Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds
Tóm tắt
Từ khóa
Tài liệu tham khảo
Bak, 1987, A novel type of energy metabolism involving fermentation of inorganic sulphur compounds., Nature, 326, 891, 10.1038/326891a0
Finster, 1998, Elemental sulfur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov., a new anaerobic bacterium isolated from marine surface sediment., Appl Environ Microbiol, 64, 119, 10.1128/AEM.64.1.119-125.1998
Thamdrup, 1993, Bacterial disproportionation of elemental sulfur coupled to chemical reduction of iron or manganese., Appl Environ Microbiol, 59, 101, 10.1128/AEM.59.1.101-108.1993
Fike, 2008, Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach., ISME J, 2, 749, 10.1038/ismej.2008.39
Jørgensen, 1990, A thiosulfate shunt in the sulfur cycle of marine sediments., Science, 249, 152, 10.1126/science.249.4965.152
Canfield, 1998, Isotope Fractionation and Sulfur Metabolism by Pure and Enrichment Cultures of Elemental Sulfur-Disproportionating Bacteria., Limnol Oceanogr, 43, 253, 10.4319/lo.1998.43.2.0253
Philippot, 2007, Early archaean microorganisms preferred elemental sulfur, not sulfate., Science, 317, 1534, 10.1126/science.1145861
Finster, 2008, Microbiological disproportionation of inorganic sulfur compounds., J Sulfur Chem, 29, 281, 10.1080/17415990802105770
Milucka, 2012, Zero-valent sulphur is a key intermediate in marine methane oxidation., Nature, 491, 541, 10.1038/nature11656
Frederiksen, 2004, The transformation of inorganic sulfur compounds and the assimilation of organic and inorganic carbon by the sulfur disproportionating bacterium Desulfocapsa sulfoexigens., Antonie van Leeuwenhoek, 85, 141, 10.1023/B:ANTO.0000020153.82679.f4
Frederiksen, 2003, Sulfite-oxido-reductase is involved in the oxidation of sulfite in Desulfocapsa sulfoexigens during disproportionation of thiosulfate and elemental sulfur., Biodegradation, 14, 189, 10.1023/A:1024255830925
Janssen, 1996, Disproportionation of inorganic sulfur compounds by the sulfate-reducing bacterium Desulfocapsa thiozymogenes gen. nov., sp. nov., Arch Microbiol, 166, 184, 10.1007/s002030050374
2000, Validation of publication of new names and new combinations previously effectively published outside the IJSEM., Int J Syst Evol Microbiol, 50, 1699, 10.1099/00207713-50-5-1699
Field, 2008, The minimum information about a genome sequence (MIGS) specification., Nat Biotechnol, 26, 541, 10.1038/nbt1360
Woese, 1990, Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya., Proc Natl Acad Sci USA, 87, 4576, 10.1073/pnas.87.12.4576
2006, Validation List No. 107. List of new names and new combinations previously effectively, but not validly, published., Int J Syst Evol Microbiol, 56, 1, 10.1099/ijs.0.64188-0
1997, Validation List no. 61. Validation of the publication of new names and new combinations previously effectively published outside the IJSB., Int J Syst Bacteriol, 47, 601, 10.1099/00207713-47-2-601
2000, Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Validation List no. 76., Int J Syst Evol Microbiol, 50, 1699, 10.1099/00207713-50-5-1699
Stamatakis, 2005, RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees., Bioinformatics, 21, 456, 10.1093/bioinformatics/bti191
Pagani, 2011, Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T)., Stand Genomic Sci, 4, 100, 10.4056/sigs.1613929
Rabus, 2004, The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments., Environ Microbiol, 6, 887, 10.1111/j.1462-2920.2004.00665.x
Markowitz, 2009, IMG ER: a system for microbial genome annotation expert review and curation., Bioinformatics, 25, 2271, 10.1093/bioinformatics/btp393
Bland, 2007, CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats., BMC Bioinformatics, 8, 209, 10.1186/1471-2105-8-209
Anonymous. 2009 PILER Genomic repeat analysis software. <http://www.drive5.com/pilercr>.
Lagesen, 2007, RNAmmer: consistent and rapid annotation of ribosomal RNA genes., Nucleic Acids Res, 35, 3100, 10.1093/nar/gkm160
Hyatt, 2010, Prodigal: prokaryotic gene recognition and translation initiation site identification., BMC Bioinformatics, 11, 119, 10.1186/1471-2105-11-119
Widdel, 1982, Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids II. Incomplete oxidation of propionate by Desulfobulbus propionicus gen. nov., sp. nov., Arch Microbiol, 131, 360, 10.1007/BF00411187
Bradley, 2011, Revisiting the dissimilatory sulfate reduction pathway., Geobiology, 9, 446, 10.1111/j.1472-4669.2011.00292.x
Jormakka, 2008, Molecular mechanism of energy conservation in polysulfide respiration., Nat Struct Mol Biol, 15, 730, 10.1038/nsmb.1434
Quatrini, 2009, Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidans., BMC Genomics, 10, 394, 10.1186/1471-2164-10-394
Oremland, 1988, Use of specific inhibitors in biogeochemistry and microbial ecology., Adv Microb Ecol, 10, 285, 10.1007/978-1-4684-5409-3_8
Ragsdale, 1991, Enzymology of the Acetyl-CoA pathway of CO2 fixation., Crit Rev Biochem Mol Biol, 26, 261, 10.3109/10409239109114070
Länge, 1988, Oxidative and reductive acetyl CoA/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum - 1. Characterization and metabolic function of the cellular tetrahydropterin., Arch Microbiol, 151, 77, 10.1007/BF00444673
Thauer, 1988, Citric-acid cycle, 50 years on., Eur J Biochem, 176, 497, 10.1111/j.1432-1033.1988.tb14307.x
Gussin, 1986, Regulation of nitrogen fixation genes., Annu Rev Genet, 20, 567, 10.1146/annurev.ge.20.120186.003031
Pino, 2006, The assimilatory nitrate reduction system of the phototrophic bacterium Rhodobacter capsulatus E1F1., Biochem Soc Trans, 34, 127, 10.1042/BST0340127
Cypionka, 2000, Oxygen Respiration by Desulfovibrio Species., Annu Rev Microbiol, 54, 827, 10.1146/annurev.micro.54.1.827
Porter, 2011, Signal processing in complex chemotaxis pathways., Nat Rev Microbiol, 9, 153, 10.1038/nrmicro2505