Comparative metagenomics reveals alterations in the soil bacterial community driven by N-fertilizer and Amino 16® application in lettuce

Pieterse, 2016, The soil-borne supremacy, Trends Plant Sci., 21, 171, 10.1016/j.tplants.2016.01.018 Kazan, 2016, The link between flowering time and stress tolerance, J. Exp. Bot., 67, 47, 10.1093/jxb/erv441 Bevivino, 2014, Soil bacterial community response to differences in agricultural management along with seasonal changes in a Mediterranean region, PLoS One, 9, 10.1371/journal.pone.0105515 Rhoades, 1996, Salinity: electrical conductivity and total dissolved solids, 417 Trim Galore!, The Babraham Institute Martin, 2011, Cutadapt removes adapter sequences from high-throughput sequencing reads, EMBnet.Journal, 17, 10, 10.14806/ej.17.1.200 FastQC, The Babraham Institute Haas BJ. Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, et al. De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity. Nat Protocol.;8(8):1494–1512. doi: http://dx.doi.org/10.1038/nprot.2013.084 (2013). Gregory Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods