DNA methylation within the I.4 promoter region correlates with CYPl19A1 gene expression in human ex vivo mature omental and subcutaneous adipocytes

Springer Science and Business Media LLC - Tập 14 - Trang 1-8 - 2013
Joshua R Lewis1,2, Tegan J McNab1,2, Lawrence J Liew1,2, Jeremy Tan3, Phillip Hudson4, Jenny Z Wang1,2, Richard L Prince1,2
1School of Medicine and Pharmacology, University of Western Australia, Nedlands, Australia
2Department of Endocrinology and Diabetes, Sir Charles Gairdner Hospital, Nedlands, Australia
3Department of General Surgery, Sir Charles Gairdner Hospital, Nedlands, Australia
4QIAGEN Pty. Ltd, Doncaster, Australia

Tóm tắt

DNA methylation at specific CpG sites within gene promoter regions is known to regulate transcriptional activity in vitro. In human adipose tissue, basal transcription of the aromatase (CYP19A1) gene is driven primarily by the I.4 promoter however the role of DNA methylation in regulating expression in ex vivo mature adipocytes is unknown. This observational study reports the correlation of DNA methylation within the I.4 promoter region of human mature subcutaneous and omental adipocytes with aromatase expression and body composition measures. Omental and subcutaneous adipose tissue were collected from 25 obese subjects undergoing bariatric surgery and the mature adipocyte fraction purified. DNA methylation status of 5 CpG sites within a 550 base pair region encompassing the transcription start site (TSS) of promoter I.4 was determined using pyrosequencing. Relative aromatase and I.4 promoter specific mRNA expression was determined by qRT-PCR and whole body DXA performed in 25 participants. Site-specific DNA methylation varied from 21 ± 10% to 81 ± 11%. In omental adipocytes percentage methylation at the I.4.1 and I.4.2 CpG sites, but not other nearby sites, was negatively correlated with relative aromatase mRNA expression (R = - 0.52, P = 0.017 and R = - 0.52, P = 0.015). In contrast subcutaneous adipocytes percentage DNA methylation at the I.4.3 and I.4.5 sites were positively correlated with relative aromatase mRNA expression (R = 0.47, P = 0.022 and R = 0.55, P = 0.004). In a small subset of patients DNA methylation at the I.4.5 site was also positively correlated with whole body lean mass, bone mineral content and density. In conclusion in mature adipocytes, the primary source of estradiol after menopause, increasing DNA methylation was correlated with aromatase mRNA expression and thus estradiol biosynthesis. These findings support a tissue-specific epigenetic regulation of the basal promoter activity in mature adipocytes; the mechanisms influencing this regulation and its physiological role remain to be elucidated.

Tài liệu tham khảo

Chen SA, Besman MJ, Sparkes RS, Zollman S, Klisak I, Mohandas T, Hall PF, Shively JE: Human aromatase: cDNA cloning, Southern blot analysis, and assignment of the gene to chromosome 15. DNA. 1988, 7 (1): 27-38. 10.1089/dna.1988.7.27.

Sebastian S, Takayama K, Shozu M, Bulun SE: Cloning and characterization of a novel endothelial promoter of the human CYP19 (aromatase P450) gene that is up-regulated in breast cancer tissue. Mol Endocrinol. 2002, 16 (10): 2243-2254. 10.1210/me.2002-0123.

Sebastian S, Bulun SE: A highly complex organization of the regulatory region of the human CYP19 (aromatase) gene revealed by the Human Genome Project. J Clin Endocrinol Metab. 2001, 86 (10): 4600-4602. 10.1210/jc.86.10.4600.

Toda K, Shizuta Y: Molecular cloning of a cDNA showing alternative splicing of the 5′-untranslated sequence of mRNA for human aromatase P-450. Eur J Biochem. 1993, 213 (1): 383-389. 10.1111/j.1432-1033.1993.tb17772.x.

Zhao Y, Mendelson CR, Simpson ER: Characterization of the sequences of the human CYP19 (aromatase) gene that mediate regulation by glucocorticoids in adipose stromal cells and fetal hepatocytes. Mol Endocrinol. 1995, 9 (3): 340-349. 10.1210/me.9.3.340.

Knower KC, To SQ, Simpson ER, Clyne CD: Epigenetic mechanisms regulating CYP19 transcription in human breast adipose fibroblasts. Mol Cell Endocrinol. 2010, 321 (2): 123-130. 10.1016/j.mce.2010.02.035.

Singal R, Ginder GD: DNA methylation. Blood. 1999, 93 (12): 4059-4070.

Chiang PK, Gordon RK, Tal J, Zeng GC, Doctor BP, Pardhasaradhi K, McCann PP: S-Adenosylmethionine and methylation. FASEB J. 1996, 10 (4): 471-480.

Riviere G, Lienhard D, Andrieu T, Vieau D, Frey BM, Frey FJ: Epigenetic regulation of somatic angiotensin-converting enzyme by DNA methylation and histone acetylation. Epigenetics. 2011, 6 (4): 478-489. 10.4161/epi.6.4.14961.

