Distinct DNA methylation profiles in malignant mesothelioma, lung adenocarcinoma, and non-tumor lung

Lung Cancer - Tập 47 - Trang 193-204 - 2005
Jeffrey A. Tsou1, Linda Y.C. Shen1, Kimberly D. Siegmund2, Tiffany I. Long1, Peter W. Laird1, Chandrika K. Seneviratne3, Michael N. Koss3, Harvey I. Pass4, Jeffrey A. Hagen1, Ite A. Laird-Offringa1
1Norris Cancer Center and Departments of Surgery and Biochemistry and Molecular Biology, Room NOR 6420, 1441 Eastlake Ave., Keck School of Medicine, University of Southern California, Los Angeles, CA 90089-9176, USA
2Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089-9176, USA
3Department of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089-9176, USA
4Department of Thoracic Surgery, Karamanos Cancer Institute, Wayne State University, Detroit, MI 48201, USA

Tài liệu tham khảo

Boylan, 2000, Mesothelioma: new concepts in diagnosis and management, Curr Opin Pulm Med, 6, 157, 10.1097/00063198-200003000-00013

Craighead, 1987, Current pathogenetic concepts of diffuse malignant mesothelioma, Hum Pathol, 18, 544, 10.1016/S0046-8177(87)80354-4

Harwood, 1976, Pseudomesotheliomatous carcinoma of the lung A variant of peripheral lung cancer, Am J Clin Oncol, 65, 159

Protopapa, 2000, Image analysis of mesothelioma. I. Differentiation of mesothelioma from adenocarcinoma of the lung, Anal Quant Cytol Histol, 22, 114

Roberts, 2001, Immunohistochemical analysis still has a limited role in the diagnosis of malignant mesothelioma A study of thirteen antibodies, Am J Clin Pathol, 116, 253, 10.1309/XL6K-8E62-9FLD-V8Q8

Bedrossian, 1992, Differential diagnosis between mesothelioma and adenocarcinoma: a multimodal approach based on ultrastructure and immunocytochemistry, Semin Diagn Pathol, 9, 124

Tsou, 2002, DNA methylation analysis: a powerful new tool for lung cancer diagnosis, Oncogene, 21, 5450, 10.1038/sj.onc.1205605

Laird, 2003, The power and the promise of DNA methylation markers, Nat Rev Cancer, 3, 253, 10.1038/nrc1045

Li, 1992, Targeted mutation of the DNA methyltransferase gene results in embryonic lethality, Cell, 69, 915, 10.1016/0092-8674(92)90611-F

Laird, 1997, Oncogenic mechanisms mediated by DNA methylation, Mol Med Today, 97, 223, 10.1016/S1357-4310(97)01019-8

Baylin, 2000, DNA hypermethylation in tumorigenesis, Trends Genet, 16, 168, 10.1016/S0168-9525(99)01971-X

Jones, 1999, Cancer epigenetics coming of age, Nat Genet, 21, 163, 10.1038/5947

Baylin, 2001, Aberrant patterns of DNA methylation, chromatin formation and gene expression in cancer, Hum Mol Genet, 10, 687, 10.1093/hmg/10.7.687

Costello, 2001, Methylation matters, J Med Genet, 38, 285, 10.1136/jmg.38.5.285

Esteller, 2001, A gene hypermethylation profile of human cancer, Cancer Res, 61, 3225

Virmani, 2002, Hierarchical clustering of lung cancer cell lines using DNA methylation markers, Cancer Epid Biomarkers Prev, 11, 291

Sullivan Pepe, 2001, Phases of biomarker development for early detection of cancer, J Natl Cancer Inst, 93, 1054, 10.1093/jnci/93.14.1054

Wong, 2002, Inactivation of p16(INK4a) expression in malignant mesothelioma by methylation, Lung Cancer, 38, 131, 10.1016/S0169-5002(02)00178-2

Hirao, 2002, Alterations of the p16(INK4) locus in human malignant mesothelial tumors, Carcinogenesis, 23, 1127, 10.1093/carcin/23.7.1127

Toyooka, 2001, Aberrant methylation and Simina Virus 40 Tag sequences in malignant mesothelioma, Cancer Res, 61, 5727

