An insight into advances in fisheries biology, genetics and genomics of African tilapia species of interest in aquaculture

Abban, 2004, Socio-economic importance of tilapia in West Africa, Biodiversity, Management and Utilisation of West African Fishes, WorldFish Center Conference Proceedings, 1 Abban, 2004, Biodiversity, management and utilization of West African fishes, WorldFish Center Conference Proceedings, 63 ADB, 2005 Adebo, 2008, Economic analysis of contribution of tilapia production and marketing to gender empowerment in ondo and Ekiti states, Nigeria, 8th International Symposium on Tilapia in Aquaculture, 657 Adépo-Gourène, 1998, Morphological and genetic differentiation of West African populations of sarotherodon melanotheron rüppell, 1852 (teleostei, cichlidae), 189 Adépo-Gourène, 2006, Genetic identification of hybrids between two autochthonous tilapia species, Tilapia zillii and Tilapia guineensis, in the man-made lake Ayamé, Aquat. Living Resour., 19, 239, 10.1051/alr:2006024 Agnèse, 1997, Genetic differentiation among natural populations of the Nile tilapia Oreochromis niloticus (Teleostei, Cichlidae), Heredity, 79, 88, 10.1038/hdy.1997.126 Agresti, 2000, Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci, Aquaculture, 185, 43, 10.1016/S0044-8486(99)00335-X Ambali, 2004, Genetic improvement with specific reference to tilapia genetic resources in Africa and their use in aquaculture- potential benefi ts and risks, WorldFish Center Conference Proceedings, 11 Amoussou, 2017 Amoussou, 2014, Improving aquaculture production in the Kou valley, Burkina Faso. Agric. Innov. Sustain. Dev., 4, 187 Amoussou, 2016, Caractéristiques biologiques et zootechniques des tilapias africains Oreochromis niloticus (Linnaeus, 1758) et Sarotherodon melanotheron Rüppell, 1852 : Une revue, Int. J. Biol. Chem. Sci., 10, 1869, 10.4314/ijbcs.v10i4.35 Amoussou, 2017, An overview of fish restocking into fresh and brackish inland waterways of Benin (West Africa), Int. J. Fish. Aquat. Stud., 5, 164 Amoussou, 2018, Genetic characterization of Benin’s wild populations of Sarotherodon melanotheron melanotheron Rüppell, 1852, Mol. Biol. Rep., 45, 1981, 10.1007/s11033-018-4354-x Ansah, 2014, Genetically-improved tilapia strains in Africa: potential benefits and negative impacts, Sustainability, 6, 3697, 10.3390/su6063697 Appleyard, 2001, Individual heterozygosity levels and relative growth performance in Oreochromis niloticus (L.) cultured under Fijian conditions, Aquac. Res., 32, 287, 10.1046/j.1365-2109.2001.00557.x Arai, 2001, Genetic improvement of aquaculture finfish species by chromosome manipulation techniques in Japan, Aquaculture, 197, 205, 10.1016/S0044-8486(01)00588-9 Askari, 2013, Application of molecular markers in fisheries and aquaculture, Sci. J. Anim. Sci., 2, 82 Attipoe, 2006 Avarre, 2014, Analysis of the black-chinned tilapia Sarotherodon melanotheron heudelotii reproducing under a wide range of salinities: from RNA-seq to candidate genes, Mol. Ecol. Resour., 14, 139, 10.1111/1755-0998.12148 Avise, 2000 Bakhoum, 2009, Genetic evidence for natural hybridization between nile Tilapia (Oreochromis niloticus; Linnaeus, 1757) and blue Tilapia (Oreochromis aureus; Steindachner, 1864) in Lake Edku, Egypt, Glob. Vet., 3, 91 Baldauf, 2013, Sex-specific conditional mating preferences in a cichlid fish: implications for sexual conflict, Behav. Ecol. Sociobiol. (Print), 67, 1179, 10.1007/s00265-013-1543-4 Balloux, 2004, Heterozygote excess in small populations and the heterozygote-excess effective population size, Evolution (N Y), 58, 1891 Balloux, 2002, The estimation of population differentiation with microsatellite markers, Mol. Ecol., 11, 155, 10.1046/j.0962-1083.2001.01436.x Balloux, 2004, Does heterozygosity estimate inbreeding in real populations?, Mol. Ecol., 13, 3021, 10.1111/j.1365-294X.2004.02318.x Baras, 2001, Effect of water temperature on survival, growth and phenotypic sex of mixed XX–XY progenies of Nile tilapia Oreochromis niloticus, Aquaculture, 192, 187, 10.1016/S0044-8486(00)00452-X Barberousse, 2010, 79 Bardakci, 1994, Application of the RAPD technique in tilapia fish: species and subspecies identification, Heredity, 73, 117, 