Identification and analysis of olfactory genes in Dioryctria abietella based on the antennal transcriptome

Ai, 2013, Ionotropic glutamate receptors IR64a and IR8a form a functional odorant receptor complex in vivo in Drosophila, J. NeuroImmune Pharmacol., 33, 10741 Andersson, 2013, Antennal transcriptome analysis of the chemosensory gene families in the tree killing bark beetles, Ips typographus and Dendroctonus ponderosae (Coleoptera: Curculionidae: Scolytinae), BMC Genomics, 14, 198, 10.1186/1471-2164-14-198 Dallakyan, 2015, Small-molecule library screening by docking with PyRx, Chem. Biol., 243, 10.1007/978-1-4939-2269-7_19 Damberger, 2007, Structural basis of ligand binding and release in insect pheromone-binding proteins: NMR structure of Antheraea polyphemus PBP1 at pH 4.5, J. Mol. Biol., 373, 811, 10.1016/j.jmb.2007.07.078 Du, 2018, Identification and characterization of chemosensory genes in the antennal transcriptome of spodoptera exigua, Comp. Biochem. Physiol., Part D: Genomics Proteomics., 27, 54 Du, 2018, Identification of candidate chemosensory genes in Mythimna separata by transcriptomic analysis, BMC Genomics, 19, 10.1186/s12864-018-4898-0 Du, 2005, Phylogenetic framework for Dioryctria (Lepidoptera: Pyralidae: Phycitinae) based on combined analysis of mitochondrial DNA and morphology, Can. Entomol., 137, 685, 10.4039/n05-033 Dunipace, 2001, Spatially restricted expression of candidate taste receptors in the Drosophila gustatory system, Curr. Biol., 11, 822, 10.1016/S0960-9822(01)00258-5 Fatzinger, 1970, Rearing successive generations of Dioryctria abietella (Lepidoptera: Pyralidae (Phycitinae)) on artificial media, Ann. Entomol. Soc. Am., 63, 809, 10.1093/aesa/63.3.809 Feng, 2015, Transcriptome and expression profiling analysis link patterns of gene expression to antennal responses in Spodoptera litura, BMC Genomics, 16, 10.1186/s12864-015-1375-x Fiser, 2003, Modeller: generation and refinement of homology-based protein structure models, Methods Enzymol., 374, 461, 10.1016/S0076-6879(03)74020-8 Forstner, 2009, A receptor and binding protein interplay in the detection of a distinct pheromone component in the silkmoth Antheraea polyphemus, Int. J. Biol. Sci., 5, 745, 10.7150/ijbs.5.745 Glaser, 2015, Differential expression of the chemosensory transcriptome in two populations of the stemborer Sesamia nonagrioides, Insect Biochem. Mol. Biol., 65, 28, 10.1016/j.ibmb.2015.07.008 Glynn, 2004, Bacillus thuringiensis variety kurstaki × aizawai applied to spruce flowers reduced Dioryctria abietella (Lepidoptera: Pyralidae) infestation without affecting seed quality, J. Econ. Entomol., 97, 1836, 10.1093/jee/97.6.1836 Gong, 2014, Identification and expression profile analysis of putative odorant-binding proteins in Sitodiplosis mosellana (Gehin) (Diptera: Cecidomyiidae), Biochem. Biophys. Res. Commun., 444, 164, 10.1016/j.bbrc.2014.01.036 Grosse-Wilde, 2011, Antennal transcriptome of Manduca sexta, Proc. Natl. Acad. Sci. U. S. A., 108, 7449, 10.1073/pnas.1017963108 Gu, 2011, Identification and tissue distribution of odorant binding protein genes in the lucerne plant bug Adelphocoris lineolatus (Goeze), Insect Biochem. Mol. Biol., 41, 254, 10.1016/j.ibmb.2011.01.002 Gu, 2013, Identification and expression profiling of odorant binding proteins and chemosensory proteins between two wingless morphs and a winged morph of the cotton aphid Aphis gossypii glover, PLoS One, 8, 10.1371/journal.pone.0073524 Gu, 2014, Molecular characterization