citation_journal_title=Theor Appl Genet; citation_title=Introgression of a quantitative trait locus for yield from Glycine soja into commercial soybean cultivars; citation_author=VC Concibido, B Vallee, P Mclaird, N Pineda, J Meyer, L Hummel, J Yang, K Wu, X Delannay; citation_volume=106; citation_publication_date=2003; citation_pages=575-582; citation_id=CR7 citation_journal_title=Cytogenet Genome Res; citation_title=Similarities in the chromosomal distribution of AG and AC repeats within and between Drosophila, human and barley chromosomes; citation_author=A Cuadrado, N Jouve; citation_volume=119; citation_publication_date=2007; citation_pages=91-99; citation_doi=10.1159/000109624; citation_id=CR8 citation_journal_title=Theor Appl Genet; citation_title=Identification of different chromatin classes in wheat using in situ hybridization with simple sequence repeat oligonucleotides; citation_author=A Cuadrado, T Schwarzacher, N Jouve; citation_volume=101; citation_publication_date=2000; citation_pages=711-717; citation_doi=10.1007/s001220051535; citation_id=CR9 citation_journal_title=Cytogenet Genome Res; citation_title=Physical organisation of simple sequence repeats (SSRs) in Triticeae: structural, functional and evolutionary implications; citation_author=A Cuadrado, M Cardoso, N Jouve; citation_volume=120; citation_publication_date=2008; citation_pages=210-219; citation_doi=10.1159/000121069; citation_id=CR10 citation_journal_title=Aust J Bot; citation_title=Reproductive isolation between isozyme groups of Glycine tomentella (Leguminosae), and spontaneous doubling of their hybrids; citation_author=MJ Doyle, JE Grant, AHD Brown; citation_volume=34; citation_publication_date=1986; citation_pages=523-535; citation_doi=10.1071/BT9860523; citation_id=CR11 citation_journal_title=Proc Nat Acad Sci USA; citation_title=Multiple origins of polyploids in the Glycine tabacina complex inferred from chloroplast DNA polymorphism; citation_author=JJ Doyle, JL Doyle, AH Brown, J Grace; citation_volume=87; citation_publication_date=1990; citation_pages=714-717; citation_doi=10.1073/pnas.87.2.714; citation_id=CR12 citation_journal_title=Evolution; citation_title=A chloroplast-DNA phylogeny of the wild perennial relatives of soybean (Glycine subgenus Glycine): congruence with morphological and crossing groups; citation_author=JJ Doyle, JL Doyle, AHD Brown; citation_volume=44; citation_publication_date=1990; citation_pages=371-389; citation_doi=10.2307/2409415; citation_id=CR13 citation_journal_title=Amer J Bot; citation_title=Chloroplast DNA polymorphism and phylogeny in the B genome of Glycine subgenus Glycine (Leguminosae); citation_author=JJ Doyle, JL Doyle, AHD Brown; citation_volume=77; citation_publication_date=1990; citation_pages=772-782; citation_doi=10.2307/2444369; citation_id=CR14 citation_journal_title=Biol J Linn Soc; citation_title=Evolution of the perennial soybean polyploid complex (Glycine subgenus Glycine): a study of contrasts; citation_author=JJ Doyle, JL Doyle, JT Rauscher, AHD Brown; citation_volume=82; citation_publication_date=2004; citation_pages=583-597; citation_doi=10.1111/j.1095-8312.2004.00343.x; citation_id=CR15 citation_journal_title=Syst Biol; citation_title=A comparison of global, gene-specific, and relaxed clock methods in a comparative genomics framework: dating the polyploid history of soybean (Glycine max); citation_author=AN Egan, J Doyle; citation_volume=59; citation_publication_date=2010; citation_pages=534-547; citation_doi=10.1093/sysbio/syq041; citation_id=CR16 citation_journal_title=Gen Biol Evol; citation_title=Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution; citation_author=M