10.1038/hdy.1994.110 Barlow, 2000 Baroiller, 1995, Temperature and sex chromosomes govern sex ratios of the mouthbrooding Cichlid fish (Oreochromis niloticus), J. Exp. Zool., 273, 216, 10.1002/jez.1402730306 Bartley, 2001, The use of inter-specific hybrids in aquaculture and fisheries, Rev. Fish Biol. Fish., 10, 325, 10.1023/A:1016691725361 Barton, 2001, The role of hybridization in evolution, Mol. Ecol., 10, 551, 10.1046/j.1365-294x.2001.01216.x Beaven, 2012, Aspects of a monosex population of Oreochromis niloticus fingerlings produced using 17-α methyl testosterone hormone, J. Aquac. Res. Dev., 03, 1, 10.4172/2155-9546.1000132 Behrends, 1996, Cryorésistance chez les femelles tilapias pratiquant l’incubation buccale : estimation de l’héritabilité et corrélation avec les performances de croissance à des températures suboptimales, 282 Bentzen, 1993, Nucleotide sequence and evolutionary conservation of a minisatellite variable number tandem repeat cloned from Atlantic salmon, Salmo salar, Genome, 36, 271, 10.1139/g93-038 Bentzen, 1991, Cloning of hypervariable minisatellite and simple sequence microsatellite repeats for DNA fingerprinting of important aquacultural species of Salmonids and Tilapia, in: DNA Fingerprinting: approaches and Applications, Birkhäuser Basel, 243 Bernatchez, 1998, Comparative phylogeography of Nearctic and Palearctic fishes, Mol. Ecol., 7, 431, 10.1046/j.1365-294x.1998.00319.x Bezault, 2005 Bezault, 2007, Sex determination and temperature-induced sex differentiation in three natural populations of Nile tilapia (Oreochromis niloticus) adapted to extreme temperature conditions, Aquaculture, 272, 15, 10.1016/j.aquaculture.2007.07.227 Bezault, 2011, Spatial and temporal variation in population genetic structure of wild Nile tilapia (Oreochromis niloticus) across Africa, BMC Genet., 12, 1, 10.1186/1471-2156-12-102 Bezault, 2012, Analysis of the meiotic segregation in intergeneric hybrids of tilapias, Int. J. Evol. Biol. Article ID, 1 Birkeland, 2005, The importance in fishery management of leaving the big ones, Trends Ecol. Evol. (Amst.), 20, 356, 10.1016/j.tree.2005.03.015 Birky, 2001, The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models, Annu. Rev. Genet., 35, 125, 10.1146/annurev.genet.35.102401.090231 Böhne, 2016, Variations on a theme: genomics of sex determination in the cichlid fish Astatotilapia burtoni, BMC Genomics, 17, 1, 10.1186/s12864-016-3178-0 Brawand, 2014, The genomic substrate for adaptive radiation in African cichlid fish, Nature, 513, 375, 10.1038/nature13726 Brinez, 2011, Genetic diversity of six populations of red hybrid tilapia, using microsatellites genetic markers, Rev. MVZ Córdoba, 16, 2491 Brown, 2003, Nuclear DNA, 458 Carleton, 2002, Rapid isolation of CA microsatellites from the tilapia genome, Anim. Genet., 33, 140, 10.1046/j.1365-2052.2002.00817.x Carter, 1991, The application of DNA fingerprinting in the analysis of gynogenesis in tilapia, Aquaculture, 95, 41, 10.1016/0044-8486(91)90071-E Castro, 2003, Gynogenesis assessment using microsatellite genetic markers in turbot (Scopthalmus maximus), Mar. Biotechnol., 5, 584, 10.1007/s10126-003-0004-x Chenuil, 2006, Choosing the right molecular genetic markers for studying biodiversity: from molecular evolution to practical aspects, Genetica, 127, 101, 10.1007/s10709-005-2485-1 Chew, 2002, Molecular and cytogenetic analysis of the telomeric (TTAGGG)n repetitive sequences in the Nile tilapia, Oreochromis niloticus (Teleostei: cichlidae), Chromosoma, 111, 45, 10.1007/s00412-002-0187-3 Chistiakov, 2006, Microsatellites and their genomic distribution, evolution, function and applications: a review with special reference to fish genetics, Aquaculture, 255, 1, 10.1016/j.aquaculture.2005.11.031 Cnaani, 2011, Improving salinity tolerance in tilapias: past experience and future prospects, Isr. J. Aquac., 63, 1 Cnaani, 2000, Cold tolerance of tilapia species and hybrids, Aquac. Int., 8, 289, 10.1023/A:1009299109614 Cnaani, 2002, Mapping the transferrin gene in tilapia, Anim. Genet., 33, 72, 10.1046/j.1365-2052.2002.0742e.x Cnaani, 2003, Detection of a chromosomal region with two quantitative trait loci, affecting cold tolerance and fish size, in an F2 