Comprehensive characterization of SBP genes revealed their role under multifactorial stress combinations in dragon fruit (Selenicereus undatus L.)

Agarwal, 2020, Comparative study of the SBP-box gene family in rice siblings, J. Bio. Sci., 45, 1 Attar, 2022, Nutritional analysis of red-purple and white-fleshed pitaya (Hylocereus) species, Mol, 27, 808, 10.3390/molecules27030808 Bhat, 2016, Fruits of tropical climates: dietary importance and health benefits, 144 Cai, 2019, Regulatory Sequences of Pear. The Pear Genome Chen, 2020, TBtools: an integrative toolkit developed for inter active analyses of big biological data, Mol. Plant, 13, 1194, 10.1016/j.molp.2020.06.009 Chen, 2022, Pitaya genome and multiomics database (PGMD): a comprehensive and integrative resource of Selenicereus undatus, Genes (Basel), 4, 13 El Rasafi, 2022, Cadmium stress in plants: A critical review of the effects, mechanisms, and tolerance strategies, Crit. Rev. Environ. Sci. Technol., 52, 675, 10.1080/10643389.2020.1835435 Ersahin, 2022, Endometrial injury concurrent with hysteroscopy increases the expression of Leukaemia inhibitory factor: a preliminary study, Reprod. Biol. Endocrinol., 20, 1, 10.1186/s12958-021-00877-z Faraji, 2020, The AP2/ERF gene family in Triticum durum: genome-wide identification and expression analysis under drought and salinity stresses, Genes (Basel), 11, 12, 10.3390/genes11121464 Fatima, 2021, Genome-wide identification of stress-associated proteins (SAPs) encoding A20/AN1 zinc finger in almond (Prunus dulcis) and their differential expression during fruit development, Plants, 11, 1, 10.3390/plants11010117 Filichkin, 2018, Identification of transcription factors from NF-Y, NAC, and SPL families responding to osmotic stress in multiple tomato varieties, Plant Sci., 274, 441, 10.1016/j.plantsci.2018.06.021 Goodstein, 2011, Phytozome: a comparative platform for green plant genomics, Nucleic Acids Res., 40, D1178, 10.1093/nar/gkr944 Guo, 2021, Genome-wide analysis of poplar SQUAMOSA-promoter-binding protein (SBP) family under salt stress, Forests, 12, 4, 10.3390/f12040413 Haider, 2021, Cadmium toxicity in plants: impacts and remediation strategies, Ecotoxicol. Environ. Saf., 211, 211, 10.1016/j.ecoenv.2020.111887 He, 2022, Genome-wide identification, phylogeny and expression analysis of the SPL gene family and its important role in salt stress in Medicago sativa L, BMC Plant Biol., 22, 1, 10.1186/s12870-022-03678-7 He, 2023, The NtSPL gene family in Nicotiana tabacum: genome-wide investigation and expression analysis in response to cadmium stress, Genes (Basel), 14, 1, 10.3390/genes14010183 Islam, 2019, Genome-wide identification of glutathione S-transferase gene family in pepper, its classification, and expression profiling under different anatomical and environmental conditions, Sci. Rep., 9, 1, 10.1038/s41598-019-45320-x Kul, 2019, Melatonin: Role in Increasing Plant Tolerance in Abiotic Stress Conditions, IntechOpen Lan, 2019, OsSPL10, a SBP-box gene, plays a dual role in salt tolerance and trichome formation in rice (Oryza sativa L.), G3-GENES Genom. Genet., 9, 4107, 10.1534/g3.119.400700 Letunic, 2019, Bork, P. Interactive tree of life (iTOL) v4: recent updates and new developments, Nucleic Acids Res., 47, W256, 10.1093/nar/gkz239 Li, 2021, Genome-wide identification and functional exploration of SBP-box gene family in black pepper (Piper nigrum L.), Genes (Basel), 12, 11, 10.3390/genes12111740 Li, 2020, Genome-wide identification, characterization, and expression patterns analysis of the SBP-box gene family in wheat (Triticum aestivum L.), Sci. Rep., 10, 17250, 10.1038/s41598-020-74417-x Li, 2022, Genome-wide identification and expression analysis of SBP-box gene family reveal their involvement in hormone response and abiotic stresses in Chrysanthemum nankingense, PeerJ, 10, e14241, 10.7717/peerj.14241 Liu, 2020, Genome-wide analysis, characterization, and expression profile of the basic leucine zipper transcription factor family in pineapple, Int. J. Genomics 2020, 1-14. Liu, 2018, Genome-wide analysis of BES1 genes in Gossypium revealed their evolutionary conserved roles in brassinosteroid signaling, Sci. China