Baidouri, O Panaud; citation_volume=5; citation_publication_date=2013; citation_pages=954-965; citation_doi=10.1093/gbe/evt025; citation_id=CR17 citation_journal_title=Plant Physiol Bioch; citation_title=Molecular analysis of Phaseolus vulgaris rDNA unit and characterization of a satellite DNA homologous to IGS subrepeats; citation_author=J Falquet, F Creusot, M Dron; citation_volume=35; citation_publication_date=1997; citation_pages=611-622; citation_id=CR18 citation_journal_title=Genetics; citation_title=A fluorescence in situ hybridization system for karyotyping soybean; citation_author=SD Findley, S Cannon, K Varala, J Du, J Ma, ME Hudson, J Birchler, G Stacey; citation_volume=185; citation_publication_date=2010; citation_pages=727-744; citation_doi=10.1534/genetics.109.113753; citation_id=CR19 citation_journal_title=G3 (Genes/Genomes/Genetics; citation_title=Fluorescence in situ hybridization—based karyotyping of soybean translocation lines; citation_author=SD Findley, AL Pappas, Y Cui, JA Birchler, RG Palmer, G Stacey; citation_volume=1; citation_publication_date=2011; citation_pages=117-129; citation_doi=10.1534/g3.111.000034; citation_id=CR20 citation_journal_title=Nucl Ac Res; citation_title=Cloning and characterization of ribosomal RNA genes from wheat and barley; citation_author=WL Gerlach, JR Bedbrook; citation_volume=7; citation_publication_date=1979; citation_pages=1869-1885; citation_doi=10.1093/nar/7.7.1869; citation_id=CR22 citation_journal_title=Plant Physiol; citation_title=Molecular and chromosomal evidence for allopolyploidy in soybean; citation_author=N Gill, S Findley, JG Walling, C Hans, J Ma, J Doyle, G Stacey, SA Jackson; citation_volume=151; citation_publication_date=2009; citation_pages=1167-1174; citation_doi=10.1104/pp.109.137935; citation_id=CR23 citation_journal_title=Aust J Bot; citation_title=Cytological and isozyme diversity in Glycine tomentella Hayata (Leguminosae); citation_author=JE Grant, AHD Brown, JP Grace; citation_volume=32; citation_publication_date=1984; citation_pages=665-677; citation_doi=10.1071/BT9840665; citation_id=CR24 citation_journal_title=Euphytica; citation_title=Each species of Glycine collected in Taiwan has a unique seed protein pattern; citation_author=JS Hsieh, KL Hsieh, YC Tsai, YI Hsing; citation_volume=118; citation_publication_date=2001; citation_pages=67-73; citation_doi=10.1023/A:1004075516984; citation_id=CR25 citation_journal_title=Bot Bull Acad Sinica; citation_title=The relationships of cultivated soybeans and their wild relatives collected from Taiwan—revealed by seed proteins; citation_author=YIC Hsing, KL Hsieh, YC Huang, JS Hsieh; citation_volume=36; citation_publication_date=1995; citation_pages=65-72; citation_id=CR26 citation_journal_title=J Plant Res; citation_title=Systematic status of the Glycine tomentella and G. tabacina species complexes (Fabaceae) based on ITS sequences of nuclear ribosomal DNA; citation_author=YLC Hsing, JS Hsieh, CI Peng, CH Chou, TY Chiang; citation_volume=114; citation_publication_date=2001; citation_pages=435-442; citation_doi=10.1007/PL00014009; citation_id=CR27 citation_journal_title=Plant Breed Rev; citation_title=The genomes of the Glycine ; citation_author=T Hymowitz, RJ Singh, KP Kollipara; citation_volume=16; citation_publication_date=1998; citation_pages=289-317; citation_id=CR28 citation_journal_title=Proc Nat Acad Sci USA; citation_title=Impacts of genetic bottlenecks on soybean genome diversity; citation_author=DL Hyten, Q Song, Y Zhu, I-Y Choi, RL Nelson, JM Costa, JE Specht, RC Shoemaker, PB