tilapia hybrid, Aquaculture, 223, 117, 10.1016/S0044-8486(03)00163-7 Cnaani, 2004, Genome-scan analysis for quantitative trait loci in an F2 tilapia hybrid, Mol. Genet. Genomics, 272, 162, 10.1007/s00438-004-1045-1 Crispo, 2008, Population genetic structure across dissolved oxygen regimes in an African cichlid fish, Mol. Ecol., 17, 2134, 10.1111/j.1365-294X.2008.03729.x D’Amato, 2007, Hybridization and phylogeography of the Mozambique tilapia Oreochromis mossambicus in southern Africa evidenced by mitochondrial and microsatellite DNA genotyping, Conserv. Genet., 8, 475, 10.1007/s10592-006-9186-x De Meeûs, 2012 De Meeus, 2006, Molecular epidemiology of clonal diploids: a quick overview and a short DIY (do it yourself) notice, Infect. Genet. Evol., 6, 163, 10.1016/j.meegid.2005.02.004 De Meeûs, 2007, Population genetics and molecular epidemiology or how to “débusquer la bête, Infect. Genet. Evol., 7, 308, 10.1016/j.meegid.2006.07.003 De Silva, 1997, Genetic variation in tilapia populations in man-made reservoirs in Sri Lanka, Aquac. Int., 5, 339, 10.1023/A:1018364107415 Desprez, 2003, Production of a high percentage of male offspring with a natural androgen, 11β-hydroxyandrostenedione (11βOHA4), in Florida red tilapia, Aquaculture, 216, 55, 10.1016/S0044-8486(02)00276-4 Devlin, 2002, Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences, Aquaculture, 208, 191, 10.1016/S0044-8486(02)00057-1 Dudgeon, 2006, Freshwater biodiversity: importance, threats, status and conservation challenges, Biol. Rev. Camb. Philos. Soc., 81, 163, 10.1017/S1464793105006950 Dudgeon, 2012, A review of the application of molecular genetics for fisheries management and conservation of sharks and rays, J. Fish Biol., 80, 1789, 10.1111/j.1095-8649.2012.03265.x Dunz, 2013, Molecular phylogeny and revised classification of the haplotilapiine cichlid fishes formerly referred to as ‘“Tilapia, Mol. Phylogenet. Evol., 68, 64, 10.1016/j.ympev.2013.03.015 Ellegren, 2004, Microsatellites: simple sequences with complex evolution, Nat. Rev. Genet., 5, 435, 10.1038/nrg1348 El-Sayed, 2012, Effects of phytoestrogens on sex reversal of Nile tilapia (Oreochromis niloticus) larvae fed diets treated with 17α-Methyltestosterone, Aquaculture, 360–361, 58, 10.1016/j.aquaculture.2012.07.010 Estoup, 1998, Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta), Mol. Ecol., 7, 339, 10.1046/j.1365-294X.1998.00362.x Ezaz, 2004, Sex ratios in the progeny of androgenetic and gynogenetic YY male Nile tilapia, Oreochromis niloticus L, Aquaculture, 232, 205, 10.1016/j.aquaculture.2003.08.001 Falk, 2004, Genetic diversity of the nile tilapia oreochromis niloticus (teleostei, cichlidae) from the Volta system in Ghana, 13 Falk, 2000, Genetic characterization of West African populations of sarotherodon melanotheron (teleostei, cichlidae), 8 Falk, 2003, Phylogeographic patterns in populations of the black-chinned tilapia complex (Teleostei, Cichlidae) from coastal areas in West Africa: support for the refuge zone theory, Mol. Phylogenet. Evol., 27, 81, 10.1016/S1055-7903(02)00369-X Falk, 2004, Genetic diversity of West African lagoon tilapia and its implications for fisheries, aquaculture and biodiversity conservation: case studies on sarotherodon melanotheron, sarotherodon nigripinus and tilapia guineensis, 6 FAO (Food and Agriculture Organization of the United Nations), 2010 FAO (Food and Agriculture Organization of the United Nations), 2012 FAO (Food and Agriculture Organization of the United Nations), 2014 FAO (Food and Agriculture Organization of the United Nations), 2018 Felip, 2001, Induction of triploidy and gynogenesis in teleost fish with emphasis on marine species, Genetica, 111, 175, 10.1023/A:1013724322169 Ferguson, 1995, The application of molecular markers to the study and conservation of fish populations, with special reference to Salmo, J. Fish Biol., 47, 103, 10.1111/j.1095-8649.1995.tb06048.x Fjalestad, 2005, Breeding strategies, 145 Foll, 2010, Estimating population structure from AFLP amplification intensity, Mol. Ecol., 19, 4638, 10.1111/j.1365-294X.2010.04820.x Froese, 2015 Gaffney, 1994, Heterosis and heterozygote deficiencies in marine bivalves: more light?, 146 Gennotte, 