Life Sci., 61, 1566, 10.1007/s11427-018-9412-x Mandal, 2021, Micro-RNA based gene regulation: a potential way for crop improvements, Plant Gene, 27, 27, 10.1016/j.plgene.2021.100312 Nazir, 2022, Clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated genome-editing toolkit to enhance salt stress tolerance in rice and wheat, Physiol. Plant., 74, 2 Pan, 2017, Genome-wide identification and expression analysis of SBP-like transcription factor genes in Moso Bamboo (Phyllostachys edulis), BMC Genome, 18, 1, 10.1186/s12864-017-3882-4 Pardo-Hernández, 2020, ROS and NO regulation by melatonin under abiotic stress in plants, Antioxid. Act., 9, 11 Rai, 2019, Heavy metals in food crops: health risks, fate, mechanisms, and management, Environ. Int., 25, 365, 10.1016/j.envint.2019.01.067 Raza, 2023, Developing drought-smart, ready-to-grow future crops, Plant Genome, 16, e20279, 10.1002/tpg2.20279 Raza, 2023, Nano-enabled stress-smart agriculture: can nanotechnology deliver drought and salinity-smart crops?, J. Sustain. Agric., 2, 189 Raza, 2022, Melatonin-mediated temperature stress tolerance in plants, GM Crops Food, 13, 196, 10.1080/21645698.2022.2106111 Salehi, 2019, Melatonin in medicinal and food plants: occurrence, bioavailability, and health potential for humans, Cells, 8, 7, 10.3390/cells8070681 Song, 2021, Genome-wide characterization and expression analysis of the SBP-Box gene family in sweet orange (Citrus sinensis), Int. J. Mol. Sci., 22, 16, 10.3390/ijms22168918 Tamura, 2021, MEGA11: molecular evolutionary genetics analysis version 11, Mol. Biol. Evol., 38, 3022, 10.1093/molbev/msab120 Tian, 2003, Genetic control of developmental changes induced by disruption of Arabidopsis histone deacetylase 1 (AtHD1) expression, Genetics, 165, 399, 10.1093/genetics/165.1.399 Wakchaure, 2023, Long-term response of dragon fruit (Hylocereus undatus) to transformed rooting zone of a shallow soil improving yield, storage quality and profitability in a drought prone semi-arid agro-ecosystem, Saudi J. Biol. Sci., 30, 1, 10.1016/j.sjbs.2022.103497 Wang, 2023, Identification of Alfalfa SPL gene family and expression analysis under biotic and abiotic stresses, Sci. Rep., 13, 1 Wei, 2017, Transcriptional changes in litchi (Litchi chinensis Sonn.) inflorescences treated with uniconazole, PLoS ONE, 12, 10.1371/journal.pone.0176053 Xie, 2021, Genome-wide characterization of R2R3-MYB transcription factors in pitaya reveals a R2R3-MYB repressor HuMYB1 involved in fruit ripening through regulation of betalain biosynthesis by repressing betalain biosynthesis-related genes, Cells, 10, 8, 10.3390/cells10081949 Xu, 2020, Roles of transcription factor SQUAMOSA promoter binding protein-like gene family in papaya (Carica papaya) development and ripening, Genomics, 112, 2734, 10.1016/j.ygeno.2020.03.009 Zaman, 2023, Genome-wide identification and expression profiling of APX gene family under multifactorial stress combinations and melatonin-mediated tolerance in pitaya, Sci. Horti., 321, 321, 10.1016/j.scienta.2023.112312 Zaman, 2023, New possibilities for trait improvement via mobile CRISPR-RNA, Trends Biotechnol., 41, 1335, 10.1016/j.tibtech.2023.05.001 Zaman, 2019, CRISPR/Cas9-mediate multiplex genome editing of JAGGED gene in Brassica napus L, Biomolecules, 9, 9, 10.3390/biom9110725 Zaman, 2023, Characterizing the HMA gene family in dragon fruit (Selenicereus undatus L.) and revealing their response to multifactorial stress combinations and melatonin-mediated tolerance, S. Afr. J. Bot., 163, 145, 10.1016/j.sajb.2023.10.039 Zaman, 2019, Genome editing opens a new era of genetic improvement in polyploid crops, Crop J., 7, 141, 10.1016/j.cj.2018.07.004 Zaman, 2022, Genome-wide identification and expression profiling of the GRAS gene family in pitaya (Selenicereus undatus L.), Biology (Basel), 12, 11 Zhang, 2019, The miRNA-mediated post-transcriptional regulation of maize in response to high temperature, Int. J. Mol. Sci., 20, 7 Zhu, 2023, Comparative transcriptome analysis reveals the function of SlPRE2 in multiple phytohormones biosynthesis, signal transduction, and stomatal development in tomato, Plant Cell Rep., 42, 921, 10.1007/s00299-023-03001-0