Cregan; citation_volume=103; citation_publication_date=2006; citation_pages=16666-16671; citation_doi=10.1073/pnas.0604379103; citation_id=CR29 citation_journal_title=Crop Sci; citation_title=Toward a reference sequencing of the soybean genome: a multiagency effort; citation_author=SA Jackson, D Rokhsar, G Stacey, RC Shoemaker, J Schmutz, J Grimwood; citation_volume=46; citation_publication_date=2006; citation_pages=S55-S61; citation_id=CR30 citation_journal_title=Genome; citation_title=Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research; citation_author=J Jiang, BS Gill; citation_volume=49; citation_publication_date=2006; citation_pages=1057-1068; citation_doi=10.1139/g06-076; citation_id=CR31 citation_journal_title=BMC Plant Biol; citation_title=Evolution of ribosomal DNA-derived satellite repeat in tomato genome; citation_author=S-H Jo, D-H Koo, J Kim, C-G Hur, S Lee, T-J Yang, S-Y Kwon, D Choi; citation_volume=9; citation_publication_date=2009; citation_pages=42; citation_doi=10.1186/1471-2229-9-42; citation_id=CR32 citation_journal_title=Breed Sci; citation_title=DaizuBase, an integrated soybean genome database including BAC-based physical maps; citation_author=Y Katayose, H Kanamori, M Shimomura, H Ohyanagi, H Ikawa, H Minami, M Shibata, T Ito, K Kurita, K Ito, Y Tsubokura, A Kaga, JZ Wu, T Matsumoto, K Harada, T Sasaki; citation_volume=61; citation_publication_date=2012; citation_pages=661-664; citation_doi=10.1270/jsbbs.61.661; citation_id=CR33 citation_journal_title=Genetics; citation_title=RFLP mapping in soybean: association between marker loci and variation in quantitative traits; citation_author=P Keim, BW Diers, TC Olson, RC Shoemaker; citation_volume=126; citation_publication_date=1990; citation_pages=735-742; citation_id=CR34 citation_journal_title=Genome; citation_title=Genetic and cytogenetic analyses of the genome of Triticum-Monococcum.VIII. Localization of rDNAs and characterization of 5 s ribosomal-DNA genes; citation_author=NS Kim, J Kuspira, K Armstrong, R Bhambhani; citation_volume=36; citation_publication_date=1993; citation_pages=77-86; citation_doi=10.1139/g93-011; citation_id=CR35 citation_journal_title=Proc Nat Acad Sci USA; citation_title=Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome; citation_author=MY Kim, S Lee, K Van, TH Kim, SC Jeong, IY Choi, DS Kim, YS Lee, D Park, J Ma, WY Kim, BC Kim, S Park, KA Lee, DH Kim, KH Kim, JH Shin, YE Jang, K Do Kim, WX Liu, T Chaisan, YJ Kang, YH Lee, KH Kim, JK Moon, J Schmutz, SA Jackson, J Bhak, SH Lee; citation_volume=107; citation_publication_date=2010; citation_pages=22032-22037; citation_doi=10.1073/pnas.1009526107; citation_id=CR36 citation_journal_title=Theor Appl Genet; citation_title=A major satellite DNA of soybean is a 92-base-pairs tandem repeat; citation_author=A Kolchinsky, PM Gresshoff; citation_volume=90; citation_publication_date=1995; citation_pages=621-626; citation_doi=10.1007/BF00222125; citation_id=CR37 citation_journal_title=Genome; citation_title=Phylogenetic and genomic relationships in the genus Glycine Willd. based on sequences from the ITS region of nuclear rDNA; citation_author=KP Kollipara, RJ Singh, T Hymowitz; citation_volume=40; citation_publication_date=1997; citation_pages=57-68; citation_doi=10.1139/g97-008; citation_id=CR38 citation_journal_title=Cytogenet Genome Res; citation_title=Cytogenetics of festulolium (Festuca X Lolium hybrids); citation_author=D Kopecky, AJ Lukaszewski, J Dolezel; citation_volume=120; citation_publication_date=2008; citation_pages=370-383; citation_doi=10.1159/000121086; citation_id=CR39 citation_journal_title=J Hered; citation_title=FISH mapping of the 5S and 18S-28S rDNA loci in different species