Discovery of a novel mastrevirus and alphasatellite-like circular DNA in dragonflies (Epiprocta) from Puerto Rico

Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, 25, 3389, 10.1093/nar/25.17.3389 Briddon, 2010, Turnip curly top virus, a highly divergent geminivirus infecting turnip in Iran, Virus Research, 152, 169, 10.1016/j.virusres.2010.05.016 Briddon, 2006, Subviral agents associated with plant single-stranded DNA viruses, Virology, 344, 198, 10.1016/j.virol.2005.09.042 Briddon, 1998, Comparison of a beet curly top virus isolate originating from the old world with those from the new world, European Journal of Plant Pathology, 104, 77, 10.1023/A:1008669532438 Brown, 2011, Geminivirdae, 251 Casado, 2004, Isolation and characterization of subgenomic DNAs encapsidated in “single” T=1 isometric particles of maize streak virus, Virology, 323, 164, 10.1016/j.virol.2004.02.014 Edgar, 2004, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, 32, 1792, 10.1093/nar/gkh340 Fargette, 2006, Molecular ecology and emergence of tropical plant viruses, Annual Review of Phytopathology, 44, 235, 10.1146/annurev.phyto.44.120705.104644 Fiallo-Olive, 2012, A novel class of DNA satellites associated with New World begomoviruses, Virology, 426, 1, 10.1016/j.virol.2012.01.024 Geering, 2012, Paspalum striate mosaic virus: an Australian mastrevirus from Paspalum dilatatum, Archives of Virology, 157, 193, 10.1007/s00705-011-1129-2 Guindon, 2010, New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0, Systematic Biology, 59, 307, 10.1093/sysbio/syq010 Gutierrez, 1999, Geminivirus DNA replication, Cellular and Molecular Life Sciences, 56, 313, 10.1007/s000180050433 Hadfield, 2011, Bromus catharticus striate mosaic virus: a new mastrevirus infecting Bromus catharticus from Australia, Archieves of Virology, 156, 335, 10.1007/s00705-010-0872-0 Hadfield, 2012, Molecular characterisation of dicot-infecting mastreviruses from Australia, Virus Research, 166, 13, 10.1016/j.virusres.2012.02.024 Kraberger, 2012, Australian monocot-infecting mastrevirus diversity rivals that in Africa, Virus Research, 169, 127, 10.1016/j.virusres.2012.07.018 Krenz, 2012, Complete genome sequence of a new circular DNA virus from grapevine, Journal of Virology, 86, 7715, 10.1128/JVI.00943-12 Kreuze, 2009, Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses, Virology, 388, 1, 10.1016/j.virol.2009.03.024 Kumar, 2012, A novel mastrevirus infecting wheat in India, Archives of Virology, 10.1007/s00705-012-1359-y Lawry, 2009, A novel sugarcane-infecting mastrevirus from South Africa, Archieves of Virology, 154, 1699, 10.1007/s00705-009-0490-x Le, 2008, An improved general amino acid replacement matrix, Molecular Biology and Evolution, 25, 1307, 10.1093/molbev/msn067 Loconsole, 2012, Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae, Virology, 432, 162, 10.1016/j.virol.2012.06.005 Macdonald, 1988, Characterization of a subgenomic DNA isolated from triticum aestivum plants infected with wheat dwarf virus, Journal of General Virology, 69, 1339, 10.1099/0022-1317-69-6-1339 Martin, 2010, RDP3: a flexible and fast computer program for analyzing recombination, Bioinformatics, 26, 2462, 10.1093/bioinformatics/btq467 Martin, 2011, Eragrostis minor streak virus: an Asian streak virus in Africa, Archieves of Virology, 156, 1299, 10.1007/s00705-011-1026-8 Ng, 2011, Exploring the diversity of plant DNA viruses and their satellites using vector-enabled metagenomics on whiteflies, PLoS ONE, 6, e19050, 10.1371/journal.pone.0019050 Oluwafemi, 2008, A new African streak virus species from Nigeria, Archieves of Virology, 153, 1407, 10.1007/s00705-008-0123-9 Pande, 2012, A novel maize-infecting mastrevirus from La Reunion Island, Archieves of Virology, 157, 1617, 10.1007/s00705-012-1314-y Paprotka, 2010, The first DNA 1-like alpha satellites in association with New World begomoviruses in natural infections, Virology, 404, 148, 10.1016/j.virol.2010.05.003 Romay, 2010, Association of an atypical alphasatellite with a bipartite New World begomovirus, Archieves of Virology, 155, 1843, 10.1007/s00705-010-0760-7 Rosario, 2012, Diverse circular single-stranded DNA viruses discovered in dragonflies (Odonata: Epiprocta), Journal of General Virology, 93, 2729, 10.1099/vir.0.045948-0 Rosario, 2012, A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics, Archives of Virology, 157, 1851, 10.1007/s00705-012-1391-y Rosario, 2011, Dragonfly cyclovirus, a novel single-stranded DNA virus discovered in dragonflies (Odonata: Anisoptera), Journal of General Virology, 92, 1302, 10.1099/vir.0.030338-0 Shepherd, 2008, Novel sugarcane streak and sugarcane streak Reunion mastreviruses from southern Africa and La Reunion, Archieves of Virology, 153, 605, 10.1007/s00705-007-0016-3 Tamura, 2011, MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Molecular Biology and Evolution, 28, 2731, 10.1093/molbev/msr121 Thomas, 2010, Two novel mastreviruses from chickpea (Cicer arietinum) in Australia, Archieves of Virology, 155, 1777, 10.1007/s00705-010-0763-4 van der Walt, 2009, Rapid host adaptation by extensive recombination, Journal of General Virology, 90, 734, 10.1099/vir.0.007724-0 Varsani, 2008, Panicum streak virus diversity is similar to that observed for maize streak virus, Archieves of Virology, 153, 601, 10.1007/s00705-007-0020-7 Varsani, 2008, Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen, Journal of General Virology, 89, 2063, 10.1099/vir.0.2008/003590-0 Varsani, 2009, Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography, Virology Journal, 6, 194, 10.1186/1743-422X-6-194 Varsani, 2009, A highly divergent South African geminivirus species illuminates the ancient evolutionary history of this family, Virology Journal, 6, 36, 10.1186/1743-422X-6-36 Yazdi, 2008, Genome characterization and genetic diversity of beet curly top Iran virus: a geminivirus with a novel nonanucleotide, Virus Genes, 36, 539, 10.1007/s11262-008-0224-2