2014, The sensitive period for male-to-female sex reversal begins at the embryonic stage in the Nile tilapia and is associated with the sexual genotype, Mol. Reprod. Dev., 81, 1146, 10.1002/mrd.22436 Gibson, 2004, 1 Goldschmidt, 1996 Gourène, 1994, Différentiation génétique de 20 populations d’oreochromis niloticus (linnaeus, 1758) Gourène, 1999, Evaluation de la diversité ichtyologique d’un bassin ouest-africain aprés la construction d’un barrage, Cybium, 23, 147 Griffiths, 2013 Gum, 2005, Mitochondrial and nuclear DNA phylogeography of European grayling (Thymallus thymallus): evidence for secondary contact zones in central Europe, Mol. Ecol., 14, 1707, 10.1111/j.1365-294X.2005.02520.x Gupta, 2004, Use of genetically improved and alien species for aquaculture and conservation of aquatic biodiversity in Africa, 113 Gustafson, 1988, Approximating confidence intervals for indices of fish population size Structure, North Am. J. Fish. Manag., 8, 139, 10.1577/1548-8675(1988)008<0139:MBACIF>2.3.CO;2 Guyon, 2012, A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs, BMC Genet., 13, 1 Hallerman, 2014, Conservation genetics of tilapias: seeking to define appropriate units for management, Isr. J. Aquac. - Bamidgeh, 66, 2 Harris, 1995, Nucleotide sequence and genomic organization of cichlid fish minisatellites, Gnome, 38, 177, 10.1139/g95-022 Harris, 1991, DNA fingerprinting of tilapia, Oreochromis niloticus, and its application to aquaculture genetics, Aquaculture, 92, 157, 10.1016/0044-8486(91)90017-2 Hartl, 2007 Harvey, 2002, Molecular-cytogenetic analysis reveals sequence differences between the sex chromosomes of Oreochromis niloticus: evidence for an early stage of sex-chromosome differentiation, Cytogenet. Genome Res., 97, 76, 10.1159/000064036 Harvey, 2002, Karyotype analysis of Oreochromis mortimeri (Trewavas) and Sarotherodon melanotheron (Rûppell), Aquac. Res., 33, 339, 10.1046/j.1365-2109.2002.00678.x Hedgecock, 1990, Genetic drift and effective population sizes of hatchery-propagated stocks of the Pacific oyster, Crassostrea gigas, Aquaculture, 88, 21, 10.1016/0044-8486(90)90316-F Hickling, 1960, The Malacca tilapia hybrids, J. Genet., 57, 1, 10.1007/BF02985334 Hossain, 2012, Genetic diversity analysis of aromatic landraces of rice (Oryza sativa L.) by microsatellite markers, Genes, Genomes and Genomics, 6, 42 Hudson, 2013, Genomic signatures of relaxed disruptive selection associated with speciation reversal in whitefish, BMC Evol. Biol., 13, 1, 10.1186/1471-2148-13-108 Hussain, 2004 Hutchings, 2008, The nature of fisheries- and farming-induced evolution, Mol. Ecol., 17, 294, 10.1111/j.1365-294X.2007.03485.x Ilves, 2014, A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics, Mol. Ecol. Resour., 14, 802, 10.1111/1755-0998.12222 Jalabert, 1971, Déterminisme du sexe chez les hybrides entre Tilapia macrochir et Tilapia nilotica. Étude de la sex-ratio dans les recroisements des hybrides de premiere génération par les espèces parentes, Ann. Biol. Anim. Biochim. Biophys., 11, 155, 10.1051/rnd:19710110 Jenneckens, 1999, Proof of the successful development of Nile tilapia (Oreochromis niloticus) clones by DNA fingerprinting, Aquaculture, 173, 377, 10.1016/S0044-8486(98)00462-1 Karl, 1992, Balancing selection at allozymes loci in Oysters: implication from nuclear RFLPs, Science (80-.), 256, 100, 10.1126/science.1348870 Katagiri, 2001, Construction and characterization of BAC libraries for three fish species: rainbow trout, carp and tilapia, Anim. Genet., 32, 200, 10.1046/j.1365-2052.2001.00764.x Katagiri, 2005, A BAC-based physical map of the Nile tilapia genome, BMC Genomics, 6, 1, 10.1186/1471-2164-6-89 Kirankumar, 2003, Production of androgenetic tiger barb, Puntius tetrazona, Aquaculture, 228, 37, 10.1016/S0044-8486(03)00132-7 Kocher, 1998, A genetic linkage map of a cichlid fish, the Tilapia (Oreochromis niloticus), Genetics, 148, 1225, 10.1093/genetics/148.3.1225 Kocher, 2005, Genome sequence of a cichlid fish : the nile Tilapia (Oreochromis niloticus), Cichlid Genome Consortium., 1 Koskinen, 2002, Microsatellite data resolve phylogeographic patterns in European grayling, Thymallus thymallus, Salmonidae, Heredity, 88, 391, 10.1038/sj.hdy.6800072 