of Glycine ; citation_author=P Krishnan, VT Sapra, KM Soliman, A Zipf; citation_volume=92; citation_publication_date=2001; citation_pages=295-300; citation_doi=10.1093/jhered/92.3.295; citation_id=CR40 citation_journal_title=Chromosoma; citation_title=Satellite repeats in the functional centromere and pericentromeric heterochromatin of Medicago truncatula ; citation_author=O Kulikova, R Geurts, M Lamine, DJ Kim, DR Cook, J Leunissen, H Jong, BA Roe, T Bisseling; citation_volume=113; citation_publication_date=2004; citation_pages=276-283; citation_doi=10.1007/s00412-004-0315-3; citation_id=CR41 citation_journal_title=Nat Genet; citation_title=Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection; citation_author=HM Lam, X Xu, X Liu, W Chen, G Yang, FL Wong, MW Li, W He, N Qin, B Wang, J Min, X Guo, F Murat, BK Ham, Z Zhang, S Gao, M Huang, Y Xu, S Zhong, A Bombarely, LA Mueller, H Zhao, H He, Y Zhang, Z Zhang, S Huang, T Tan, E Pang, K Lin, Q Hu; citation_volume=42; citation_publication_date=2010; citation_pages=1053-1059; citation_doi=10.1038/ng.715; citation_id=CR42 citation_journal_title=Genetics; citation_title=Dynamic changes in the distribution of a satellite homologous to intergenic 26-18S rDNA spacer in the evolution of Nicotiana ; citation_author=KY Lim, K Skalicka, B Koukalova, RA Volkov, R Matyasek, V Hemleben, AR Leitch, A Kovarik; citation_volume=166; citation_publication_date=2004; citation_pages=1935-1946; citation_doi=10.1534/genetics.166.4.1935; citation_id=CR43 citation_journal_title=Genetics; citation_title=Pericentromeric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile; citation_author=JY Lin, BH Jacobus, P SanMiguel, JG Walling, Y Yuan, RC Shoemaker, ND Young, SA Jackson; citation_volume=170; citation_publication_date=2005; citation_pages=1221-1230; citation_doi=10.1534/genetics.105.041616; citation_id=CR44 citation_journal_title=Annal Bot; citation_title=Molecular cytogenetics of the genus Arabidopsis : in situ localization of rDNA sites, chromosome numbers and diversity in centromeric heterochromatin; citation_author=J Maluszynska, JS Heslopharrison; citation_volume=71; citation_publication_date=1993; citation_pages=479-484; citation_doi=10.1006/anbo.1993.1063; citation_id=CR45 citation_journal_title=Chromosome Res; citation_title=The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity; citation_author=M Morgante, I Jurman, L Shi, T Zhu, P Keim, JA Rafalski; citation_volume=5; citation_publication_date=1997; citation_pages=363-373; citation_doi=10.1023/A:1018492208247; citation_id=CR46 citation_journal_title=BMC Plant Bio; citation_title=Highly syntenic regions in the genomes of soybean, Medicago truncatula and Arabidopsis thaliana ; citation_author=J Mudge, S Cannon, P Kalo, G Oldroyd, B Roe, C Town, N Young; citation_volume=5; citation_publication_date=2005; citation_pages=15; citation_doi=10.1186/1471-2229-5-15; citation_id=CR47 citation_journal_title=A wild relative of soybean Crop Sci; citation_title= Glycine canescens F. J. Herm; citation_author=CA Newell, T Hymowitz; citation_volume=15; citation_publication_date=1975; citation_pages=879-881; citation_doi=10.2135/cropsci1975.0011183X001500060044x; citation_id=CR48 citation_journal_title=Am J Bot; citation_title=Hybridization in the Genus Glycine Subgenus Glycine Willd (Leguminosae, Papilionoideae); citation_author=CA Newell, T Hymowitz; citation_volume=70; citation_publication_date=1983; citation_pages=334-348; citation_doi=10.2307/2443241; citation_id=CR49 citation_journal_title=Genome; citation_title=Segmental duplications within the Glycine max genome revealed by fluorescence in situ hybridization