and differential expression of olfactory genes in the antennae of the black cutworm moth Agrotis ipsilon, PLoS One, 9, 10.1371/journal.pone.0103420 Gu, 2015, Identification and comparative expression analysis of odorant binding protein genes in the tobacco cutworm Spodoptera litura, Sci. Rep., 5, 10.1038/srep13800 Guo, 2012, Three pheromone-binding proteins help segregation between two Helicoverpa species utilizing the same pheromone components, Insect Biochem. Mol. Biol., 42, 708, 10.1016/j.ibmb.2012.06.004 Hekmat-Scafe, 2002, Genome-wide analysis of the odorant-binding protein gene family in Drosophila melanogaster, Genome Res., 12, 1357, 10.1101/gr.239402 Hu, 2016, Antennal transcriptome analysis and expression profiles of odorant binding proteins in Eogystia hippophaecolus (Lepidoptera: Cossidae), BMC Genomics, 17, 10.1186/s12864-016-3008-4 Hull, 2014, Identification and characterization of a sex peptide receptor-like transcript from the western tarnished plant bug Lygus hesperus, Insect Mol. Biol., 23, 301, 10.1111/imb.12082 Jacquin-Joly, 2012, Candidate chemosensory genes in female antennae of the noctuid moth Spodoptera littoralis, Int. J. Biol. Sci., 8, 1036, 10.7150/ijbs.4469 Kitabayashi, 1998, Molecular cloning of cDNA for p10, a novel protein that increases in the regenerating legs of Periplaneta americana (American cockroach), Insect Biochem. Mol. Biol., 28, 785, 10.1016/S0965-1748(98)00058-7 Knecht, 2016, Distinct combinations of variant ionotropic glutamate receptors mediate thermosensation and hygrosensation in Drosophila, Elife, e17879, 5 Koenig, 2015, A reference gene set for chemosensory receptor genes of Manduca sexta, Insect Biochem. Mol. Biol., 66, 51, 10.1016/j.ibmb.2015.09.007 Koganezawa, 2002, Novel odorant-binding proteins expressed in the taste tissue of the fly, Chem. Senses, 27, 319, 10.1093/chemse/27.4.319 Koh, 2014, The Drosophila IR20a clade of ionotropic receptors are candidate taste and pheromone receptors, Neuron, 83, 850, 10.1016/j.neuron.2014.07.012 Krieger, 1996, Binding proteins from the antennae of Bombyx mori, Insect Biochem. Mol. Biol., 26, 297, 10.1016/0965-1748(95)00096-8 Leal, 2013, Odorant reception in insects: roles of receptors, binding proteins, and degrading enzymes, Annu. Rev. Entomol., 58, 373, 10.1146/annurev-ento-120811-153635 Leitch, 2015, Chemosensory genes identified in the antennal transcriptome of the blowfly Calliphora stygia, BMC Genomics, 16, 10.1186/s12864-015-1466-8 Li, 2015, Identification of putative odorant binding protein genes in Asecodes hispinarum, a parasitoid of coconut leaf beetle (Brontispa longissima) by antennal RNA-Seq analysis, Biochem. Biophys. Res. Commun., 467, 514, 10.1016/j.bbrc.2015.10.008 Li, 2015, Candidate chemosensory genes identified in Colaphellus bowringi by antennal transcriptome analysis, BMC Genomics, 16, 10.1186/s12864-015-2236-3 Li, 2017, Identification of odorant binding proteins in Carpomya vesuviana and their binding affinity to the male-borne semiochemicals and host plant volatiles, J. Insect Physiol., 100, 100, 10.1016/j.jinsphys.2017.05.013 Liu, 2016, Biotype characterization, developmental profiling, insecticide response and binding property of Bemisia tabaci chemosensory proteins: role of CSP in insect defense, PLoS One, 11 Liu, 2013, Identification and characterization of two sensory neuron membrane proteins from Cnaphalocrocis medinalis (Lepidoptera: Pyralidae), Arch. Insect Biochem. Physiol., 82, 29, 10.1002/arch.21069 