Complete genome sequence of Lysinibacillus sphaericus LMG 22257, a strain with ureolytic activity inducing calcium carbonate precipitation
Tài liệu tham khảo
Achal, 2009, Strain improvement of Sporosarcina pasteurii for enhanced urease and calcite production, J. Ind. Microbiol. Biotechnol., 36, 981, 10.1007/s10295-009-0578-z
Chin, 2013, Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data, Nat. Methods, 10, 563, 10.1038/nmeth.2474
De Muynck, 2010, Microbial carbonate precipitation in construction materials: a review, Ecol. Eng., 36, 118, 10.1016/j.ecoleng.2009.02.006
De Muynck, 2013, Influence of temperature on the effectiveness of a biogenic carbonate surface treatment for limestone conservation, Appl. Microbiol. Biotechnol., 97, 1335, 10.1007/s00253-012-3997-0
Dick, 2006, Bio-deposition of a calcium carbonate layer on degraded limestone by Bacillus species, Biodegradation, 17, 357, 10.1007/s10532-005-9006-x
Finn, 2008, The Pfam protein families database, Nucleic Acids Res., 36, D281, 10.1093/nar/gkm960
Finn, 2011, HMMER web server: interactive sequence similarity searching, Nucleic Acids Res., 39, W29, 10.1093/nar/gkr367
Hammes, 2003, A novel approach to calcium removal from calcium-rich industrial wastewater, Water Res., 37, 699, 10.1016/S0043-1354(02)00308-1
Hausinger, 2001, Urease: a paradigm for protein-assisted metallocenter assembly, ASM News, 67, 78
Hyatt, 2010, Prodigal: prokaryotic gene recognition and translation initiation site identification, BMC Bioinform., 11, 10.1186/1471-2105-11-119
Kanehisa, 2008, KEGG for linking genomes to life and the environment, Nucleic Acids Res., 36, D480, 10.1093/nar/gkm882
Markowitz, 2009, IMG ER: a system for microbial genome annotation expert review and curation, Bioinformatics, 25, 2271, 10.1093/bioinformatics/btp393
Micallef, 2016, Biocalcifying Bacillus subtilis cells effectively consolidate deteriorated Globigerina limestone, J. Ind. Microbiol. Biotechnol., 43, 941, 10.1007/s10295-016-1768-0
Nawrocki, 2013, Infernal 1.1: 100-fold faster RNA homology searches, Bioinformatics, 29, 2933, 10.1093/bioinformatics/btt509
Pereira, 2009, Complexity of cyanobacterial exopolysaccharides: composition, structures, inducing factors and putative genes involved in their biosynthesis and assembly, FEMS Microbiol. Rev., 33, 917, 10.1111/j.1574-6976.2009.00183.x
Reeves, 1993, Evolution of Salmonella O antigen variation by interspecific gene transfer on a large scale, Trends Genet., 9, 17, 10.1016/0168-9525(93)90067-R
Reeves, 1996, Bacterial polysaccharide synthesis and gene nomenclature, Trends Microbiol., 4, 495, 10.1016/S0966-842X(97)82912-5
Sarayu, 2014, Exploration on the biotechnological aspect of the ureolytic bacteria for the production of the cementitious materials—a review, Appl. Biochem. Biotechnol., 172, 2308, 10.1007/s12010-013-0686-0
Selengut, 2007, TIGRFAMs and genome properties: tools for the assignment of molecular function and biological process in prokaryotic genomes, Nucleic Acids Res., 35, D260, 10.1093/nar/gkl1043
Tatusov, 2003, The COG database: an updated version includes eukaryotes, BMC Bioinform., 4, 41, 10.1186/1471-2105-4-41
Yan, 2016, Complete genome sequence of the Sporosarcina psychrophila DSM 6497, a psychrophilic Bacillus strain that mediates the calcium carbonate precipitation, J. Biotechnol., 226, 14, 10.1016/j.jbiotec.2016.03.036
Zhou, 1996, DNA recovery from soils of diverse composition, Appl. Environ. Microbiol., 62, 316, 10.1128/AEM.62.2.316-322.1996