of bacterial artificial chromosomes; citation_author=J Pagel, JG Walling, ND Young, RC Shoemaker, SA Jackson; citation_volume=47; citation_publication_date=2004; citation_pages=764-768; citation_doi=10.1139/g04-025; citation_id=CR50 citation_journal_title=J Hered; citation_title=Chromosome structure of the wild soybean—Accessions from China and the Soviet Union of Glycine soja Sieb. & Zucc; citation_author=RG Palmer, KE Newhouse, RA Graybosch, X Delannay; citation_volume=78; citation_publication_date=1987; citation_pages=243-247; citation_id=CR51 citation_journal_title=Theor Appl Genet; citation_title=Extensive ribosomal DNA amplification during Andean common bean (Phaseolus vulgaris L.) evolution; citation_author=A Pedrosa-Harand, CCS Almeida, M Mosiolek, M Blair, D Schweizer, M Guerra; citation_volume=112; citation_publication_date=2006; citation_pages=924-933; citation_doi=10.1007/s00122-005-0196-8; citation_id=CR52 citation_journal_title=Proc Nat Acad Sci USA; citation_title=Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization; citation_author=D Pinkel, T Straume, JW Gray; citation_volume=83; citation_publication_date=1986; citation_pages=2934-2938; citation_doi=10.1073/pnas.83.9.2934; citation_id=CR53 citation_journal_title=Chromosome Res; citation_title=Activity of the En/Spm-like transposons in meiosis as a base for chromosome repatterning in a small, isolated, peripheral population of Aegilops speltoides Tausch; citation_author=O Raskina, A Belyayev, E Nevo; citation_volume=12; citation_publication_date=2004; citation_pages=153-161; citation_doi=10.1023/B:CHRO.0000013168.61359.43; citation_id=CR54 citation_journal_title=Proc Nat Acad Sci USA; citation_title=Quantum speciation in Aegilops: Molecular cytogenetic evidence from rDNA cluster variability in natural populations; citation_author=O Raskina, A Belyayev, E Nevo; citation_volume=101; citation_publication_date=2004; citation_pages=14818-14823; citation_doi=10.1073/pnas.0405817101; citation_id=CR55 citation_journal_title=Cytogenet Genome Res; citation_title=Repetitive DNA and chromosomal rearrangements: speciation-related events in plant genomes; citation_author=O Raskina, JC Barber, E Nevo, A Belyayev; citation_volume=120; citation_publication_date=2008; citation_pages=351-357; citation_doi=10.1159/000121084; citation_id=CR56 citation_title= ; citation_inbook_title=Wild crop relatives: genomic and breeding resources: legume crops and forages; citation_publication_date=2011; citation_pages=83-116; citation_id=CR57; citation_author=MB Ratnaparkhe; citation_author=RJ Singh; citation_author=JJ Doyle; citation_publisher=Springer citation_journal_title=BMC Genom; citation_title=Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing; citation_author=J Schlueter, J-Y Lin, S Schlueter, I Vasylenko-Sanders, S Deshpande, J Yi, M O’Bleness, B Roe, R Nelson, B Scheffler, S Jackson, R Shoemaker; citation_volume=8; citation_publication_date=2007; citation_pages=330; citation_doi=10.1186/1471-2164-8-330; citation_id=CR58 citation_journal_title=Nature; citation_title=Genome sequence of the palaeopolyploid soybean; citation_author=J Schmutz, SB Cannon, J Schlueter, J Ma, T Mitros, W Nelson, DL Hyten, Q Song, JJ Thelen, J Cheng, D Xu, U Hellsten, GD May, Y Yu, T Sakurai, T Umezawa, MK Bhattacharyya, D Sandhu, B Valliyodan, E Lindquist, M Peto, D Grant, S Shu, D Goodstein, K Barry, M Futrell-Griggs, B Abernathy, J Du, Z Tian, L Zhu, N Gill, T Joshi, M Libault, A Sethuraman, X-C Zhang, K Shinozaki, HT Nguyen, RA Wing, P Cregan, J Specht, J Grimwood, D Rokhsar, G Stacey, RC Shoemaker, SA Jackson; citation_volume=463; citation_publication_date=2010; citation_pages=178-183; citation_doi=10.1038/nature08670; citation_id=CR59 citation_journal_title=Chromosoma; citation_title=In situ hybridization confirms jumping nucleolus organizing regions in Allium ; citation_author=I Schubert, U Wobus; citation_volume=92; citation_publication_date=1985; citation_pages=143-148; citation_doi=10.1007/BF00328466; citation_id=CR60 citation_journal_title=Crop Sci; citation_title=Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean; citation_author=AM Sebolt, RC Shoemaker, BW Diers; citation_volume=40; citation_publication_date=2000; citation_pages=1438-1444; citation_doi=10.2135/cropsci2000.4051438x; citation_id=CR61 citation_journal_title=Amer. J. Bot.; citation_title=The wild side of a major crop—Soybean’s perennial cousins from down under; citation_author=S Sherman-Brotles, A Bombarely, AF Powell, JL Doyle, AN Egan, JE Coate, JF Doyle; citation_volume=101; citation_publication_date=2014; citation_pages=1651-1665; citation_doi=10.3732/ajb.1400121; citation_id=CR62 citation_journal_title=J Hered; citation_title=Soybean chromosome painting: A strategy for somatic cytogenetics; citation_author=L Shi, T Zhu, M Morgante, JA Rafalski, P Keim; citation_volume=87; citation_publication_date=1996; citation_pages=308-313; citation_doi=10.1093/oxfordjournals.jhered.a023004; citation_id=CR63 citation_journal_title=Genetics; citation_title=Genome duplication in soybean (Glycine subgenus soja); citation_author=RC Shoemaker, K Polzin, J Labate, J Specht, EC Brummer, T Olson, N Young, V Concibido, J Wilcox, JP Tamulonis, G Kochert, HR Boerma; citation_volume=144; citation_publication_date=1996; citation_pages=329-338; citation_id=CR64 citation_journal_title=Theor Appl Genet; citation_title=The genomic relationships among six wild perennial species of the genus Glycine subgenus Glycine Willd; citation_author=RJ Singh, T Hymowitz; citation_volume=71; citation_publication_date=1985; citation_pages=211-230; citation_id=CR65 Singh RJ, Hymowitz T (1987) Taxonomy and speciation. Wilcox, Soybeans: Improvements, Production, and Uses. Agronomy Monograph, pp 23–48 citation_journal_title=Theor Appl Genet; citation_title=The genomic relationship between Glycine max (L.) Merr. and G. soja Sieb. and Zucc. as revealed by pachytene chromosome analysis; citation_author=RJ Singh, T Hymowitz; citation_volume=76; citation_publication_date=1988; citation_pages=705-711; citation_doi=10.1007/BF00303516; citation_id=CR67 citation_journal_title=Theor Appl Genet; citation_title=Distribution of rDNA loci in the genus Glycine Willd; citation_author=RJ Singh, HH Kim, T Hymowitz; citation_volume=103; citation_publication_date=2001; citation_pages=212-218; citation_doi=10.1007/s001220100591; citation_id=CR68 citation_journal_title=Biochimie; citation_title=Structure and organization of ribosomal DNA; citation_author=AK Srivastava, D Schlessinger; citation_volume=73; citation_publication_date=1991; citation_pages=631-638; citation_doi=10.1016/0300-9084(91)90042-Y; citation_id=CR69 citation_journal_title=Genetics; citation_title=Highly condensed potato pericentromeric heterochromatin contains rDNA-related tandem repeats; citation_author=RM Stupar, JQ Song, AL Tek, ZK Cheng, FG Dong, JM Jiang; citation_volume=162; citation_publication_date=2002; citation_pages=1435-1444; citation_id=CR70 citation_journal_title=J Jap Bot; citation_title=Taxonomic studies on Glycine of Taiwan; citation_author=Y Tateishi, H Ohashi; citation_volume=67; citation_publication_date=1992; citation_pages=127-147; citation_id=CR71 citation_journal_title=Chromosome Res; citation_title=Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon; citation_author=AL