CAPTURING RNA-DEPENDENT PATHWAYS FOR CRYO-EM ANALYSIS
Tài liệu tham khảo
Richardson, 1991, Preventing the synthesis of unused transcripts by Rho factor, Cell, 64, 1047, 10.1016/0092-8674(91)90257-Y
Richardson, 2002, Rho-dependent termination and ATPases in transcript termination, Biochim Biophys Acta, 1577, 251, 10.1016/S0167-4781(02)00456-6
Gao, 2003, Study of the structural dynamics of the E coli 70S ribosome using real-space refinement, Cell, 113, 789, 10.1016/S0092-8674(03)00427-6
Opalka, 2010, Complete structural model of Escherichia coli RNA polymerase from a hybrid approach, PLoS Biology, 8
Frank, 2009, Single-particle reconstruction of biological macromolecules in electron microscopy–30 years, Q Rev Biophys, 42, 139, 10.1017/S0033583509990059
Zhou, 2008, Towards atomic resolution structural determination by single-particle cryo-electron microscopy, Curr Opin Struct Biol, 18, 218, 10.1016/j.sbi.2008.03.004
Cheng, 2009, The advent of near-atomic resolution in single-particle electron microscopy, Annu Rev Biochem, 78, 723, 10.1146/annurev.biochem.78.070507.140543
Wolf, 2010, Subunit interactions in bovine papillomavirus, Proc Natl Acad Sci U S A, 107, 6298, 10.1073/pnas.0914604107
Leschziner, 2007, Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method, Proc Natl Acad Sci U S A, 104, 4913, 10.1073/pnas.0700706104
Leschziner, 2007, Visualizing flexibility at molecular resolution: analysis of heterogeneity in single-particle electron microscopy reconstructions, Annu Rev Biophys Biomol Struct, 36, 43, 10.1146/annurev.biophys.36.040306.132742
Kelly, 2008, Monolayer purification: a rapid method for isolating protein complexes for single-particle electron microscopy, Proc Natl Acad Sci U S A, 105, 4703, 10.1073/pnas.0800867105
Kelly, 2008, The Affinity Grid: a pre-fabricated EM grid for monolayer purification, J Mol Biol, 382, 423, 10.1016/j.jmb.2008.07.023
Ohi, 2004, Negative Staining and Image Classification – Powerful Tools in Modern Electron Microscopy, Biol Proced Online, 6, 23, 10.1251/bpo70
Frank, 1996, SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields, J Struct Biol, 116, 190, 10.1006/jsbi.1996.0030
Goddard, 2007, Visualizing density maps with UCSF Chimera, J Struct Biol, 157, 281, 10.1016/j.jsb.2006.06.010
Klaholz, 2003, Structure of the Escherichia coli ribosomal termination complex with release factor 2, Nature, 421, 90, 10.1038/nature01225
Taylor, 1992, Formation of 2-D paracrystals of F-actin on phospholipid layers mixed with quaternary ammonium surfactants, J Struct Biol, 108, 140, 10.1016/1047-8477(92)90013-Z
Taylor, 1993, Projection image of smooth muscle alpha-actinin from two-dimensional crystals formed on positively charged lipid layers, J Mol Biol, 230, 196, 10.1006/jmbi.1993.1136
Taylor, 1999, Structural studies of cytoskeletal protein arrays formed on lipid monolayers, J Struct Biol, 128, 75, 10.1006/jsbi.1999.4167
Kelly, 2010, Strategy for the use of affinity grids to prepare non-His-tagged macromolecular complexes for single-particle electron microscopy, J Mol Biol, 400, 675, 10.1016/j.jmb.2010.05.045
Miller, 1970, Visualization of bacterial genes in action, Science, 169, 392, 10.1126/science.169.3943.392
Melby, 1998, The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge, J Cell Biol, 142, 1595, 10.1083/jcb.142.6.1595
Loyola, 2001, Reconstitution of recombinant chromatin establishes a requirement for histone-tail modifications during chromatin assembly and transcription, Genes Dev, 15, 2837, 10.1101/gad.937401
Paull, 2001, Direct DNA binding by Brca1, Proc Natl Acad Sci U S A, 98, 6086, 10.1073/pnas.111125998
French, 2003, In exponentially growing Saccharomyces cerevisiae cells, rRNA synthesis is determined by the summed RNA polymerase I loading rate rather than by the number of active genes, Mol Cell Biol, 23, 1558, 10.1128/MCB.23.5.1558-1568.2003
Frank, 2006, xiv
Taylor, 2008, Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the future, J Struct Biol, 163, 214, 10.1016/j.jsb.2008.06.004