Kudo, 2015, A microsatellite-based genetic linkage map and putative sex-determining genomic regions in Lake Victoria cichlids, Gene, 560, 156, 10.1016/j.gene.2015.01.057 Ky, 2012, Fitness of early life stages in F1 interspecific hybrids between Dicentrarchus labrax and D. Punctatus, Aquat. Living Resour., 25, 67, 10.1051/alr/2012006 Lahav, 1990, The development of all-male tilapia hybrids in Nir David Israel, Isr. J. Aquac. Bamidgeh, 42, 58 Laroche, 2004, Genetic structure of fragmented populations of a threatened endemic percid of the Rhône river: zingel asper, Heredity, 92, 329, 10.1038/sj.hdy.6800424 Laroche, 1999, Genetic structure and differentiation among populations of two cyprinids, Leuciscus cephalus and Rutilus rutilus, in a large European river, Can. J. Fish. Aquat. Sci., 56, 1659, 10.1139/f99-100 Larsson, 2007, Concordance of allozyme and microsatellite differentiation in a marine fish, but evidence of selection at a microsatellite locus, Mol. Ecol., 16, 1135, 10.1111/j.1365-294X.2006.03217.x Lazard, 1990, Transferts de poissons et développement de la production piscicole, Exemple de trois pays d’Afrique subsaharienne, Rev. Hydrobiol. Trop., 23, 251 Lazard, 2009, La pisciculture des tilapias, Cah. Agric., 18, 393 Lazard, 2013, 1 Lee, 1996, Microsatellite DNA markers for genetic mapping in Oreochromis niloticus, J. Fish Biol., 49, 169 Lee, 2007, Comparative genomics and positional cloning, 323 Lee, 2003, Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis, Anim. Genet., 34, 379, 10.1046/j.1365-2052.2003.01035.x Lee, 2005, A second-generation genetic linkage map of tilapia (Oreochromis spp.), Genetics, 170, 237, 10.1534/genetics.104.035022 Lee, 2010, An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags, BMC Genomics, 11, 1, 10.1186/1471-2164-11-278 Lemaire, 2000, Do discrepancies between microsatellite and allozyme variation reveal differential selection between sea and lagoon in the sea bass (Dicentrarchus labrax)?, Mol. Ecol., 9, 457, 10.1046/j.1365-294x.2000.00884.x Li, 2006, Improving growth performance and caudal fin stripe pattern in selected F6–F8 generations of GIFT Nile tilapia (Oreochromis niloticus L.) using mass selection, Aquac. Res., 37, 1165, 10.1111/j.1365-2109.2006.01543.x Lind, 2015, Differences in sexual size dimorphism among farmed tilapia species and strains undergoing genetic improvement for body weight, Aquac. Reports, 1, 20, 10.1016/j.aqrep.2015.03.003 Liu, 2007, Aquaculture genome technologies Liu, 2004, DNA marker technologies and their applications in aquaculture genetics, Aquaculture, 238, 1, 10.1016/j.aquaculture.2004.05.027 Liu, 2018, Progress in aquaculture genetics and breeding in China, J. World Aquac. Soc., 49, 272, 10.1111/jwas.12519 Lynch, 1994, Analysis of population genetic structure with RAPD markers, Mol. Ecol., 3, 91, 10.1111/j.1365-294X.1994.tb00109.x Mair, 1991, Sex determination in the genus Oreochromis: sex reversal, gynogenesis and triploidy in O. Niloticus (L.), Theor. Appl. Genet., 82, 144, 10.1007/BF00226205 Majumdar, 1983, Sex ratios from interspecific crosses within the tilapias, Proceedings of the International Symposium on Tilapia in Aquaculture, 624 Majumdar, 1986, Relative DNA content of somatic nuclei and chromosomal studies in three genera, Tilapia, Sarotherodon, and Oreochromis of the tribe Tilapiini (Pisces, Cichlidae), Genetica, 68, 175, 10.1007/BF02424441 Manosroi, 2003, Karyotype analysis of the hybrid, thai red Tilapia (Oreochromis niloticus Linn. X Oreochromis mossambicus Linn.), J. Biol. Sci. Martins, 2004, Physical mapping of the Nile tilapia (Oreochromis niloticus) genome by fluorescent in situ hybridization of repetitive DNAs to metaphase chromosomes - a review, Aquaculture, 231, 37, 10.1016/j.aquaculture.2003.08.017 McGoldrick, 1997, Fixation, segregation and linkage of allozyme loci in inbred families of the Pacific Oyster Crassostrea gigas (Thunberg): implications for the causes of inbreeding depression, Genetics, 146, 321, 10.1093/genetics/146.1.321 Mélard, 2015 Meyer, 1993, Evolution of mitochondrial DNA in fishes, Biochem. Mol. Biol. fishes, 2, 1 Micha, 1996, Croissance comparée des hybrides (F1, F2 et F3) de oreocbromls niLoticus (L.) Et