Ball MP, Li JB, Gao Y, Lee JH, LeProust EM, Park IH, Xie B, Daley GQ, Church GM: Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat Biotechnol. 2009, 27 (4): 361-368. 10.1038/nbt.1533.

Laurent L, Wong E, Li G, Huynh T, Tsirigos A, Ong CT, Low HM, Kin Sung KW, Rigoutsos I, Loring J, et al: Dynamic changes in the human methylome during differentiation. Genome Res. 2010, 20 (3): 320-331. 10.1101/gr.101907.109.

Vanselow J, Selimyan R, Furbass R: DNA methylation of placenta-specific Cyp19 promoters of cattle and sheep. Exp Clin Endocrinol Diabetes. 2008, 116 (7): 437-442. 10.1055/s-2008-1058083.

Spitschak M, Vanselow J: Bovine large luteal cells show increasing de novo DNA methylation of the main ovarian CYP19A1 promoter P2. Gen Comp Endocrinol. 2012, 178 (1): 37-45. 10.1016/j.ygcen.2012.04.001.

Hankinson SE, Willett WC, Manson JE, Colditz GA, Hunter DJ, Spiegelman D, Barbieri RL, Speizer FE: Plasma sex steroid hormone levels and risk of breast cancer in postmenopausal women. J Natl Cancer Inst. 1998, 90 (17): 1292-1299. 10.1093/jnci/90.17.1292.

Riancho JA, Sanudo C, Valero C, Pipaon C, Olmos JM, Mijares V, Fernandez-Luna JL, Zarrabeitia MT: Association of the aromatase gene alleles with BMD: epidemiological and functional evidence. J Bone Miner Res. 2009, 24 (10): 1709-1718. 10.1359/jbmr.090404.

Shigematsu M, Watanabe H, Sugihara H: Proliferation and differentiation of unilocular fat cells in the bone marrow. Cell struct Funct. 1999, 24 (2): 89-100. 10.1247/csf.24.89.

Jeong JH, Jung YK, Kim HJ, Jin JS, Kim HN, Kang SM, Kim SY, van Wijnen AJ, Stein JL, Lian JB, et al: The gene for aromatase, a rate-limiting enzyme for local estrogen biosynthesis, is a downstream target gene of Runx2 in skeletal tissues. Mol Cell Biol. 2010, 30 (10): 2365-2375. 10.1128/MCB.00672-09.

Agarwal VR, Ashanullah CI, Simpson ER, Bulun SE: Alternatively spliced transcripts of the aromatase cytochrome P450 (CYP19) gene in adipose tissue of women. J Clin Endocrinol Metab. 1997, 82 (1): 70-74. 10.1210/jc.82.1.70.

Tost J, Gut IG: DNA methylation analysis by pyrosequencing. Nat Protoc. 2007, 2 (9): 2265-2275. 10.1038/nprot.2007.314.

Deaton AM, Bird A: CpG islands and the regulation of transcription. Genes Dev. 2011, 25 (10): 1010-1022. 10.1101/gad.2037511.

Furbass R, Selimyan R, Vanselow J: DNA methylation and chromatin accessibility of the proximal Cyp 19 promoter region 1.5/2 correlate with expression levels in sheep placentomes. Mol Reprod Dev. 2008, 75 (1): 1-7. 10.1002/mrd.20756.

Furbass R, Said HM, Schwerin M, Vanselow J: Chromatin structure of the bovine Cyp19 promoter 1.1. DNaseI hypersensitive sites and DNA hypomethylation correlate with placental expression. Eur J Biochem. 2001, 268 (5): 1222-1227. 10.1046/j.1432-1327.2001.01988.x.

Kim MS, Kondo T, Takada I, Youn MY, Yamamoto Y, Takahashi S, Matsumoto T, Fujiyama S, Shirode Y, Yamaoka I, et al: DNA demethylation in hormone-induced transcriptional derepression. Nature. 2009, 461 (7266): 1007-1012. 10.1038/nature08456.

Luco RF, Allo M, Schor IE, Kornblihtt AR, Misteli T: Epigenetics in alternative pre-mRNA splicing. Cell. 2011, 144 (1): 16-26. 10.1016/j.cell.2010.11.056.

Harrington MA, Jones PA, Imagawa M, Karin M: Cytosine methylation does not affect binding of transcription factor Sp1. Proc Natl Acad Sci USA. 1988, 85 (7): 2066-2070. 10.1073/pnas.85.7.2066.

Chen K, Ou XM, Wu JB, Shih JC: Transcription factor E2F-associated phosphoprotein (EAPP), RAM2/CDCA7L/JPO2 (R1), and simian virus 40 promoter factor 1 (Sp1) cooperatively regulate glucocorticoid activation of monoamine oxidase B. Mol Pharmacol. 2011, 79 (2): 308-317. 10.1124/mol.110.067439.

The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2350/14/87/prepub