Toyooka, 2002, Progressive aberrant methylation of the RASSF1A gene in simian virus 40 infected human mesothelioma cells, Oncogene, 21, 4340, 10.1038/sj.onc.1205381

Murthy, 2000, Expression of GPC3, an X-linked recessive overgrowth gene, is silenced in malignant mesothelioma, Oncogene, 19, 410, 10.1038/sj.onc.1203322

Ohta, 1999, Thrombospondin-1 expression and clinical implications in malignant pleural mesothelioma, Cancer, 85, 2570, 10.1002/(SICI)1097-0142(19990615)85:12<2570::AID-CNCR12>3.0.CO;2-F

Kleymenova, 1998, Identification of a tumor-specific methylation site in the Wilms tumor suppressor gene, Oncogene, 16, 713, 10.1038/sj.onc.1201583

Shivapurkar, 2004, Aberrant methylation of trail decoy receptor genes is frequent in multiple tumor types, Int J Cancer, 109, 786, 10.1002/ijc.20041

He, 2003, SOCS-3 is frequently silenced by hypermethylation and suppresses cell growth in human lung cancer, Proc Natl Acad Sci USA, 100, 14133, 10.1073/pnas.2232790100

Eads, 2000, MethyLight: a high-throughput assay to measure DNA methylation, Nucleic Acids Res, 28, 32, 10.1093/nar/28.8.e32

Trinh, 2001, DNA methylation analysis by MethyLight technology, Methods, 25, 456, 10.1006/meth.2001.1268

Laird, 1991, Simplified mammalian DNA isolation procedure, Nucleic Acids Res, 19, 4293, 10.1093/nar/19.15.4293

Eads, 2001, Epigenetic patterns in the progression of esophageal adenocarcinoma, Cancer Res, 61, 3410

Olek, 1996, A modified and improved method for bisulphite based cytosine methylation analysis, Nucleic Acids Res, 24, 5064, 10.1093/nar/24.24.5064

Agresti, 1992, A survey of exact inference for contingency tables, Stat Sci, 7, 131, 10.1214/ss/1177011454

Benjamini, 1995, Controlling the false discovery rate: a practical and powerful approach to multiple testing, J R Stat Soc B, 57, 289

Neter, 1990

Hay, 1996, Cell line banks and their role in cancer research, J Cell Biochem, Suppl 24, 107, 10.1002/jcb.240630507

Markl, 2001, Global and gene-specific epigenetic patterns in human bladder cancer genomes are relatively stable in vivo and in vitro over time, Cancer Res, 61, 5875

Ueki, 2002, Aberrant CpG island methylation in cancer cell lines arises in the primary cancers from which they were derived, Oncogene, 21, 2114, 10.1038/sj.onc.1205275

Paz, 2003, A systematic profile of DNA methylation in human cancer cell lines, Cancer Res, 63, 1114

Toyooka, 2001, DNA methylation profiles of lung tumors, Mol Cancer Ther, 1, 61

Burbee, 2001, Epigenetic inactivation of RASFF1A in lung and breast cancers and malignant phenotype suppression, J Natl Cancer Inst, 93, 691, 10.1093/jnci/93.9.691

Issa, 2000, CpG-island methylation in aging and cancer, Curr Topics Microbiol Immunol, 249, 101

Palmisano, 2000, Predicting lung cancer by detecting aberrant promoter methylation in sputum, Cancer Res, 60, 5954

Brabender, 2001, Adenomatous polyposis coli gene promoter hypermethylation in non-small cell lung cancer is associated with survival, Oncogene, 20, 3528, 10.1038/sj.onc.1204455

Zochbauer-Muller, 2001, Aberrant promoter methylation of multiple genes in non-small cell lung cancers, Cancer Res, 61, 249

Waki, 2003, Age-related methylation of tumor suppressor and tumor-related gene: an analysis of autopsy samples, Oncogene, 22, 4128, 10.1038/sj.onc.1206651

Horii, 1993, Multiple forms of the APC gene transcripts and their tissue-specific expression, Hum Mol Genet, 2, 283, 10.1093/hmg/2.3.283

Gordon, 2002, Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma, Cancer Res, 62, 4963

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Lung Cancer

Tập 47

193-204

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