O. Mecrochlr (blgr.), Le Troisième Symposium International Sur Le Tilapia En Aquaculture, 393 Mittell, 2015, Are molecular markers useful predictors of adaptive potential?, Ecol. Lett., 18, 772, 10.1111/ele.12454 Morin, 2009, Assessing statistical power of SNPs for population structure and conservation studies, Mol. Ecol. Resour., 9, 66, 10.1111/j.1755-0998.2008.02392.x Myers, 1995, Induction of diploid androgenetic and mitotic gynogenetic Nile tilapia (Oreochromis niloticus L.), Theor. Appl. Genet., 90, 205, 10.1007/BF00222203 Nagaraj, 2007, A hitchhiker’s guide to expressed sequence tag (EST) analysis, Brief. Bioinform., 8, 6, 10.1093/bib/bbl015 Ndiaye, 2010, 1 Neira, 2016, Evaluation of the growth and carcass quality of diallel crosses of four strains of Nile tilapia (Oerochromis niloticus), Aquaculture, 451, 213, 10.1016/j.aquaculture.2015.08.033 Nelson, 2006 Nguyen, 2006 Nguyen, 2006 Nielsen, 2010, Genetic analysis of common carp (Cyprinus carpio) strains. I: genetic parameters and heterosis for growth traits and survival, Aquaculture, 304, 14, 10.1016/j.aquaculture.2010.03.016 Nikolic, 2009, An examination of genetic diversity and effective population size in Atlantic salmon populations, Genet. Res., 91, 395, 10.1017/S0016672309990346 Nikolic, 2009, A set of 37 microsatellite DNA markers for genetic diversity and structure analysis of Atlantic salmon Salmo salar populations, J. Fish Biol., 74, 458, 10.1111/j.1095-8649.2008.02094.x Nyingi, 2012 Nyingi, 2009, Genetic characterization of an unknown and endangered native population of the Nile tilapia Oreochromis niloticus (Linnaeus, 1758) (Cichlidae; Teleostei) in the Loboi Swamp (Kenya), Aquaculture, 297, 57, 10.1016/j.aquaculture.2009.09.017 O’reilly, 1995, The evolving technology of DNA fingerprinting and its application to fisheries and aquaculture, J. Fish Biol., 47, 29, 10.1111/j.1095-8649.1995.tb06042.x Ollivier, 2000, 247 Onozato, 1984, Diploidization of gynogenetically activated Salmonid eggs using hydrostatic pressure, Aquaculture, 43, 91, 10.1016/0044-8486(84)90013-9 Ouattara, 2003, Aquaculture potential of the black-chinned tilapia, Sarotherodon melanotheron (Cichlidae), Comparative study of the effect of stocking density on growth performance of landlocked and natural populations under cage culture conditions in Lake Ayame (Côte d’. Aquac. Res., 34, 1223 Ouattara, 2005, Performances de croissance d’une souche isolée du tilapia estuarien Sarotherodon melanotheron (Perciformes, Cichlidae) en bassins en béton, en étangs en terre et en cages flottantes, Ann. l’Université Mar. Ngouabi, 6, 113 Ouattara, 2009, Changes in gill ionocyte morphology and function following transfer from fresh to hypersaline waters in the tilapia Sarotherodon melanotheron, Aquaculture, 290, 155, 10.1016/j.aquaculture.2009.01.025 Ouattara, 2009, 313 Ouedraogo, 2014 Owusu-Frimpong, 2005, Comparison of some traits of economic importance in Tilapias (Oreochromis niloticus and Sarotherodon galilaeus) with particular reference to their culture in Ghana, Naga WorldFish Cent. Q., 28, 33 Palaiokostas, 2013, Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing, BMC Genomics, 14, 1, 10.1186/1471-2164-14-566 Papadopoulou, 2010, Revisiting the insect mitochondrial molecular clock: the mid-aegean trench calibration, Mol. Biol. Evol., 27, 1659, 10.1093/molbev/msq051 Park, 1994, Developments in molecular techniques in fisheries, Rev. Fish Biol. Fish., 4, 272, 10.1007/BF00042906 Paugy, 2004, 1 Peruzzi, 1993, Initiation of gynogenesis in Oreochromis niloticus following heterologous fertilization, J. Fish Biol., 43, 585, 10.1111/j.1095-8649.1993.tb00441.x Poompuang, 1997, Toward detection of quantitative trait loci and marker‐assisted selection in fish, Rev. Fish. Sci. Aquac., 5, 253, 10.1080/10641269709388600 Pouyaud, 1994, Différenciation génétique des populations de sarotherodon melanotheron, rüppell, 1853, 66 Pouyaud, 1999, Kin cohesiveness and possible inbreeding in the mouthbrooding tilapia Sarotherodon melanotheron (Pisces Cichlidae), Mol. Ecol., 8, 803, 10.1046/j.1365-294X.1999.00632.x Pruginin, 1975, All-male broods of Tilapia nilotica × T. Aurea hybrids, Aquaculture, 6, 11, 10.1016/0044-8486(75)90086-1 Rengmark, 