Advances in functional and structural MR image analysis and implementation as FSL

Andersson, 2001, Modelling geometric distortions in EPI time series, NeuroImage, 13, 903, 10.1006/nimg.2001.0746

Bannister, 2002, Spatio-temporal realignment of FMRI data

Basser, 1994, Estimation of the effective self-diffusion tensor from the NMR spin echo, J. Magn. Reson., B, 103, 247, 10.1006/jmrb.1994.1037

Beckmann, 2004, Probabilistic independent component analysis for functional magnetic resonance imaging, IEEE Trans. Med. Imag., 23, 137, 10.1109/TMI.2003.822821

Beckmann, 2004, Tensorial extensions to independent component analysis for multi-subject/session FMRI data

Beckmann, 2003, General multi-level linear modelling for group analysis in FMRI, NeuroImage, 20, 1052, 10.1016/S1053-8119(03)00435-X

Beckmann, 2003, Gaussian/Gamma mixture modelling of ICA/GLM spatial maps

Behrens, 2003, Characterization and propagation of uncertainty in diffusion-weighted MR imaging, Magn. Reson. Med., 50, 1077, 10.1002/mrm.10609

Behrens, 2003, Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging, Nat. Neurosci., 6, 750, 10.1038/nn1075

Bianciardi, 2003, How experimental design and first-level filtering influence efficiency in second-level analysis of event-related fMRI data

Biswal, 1995, Functional connectivity in the motor cortex of resting human brain using echo-planar MRI, Magn. Reson. Med., 34, 537, 10.1002/mrm.1910340409

Buxton, 1998, Dynamics of blood flow and oxygenation changes during brain activation: the balloon model, Magn. Reson. Med., 39, 855, 10.1002/mrm.1910390602

Conturo, 1999, Tracking neuronal fiber pathways in the living human brain, Proc. Natl. Acad. Sci. U. S. A., 96, 10422, 10.1073/pnas.96.18.10422

De Luca, 2002, Low frequency signals in FMRI—“resting state networks” and the “intensity normalisation problem”

De Luca, 2004, Spatial consistency of resting state networks across sessions and across subjects

De Stefano, 2003, Voxel-level cross-subject statistical analysis of brain atrophy in early relapsing remitting MS patients, 2625

Everitt, 1999, Mixture model mapping of brain activation in functional magnetic resonance images, Hum. Brain Mapp., 7, 1, 10.1002/(SICI)1097-0193(1999)7:1<1::AID-HBM1>3.0.CO;2-H

Friston, 2000, To smooth or not to smooth?, NeuroImage, 12, 196, 10.1006/nimg.2000.0609

Friston, 2002, Classical and Bayesian inference in neuroimaging: theory, NeuroImage, 16, 465, 10.1006/nimg.2002.1090

Holmes, 1998, Generalisability, random effects and population inference, vol. 7, S754

Jenkinson, 2001, Improved unwarping of EPI volumes using regularised B0 maps

Jenkinson, 2003, A fast, automated, n-dimensional phase unwrapping algorithm, Magn. Reson. Med., 49, 193, 10.1002/mrm.10354

Jenkinson, 2001, A global optimisation method for robust affine registration of brain images, Med. Image Anal., 5, 143, 10.1016/S1361-8415(01)00036-6

Jenkinson, 2002, Improved optimisation for the robust and accurate linear registration and motion correction of brain images, NeuroImage, 17, 825, 10.1006/nimg.2002.1132

Jenkinson, 2004, A perturbation for magnetic field calculations of non-conductive objects, Magn. Reson. Med., 10.1002/mrm.20194

Jezzard, 1995, Correction for geometric distortion in echo planar images from B0 field variations, Magn. Reson. Med., 34, 65, 10.1002/mrm.1910340111

Johansen-Berg, 2004, Functional anatomical validation and individual variation of diffusion tractography-based segmentation of the human thalamus, Cereb. Cortex, 10.1093/cercor/bhh105

Kwan, 1999, Mri simulation-based evaluation of image processing and classification methods, IEEE Trans. Med. Imag., 18, 1085, 10.1109/42.816072

McGonigle, 2000, Variability in fMRI: an examination of intersession differences, NeuroImage, 11, 708, 10.1006/nimg.2000.0562

Roche, 1998, The correlation ratio as a new similarity measure for multimodal image registration, 1115

Smith, 2002, Fast robust automated brain extraction, Hum. Brain Mapp., 17, 143, 10.1002/hbm.10062

Smith, 1997, SUSAN—A new approach to low level image processing, Int. J. Comput. Vis., 23, 45, 10.1023/A:1007963824710

Smith, 2002, Spatial statistical analysis of MTr images in different populations

Smith, 2001, Normalised accurate measurement of longitudinal brain change, J. Comput. Assist. Tomogr., 25, 466, 10.1097/00004728-200105000-00022

Smith, 2002, Accurate, robust and automated longitudinal and cross-sectional brain change analysis, NeuroImage, 17, 479, 10.1006/nimg.2002.1040

Smith, 2004, Variability in fMRI: a re-examination of intersession differences, Hum. Brain Mapp.

Stenger, 2003, FMRI acquisition informatics tool, Hum. Brain Mapp.

Viola, 1997, Alignment by maximization of mutual information, Int. J. Comput. Vis., 24, 137, 10.1023/A:1007958904918

Woolrich, 2001, Temporal autocorrelation in univariate linear modelling of FMRI data, NeuroImage, 14, 1370, 10.1006/nimg.2001.0931

Woolrich, 2004, Multi-level linear modelling for FMRI group analysis using Bayesian inference, NeuroImage, 21, 1732, 10.1016/j.neuroimage.2003.12.023

Woolrich, 2004, Mixture models with adaptive spatial regularisation for segmentation with an application to FMRI data, IEEE Trans. Med. Imag.

Woolrich, 2004, Constrained linear basis sets for HRF modelling using Variational Bayes, NeuroImage, 21, 1748, 10.1016/j.neuroimage.2003.12.024

Woolrich, 2004, Fully Bayesian spatio-temporal modelling of FMRI data, IEEE Trans. Med. Imag., 23, 213, 10.1109/TMI.2003.823065

Worsley, 1992, A three-dimensional statistical analysis for CBF activation studies in human brain, J. Cereb. Blood Flow Metab., 12, 900, 10.1038/jcbfm.1992.127

Zhang, 2001, Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm, IEEE Trans. Med. Imag., 20, 45, 10.1109/42.906424