Tek, K Kashihara, M Murata, K Nagaki; citation_volume=18; citation_publication_date=2010; citation_pages=337-347; citation_doi=10.1007/s10577-010-9119-x; citation_id=CR72 citation_journal_title=Bot Bull Acad Sin; citation_title= Glycine formosana Hosokawa in Taiwan: pod morphology, allozyme, and DNA polymorphism; citation_author=FS Thseng, SJ Tsai, J Abe, ST Wu; citation_volume=40; citation_publication_date=1999; citation_pages=251-257; citation_id=CR73 citation_journal_title=Aust Syst Bot; citation_title=Three new species of Glycine (Fabaceae: Phaseolae) from north-western Australia, with notes on amphicarpy in the genus; citation_author=M Tindale, L Craven; citation_volume=1; citation_publication_date=1988; citation_pages=399-410; citation_doi=10.1071/SB9880399; citation_id=CR74 Tsai YC (2006) Study on phylogenetic relationship of Glycine species collected in Taiwan. Doctoral Dissertation, National Taiwan University citation_journal_title=Chinese Agro J; citation_title=Wild soybean and its relatives collected in Taiwan; citation_author=YC Tsai, YIC Hsing, CI Chung, JS Hsieh; citation_volume=11; citation_publication_date=2001; citation_pages=217-230; citation_id=CR76 citation_journal_title=Curr Biol; citation_title=Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation; citation_author=MC Ungerer, SC Strakosh, Y Zhen; citation_volume=16; citation_publication_date=2006; citation_pages=R872-R873; citation_doi=10.1016/j.cub.2006.09.020; citation_id=CR77 citation_journal_title=Plant Mol Biol; citation_title=Genomic organization and evolution of the soybean SB92 satellite sequence; citation_author=M Vahedian, L Shi, T Zhu, R Okimoto, K Danna, P Keim; citation_volume=29; citation_publication_date=1995; citation_pages=857-862; citation_doi=10.1007/BF00041174; citation_id=CR78 citation_journal_title=Plant Sci; citation_title=Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice; citation_author=RK Varshney, R Sigmund, A Börner, V Korzun, N Stein, ME Sorrells, P Langridge, A Graner; citation_volume=168; citation_publication_date=2005; citation_pages=195-202; citation_doi=10.1016/j.plantsci.2004.08.001; citation_id=CR79 citation_journal_title=Cytometry; citation_title=Standardization of high-resolution flow cytometric DNA analysis by the simultaneous use of chicken and trout red blood cells as internal reference standards; citation_author=LL Vindelov, IJ Christensen, NI Nissen; citation_volume=3; citation_publication_date=1983; citation_pages=328-331; citation_doi=10.1002/cyto.990030504; citation_id=CR80 citation_journal_title=Mol Biol Evol; citation_title=Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum ; citation_author=RA Volkov, NV Borisjuk, II Panchuk, D Schweizer, V Hemleben; citation_volume=16; citation_publication_date=1999; citation_pages=311-320; citation_doi=10.1093/oxfordjournals.molbev.a026112; citation_id=CR81 citation_journal_title=Genetics; citation_title=Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps; citation_author=JG Walling, R Shoemaker, N Young, J Mudge, S Jackson; citation_volume=172; citation_publication_date=2006; citation_pages=1893-1900; citation_doi=10.1534/genetics.105.051466; citation_id=CR82 citation_journal_title=J Bacteri; citation_title=Genome sequence of the soybean symbiont Sinorhizobium fredii HH103; citation_author=S Weidner, A Becker, I Bonilla, S Jaenicke, J Lloret, I Margaret, A Puhler, JE Ruiz-Sainz, S Schneiker-Bekel, R Szczepanowski, JM Vinardell, S Zehner, M Gottfert; citation_volume=194; citation_publication_date=2012; citation_pages=1617-1618; citation_doi=10.1128/JB.06729-11; citation_id=CR83