2007, Genomic structure of the Nile tilapia (Oreochromis niloticus) transferrin gene and a haplotype associated with saltwater tolerance, Aquaculture, 272, 146, 10.1016/j.aquaculture.2007.08.035 Richard, 2008, Comparative genomics and molecular dynamics of DNA repeats in eukaryotes, Microbiol. Mol. Biol. Rev., 72, 686, 10.1128/MMBR.00011-08 Rodrigues, 2014, Polymorphism in the regulatory region of the aromatase CYP19a gene in Nile Tilapia, J. Life Sci., 8, 101 Rognon, 2003, Large extent of mitochondrial DNA transfer from Oreochromis aureus to O. Niloticus in West Africa, Mol. Ecol., 12, 435, 10.1046/j.1365-294X.2003.01739.x Rognon, 1996, Allozyme variation in natural and cultured populations in two tilapia species: oreochromis niloticus and Tilapia zillii, Heredity, 76, 640, 10.1038/hdy.1996.91 Romana-Eguia, 2004, Genetic diversity in farmed Asian Nile and red hybrid tilapia stocks evaluated from microsatellite and mitochondrial DNA analysis, Aquaculture, 236, 131, 10.1016/j.aquaculture.2004.01.026 Ronkin, 2015, Intestinal transcriptome analysis revealed differential salinity adaptation between two tilapiine species, Comp. Biochem. Physiol. - Part D Genomics Proteomics, 13, 35, 10.1016/j.cbd.2015.01.003 Rougeot, 2008, Early sex reversal during embryonic development in the Nile tilapia, Cybium, 32, 104 Rougeot, 2008, Effect of high temperature during embryogenesis on the sex differentiation process in the Nile tilapia, Oreochromis niloticus, Aquaculture, 276, 205, 10.1016/j.aquaculture.2008.02.001 Ruane, 2013 Sarder, 1999, Production and propogation of fully inbred Clonal lines in the Nile Tilapia (Oreochromis niloticus L.), J. Exp. Zool., 284, 675, 10.1002/(SICI)1097-010X(19991101)284:6<675::AID-JEZ9>3.0.CO;2-D Schliewen, 2004, Reticulate sympatric speciation in Cameroonian crater lake cichlids, Front. Zool., 1, 5, 10.1186/1742-9994-1-5 Schliewen, 2001, Genetic and ecological divergence of a monophyletic cichlid species pair under fully sympatric conditions in Lake Ejagham, Cameroon. Mol. Ecol., 10, 1471, 10.1046/j.1365-294X.2001.01276.x Schmouth, 2015, Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development, BMC Genomics, 16, 1, 10.1186/s12864-015-1770-3 Scribner, 2000, Hybridization in freshwater fishes: a review of case studies and cytonuclear methods of biological inference, Rev. Fish Biol. Fish., 10, 293, 10.1023/A:1016642723238 Semagn, 2006, An overview of molecular marker methods for plants, African J. Biotechnol., 5, 2540 Senanan, 2004, Genetic impacts of hybrid catfish farming (Clarias macrocephalus x C. gariepinus) on native catfish populations in central Thailand, Aquaculture, 235, 167, 10.1016/j.aquaculture.2003.08.020 Shelton, 1997, Artificial propagation of nile tilapia for chromosome manipulation, 25 Skalamera, 1999, No evidence for genetic differentiation of the mussel Mytilus galloprovincialis between lagoons and the seaside, Mar. Ecol. Prog. Ser., 178, 251, 10.3354/meps178251 Smouse, 2010, How many SNPs are enough?, Mol. Ecol., 19, 1265, 10.1111/j.1365-294X.2010.04555.x Sodsuk, 1991, Molecular systematics of three tilapiine genera Tilapia, Sarotherodon and Oreochromis using allozyme data, J. Fish Biol., 39, 301, 10.1111/j.1095-8649.1991.tb05093.x Sodsuk, 1995, Evolutionary relationships of the Lake Malawi Oreochromis species: evidence from allozymes, J. Fish Biol., 47, 321 Sofy, 2008, Karyotypic diversity of some tilapia species, Nat. Sci. (Irvine), 6, 19 Soler, 2010, Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus), BMC Genomics, 11, 1, 10.1186/1471-2164-11-636 Soliman, 2017, Comparative population genetic structure of redbelly tilapia (Coptodon zillii (Gervais, 1848) from three different aquatic habitats in Egypt, Ecol. Evol., 7, 11092, 10.1002/ece3.3586 Stickney, 2005 Szitenberg, 2012, Mitochondrial and morphological variation of Tilapia zillii in Israel, BMC Res. Notes, 5, 1, 10.1186/1756-0500-5-172 Szulkin, 2010, Heterozygosity-fitness correlations: a time for reappraisal, Evolution (N. Y)., 64, 1202 Tagu, 2010 Tave, 1990, Effects of intraspecific hybridization in tilapia nilotica on survival under ambient winter temperature in Alabama, J. World Aquac. Soc., 21, 201, 10.1111/j.1749-7345.1990.tb01023.x