Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.)

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic Local Alignment Search Tool. J Mol Biol 215:403–410

Anderson JA, Churchill GA, Sutrique JE, Tanksley SD, Sorrells ME (1993) Optimizing parental selection for genetic linkage maps. Genome 36:181–186

Bell CJ, Ecker JR (1994) Assignment of 30 microsatellite loci to the linkage map ofArabidopsis. Genomics 19:137–144

Blair M, McCouch SR (1995) The development of diagnostic markers for the bacterial blight resistance gene,xa-5. Rice Genetics III. International Rice Research Institute (IRRI), Los Banos, Philippines, in press

Causse M, Ghesquiere A (1991) Prospective use ofOryza longistaminata for rice breeding. Rice Genetics II (Proceedings of the Second International Rice Genotics Symposium, 14–18 May 1990). International Rice Research Institute, PO Box 933, Manila 1099, Philippines, pp 81–89

Causse M, Fulton TM, Cho YG, Ahn SN, Wu K, Xiao J, Chunwongse J, Yu Z, Ronald PC, Harrington SB, Second GA, McCouch SR, Tanksley SD (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138:1251–1274

Cho YG, Eun MY, McCouch SR, Chae YA (1994) The semidwarf gene,sd-1, of rice (Oryza sativa L.) II. Molecular mapping and marker-assisted selection. Theor Appl Genet 89:54–59

Devos KM, Bryan GJ, Collins AJ, Stephenson P, Gale MD (1995) Application of two microsatellite sequences in wheat storage proteins as molecular markers. Theor Appl Genet 90:247–252

Dietrich WF, Miller JC, Steen RG, Merchant M, Damron D, Nahf R, Gross A, Joyce DC, Wessel M, Dredge RD, Marquis A, Stein LD, Goodman N, Page DC, Lander ES (1994) A genetic map of mouse with 4,006 simple sequence length polymorphisms. Nature Genet 7:220–246

Feinberg AP, Vogelstein B (1983) A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132:6–13

Guiderdoni E, Galinato E, Luistro J, Vergara G (1992) Anther culture oftropical japonica × indica hybrids of rice (Oryza sativa L.). Euphytica 62:219–224

Gyapay G, Morissette J, Vignal A, Dib C, Fizames C, Millasseau P, Marc S, Bernardi G, Lathrop M, Weissenbach J (1994) The 1993–94 Généthon human genetic linkage map. Nature Genet 7:247–249

Huang N, McCouch SR, Mew MT, Parco A, Guiderdoni E (1994) Development of an RFLP map from a double haploid population in rice. RGN 11:134–137

IRRI (1966) 1966 Annual Report. International Rice Research Institute, PO Box 933, Manila 1099, Philippines

IRRI (1994) 1994 Program Report. International Rice Research Institute, PO Box 933, Manila 1099, Philippines

Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin SY, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Kirihara T, Hayasaka K, Miyao A, Monna L, Zhong HS, Tamura Y, Wang ZX, Momma Y, Umehara Y, Yano M, Sasaki T, Minobe Y (1994) A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genet 8:365–375

McCouch SR, Doerge RW (1995) QTL mapping in rice. Trends Genet 11:482–487

Mohan M, Nair S, Bentur JS, Rao UP, Bennett J (1994) RFLP and RAPD mapping of the riceGm 2 gene that confers resistance to biotype 1 of gall midge (Orseolia oryzae). Theor Appl. Genet. 87:782–788

Panaud O, Chen X, McCouch SR (1995) Frequency of microsatellite sequences in rice (Oryza sativa L.). Genome 38:1170–1176

Partharsarathy N (1972) Rice breeding in tropical Asia up to 1960. rice breeding. International Rice Research Institute, PO Box 933, Manila 1099, Philippines, pp 5–29

Reed PW, Davies JL, Copeman JB, Benett ST, Palmer SM, Pritchard LE, Gough SCL, Kawaguchi Y, Cordell HJ, Balfour KM, Jenkins SC, Powell EE, Vignal A, Todd JA (1994) Chromosome-specific microsatellite sets for fluorescence-based, semi-automated genome mapping. Nature Genet 7:390–395

Roeder M, Plaschke J, Koenig SU, Boerner A, Sorrells ME, Tanksley SD, Ganal MW (1995) Abundance, variability and chromosomal location of microsatellites in wheat. Mol Gen Genet 246:327–333

Ronald PC, Albano B, Tabien R, Abenes L, Wu K, McCouch S, Tanksley SD (1992) Genetic and physical analysis of the rice bacterial blight disease resistance locus,Xa21. Mol Gen Genet 236:113–120

Rongwen J, Akkaya MS, Bhagwat AA, Lavi U, Cregan PB (1995) The use of microsatellite DNA markers for soybean genotype identification. Theor Appl Genet 90:43–48

Shimano T, Inoue T, Antonio BA, Kajiya I, Shomura A, Lin SY, Kuboki Y, Nagamura Y, Kurata N, Yano M, Sasaki Y (1995) Extensive conservation in linkage alignment of RFLP markers between rice chromosome 11 and 12. USDA Plant Genome III Meeting, Jan. 15–19, 1995, San Diego, Calif. Poster No. 212

Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. a laboratory manual (2nd edn) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

Wang Z, Weber JL, Zhong G, and Tanksley SD (1994) Survey of plant short tandem DNA repeats. Theor Appl Genet 88:1–6.

Wu KS, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241:225–235

Xiao J, Li J, Yuan L, Tanksley SD (1995) Dominance is the major genetic basis of heterosis in rice as revealed by QTL analysis using molecular markers. Genetics 140:745–754

Yanagihara S, McCouch SR, Ishikawa K, Ogi Y, Maruyama K, Ikehashi H (1995) Molecular analysis of the inheritance of theS-5 locus, conferring wide compatibility inIndica/Japonica hybrids of rice (O. sativa L.). Theor Appl Genet 90:182–188

Yang GP, Saghai Maroof MA, Xu CG, Zhang Q, Biyashev RM (1994) Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Mol Gen Genet 245:187–194