Tayamen, 2002, Tilapia broodstock development for saline waters in the Philippines, 32 Tessema, 2006, Effect of rearing temperatures on the sex ratios of Oreochromis niloticus populations, Aquaculture, 258, 270, 10.1016/j.aquaculture.2006.04.041 Thomas, 2010 Tibihika, 2018, Application of microsatellite genotyping by sequencing (SSR-GBS) to measure genetic diversity of the East African Oreochromis niloticus, Conserv. Genet., 1 Toguyeni, 2004, Tilapia production and its global impacts in central african countries, Bureau of Fisheries and Aquatic Resources (BFAR) & American Tilapia Association (ATA) (Ed.), 6th International Symposium on Tilapia in Aquaculture, 8 Toguyeni, 2007, Genetic structure of domestic and natural populations of the Nile tilapia, Oreochromis niloticus in Burkina Faso, West Africa, Aquaculture, 272, 314, 10.1016/j.aquaculture.2007.07.194 Toguyeni, 2009, Sexual dimorphism in two pure cichlid species, Oreochromis niloticus niloticus (Linnaeus, 1758) and Sarotherodon melanotheron melanotheron Ruppel 1852, and their intergeneric hybrids, African J. Aquat. Sci., 34, 69, 10.2989/AJAS.2009.34.1.7.732 Toniato, 2010, Discrimination of tilapia species of the genera Oreochromis, Tilapia and Sarotherodon by PCR-RFLP of 5S rDNA, Aquac. Res., 41, 934, 10.1111/j.1365-2109.2009.02366.x Trewavas, 1984 Usman, 2013, Molecular characterisation of two cichlids populations (Tilapia guineensis and Sarotherodon melanotheron) from different water bodies in Lagos State, Nigeria. Int. J. Biotechnol. Mol. Biol. Res., 4, 71, 10.5897/IJBMBR2013.0159 Verrier, 2000, Utilisation des marqueurs pour la gestion de la variabilité génétique des populations, La génétique moléculaire ses Appl., 291 Vignal, 2002, A review on SNP and other types of molecular markers and their use in animal genetics, Genet. Sel. Evol., 34, 275, 10.1186/1297-9686-34-3-275 Vos, 1995, AFLP: a new technique for DNA fingerprinting, Nucleic Acids Res., 23, 4407, 10.1093/nar/23.21.4407 Watanabe, 2004, Extensive analysis of ORF sequences from two different cichlid species in Lake Victoria provides molecular evidence for a recent radiation event of the Victoria species flock Identity of EST sequences between Haplochromis chilotes and Haplochromis sp, Re. Gene, 343, 263 Watson, 2012 Welsh, 1990, Fingerprinting genomes using PCR with arbitrary primers, Nucleic Acids Res., 18, 7213, 10.1093/nar/18.24.7213 Wessels, 2011, Temperature dependent sex ratios in selected lines and crosses with a YY-male in Nile tilapia (Oreochromis niloticus), Aquaculture, 318, 79, 10.1016/j.aquaculture.2011.04.039 Wiener, 2009 Williams, 1990, DNA polymorphisms amplified by arbitrary primers are useful as genetic markers, Nucleic Acids Res., 18, 6531, 10.1093/nar/18.22.6531 Wohlfarth, 1994, The unexploited potential of tilapia hybrids in aquaculture, Aquac. Fish. Manag., 25, 781 Wohlfarth, 1981 Wright, 1994, Mutation at VNTRs: Are Minisatellites the Evolutionary Progeny of Microsatellites?, Génome, 37, 345, 10.1139/g94-047 Wright, 1994, Microsatelites: genetic markers for the future, Rev. Fish Biol. Fish., 4, 384, 10.1007/BF00042912 Xia, 2014, Genome-wide discovery and in silico mapping of gene-associated SNPs in Nile tilapia, Aquaculture, 432, 67, 10.1016/j.aquaculture.2014.04.028 Xia, 2015, Signatures of selection in tilapia revealed by whole genome resequencing, Sci. Rep., 5, 1 Yapi-Gnaore, 1996, Estimation de paramètres génétiques additifs et non additifs de la croissance d’alevins de trois souches de oreochromis, Le Troisième Symposium International Sur Le Tilapia En Aquaculture, 470 Yoboué, 2012, Genetic diversity and adaptability of Sarotherodon melanotheron (Cichlidae) in coastal ecosystem, Ethol. Ecol. Evol., 24, 230, 10.1080/03949370.2011.643921 Yoboue, 2014, Diversité et structure génétique de Sarotherodon melanotheron (Pisces : cichlidae) révélées par les microsatellites, Eur. Sci. J., 10, 299 Yue, 2017, Current status of genome sequencing and its applications in aquaculture, Aquaculture, 468, 337, 10.1016/j.aquaculture.2016.10.036 Zardoya, 1996, Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of Cichlid fishes (Pisces: perciformes), Proc. R. Soc. B Biol. Sci., 263, 1589, 10.1098/rspb.1996.0233