Liu, 2012, Candidate olfaction genes identified within the Helicoverpa armigera antennal transcriptome, PLoS One, 7 Löfstedt, 1983, Sex pheromone of the cone Pyralid Dioryctria abietella, Entomol. Exp. Appl., 34, 20, 10.1111/j.1570-7458.1983.tb03285.x Löfstedt, 2012, (3Z,6Z,9Z,12Z,15Z)-pentacosapentaene and (9Z,11E)-tetradecadienyl acetate: sex pheromone of the spruce coneworm Dioryctria abietella (Lepidoptera: Pyralidae), J. Appl. Entomol., 136, 70, 10.1111/j.1439-0418.2011.01619.x Ma, 2016, Identification and comparative study of chemosensory genes related to host selection by legs transcriptome analysis in the tea geometrid Ectropis obliqua, PLoS One, 11 Moon, 2006, A taste receptor required for the caffeine response in vivo, Curr. Biol., 16, 1812, 10.1016/j.cub.2006.07.024 Nichols, 2008, The SNMP/CD36 gene family in Diptera, Hymenoptera and Coleoptera: Drosophila melanogaster, D. pseudoobscura, Anopheles gambiae, Aedes aegypti, Apis mellifera, and Tribolium castaneum, Insect Biochem. Mol. Biol., 38, 398, 10.1016/j.ibmb.2007.11.003 Ozaki, 2008, Identification and genomic structure of chemosensory proteins (CSP) and odorant binding proteins (OBP) genes expressed in foreleg tarsi of the swallowtail butterfly Papilio xuthus, Insect Biochem. Mol. Biol., 38, 969, 10.1016/j.ibmb.2008.07.010 Pettersen, 2004, UCSF chimera—a visualization system for exploratory research and analysis, J. Comput. Chem., 25, 1605, 10.1002/jcc.20084 Poivet, 2012, The use of the sex pheromone as an evolutionary solution to food source selection in caterpillars, Nat. Commun., 3, 535, 10.1038/ncomms2050 Quevillon, 2005, InterProScan: protein domains identifier, Nucleic Acids Res., 33, W116, 10.1093/nar/gki442 Rinker, 2013, Antennal transcriptome profiles of anopheline mosquitoes reveal human host olfactory specialization in Anopheles gambiae, BMC Genomics, 14, 749, 10.1186/1471-2164-14-749 Rogers, 2001, Antennal SNMPs (sensory neuron membrane proteins) of lepidoptera define a unique family of invertebrate CD36-like proteins, J. Neurobiol., 49, 47, 10.1002/neu.1065 Rogers, 2001, Expression of SNMP-1 in olfactory neurons and sensilla of male and female antennae of the silkmoth Antheraea polyphemus, Cell Tissue Res., 303, 433, 10.1007/s004410000305 Rojas, 2018, Analysis of the grapevine moth Lobesia botrana antennal transcriptome and expression of odorant-binding and chemosensory proteins, Comp. Biochem. Physiol., Part D: Genomics Proteomics., 27, 1 Rosenberg, 2005, Assessment of cone-damaging insects in a Swedish spruce seed orchard and the efficacy of large-scale application of Bacillus thuringiensis variety aizawai kurstaki against lepidopterans, J. Econ. Entomol., 98, 402, 10.1093/jee/98.2.402 Sandler, 2000, Sexual attraction in the silkworm moth: structure of the pheromone-binding-protein-bombykol complex, Chem. Biol., 7, 143, 10.1016/S1074-5521(00)00078-8 Studio, 2008, Discovery Studio, Accelrys Sun, 2013, The preferential binding of a sensory organ specific odorant binding protein of the alfalfa plant bug Adelphocoris lineolatus AlinOBP10 to biologically active host plant volatiles, J. Chem. Ecol., 39, 1221, 10.1007/s10886-013-0333-9 Svensson, 2018, Challenges of pheromone-based mating disruption of Cydia strobilella and Dioryctria abietella in spruce seed orchards, J. Pest. Sci., 91, 639, 10.1007/s10340-017-0929-x Tian, 2018, Antennal transcriptome analysis of the chemosensory gene families in carposina sasakii (lepidoptera: carposinidae), BMC Genomics, 19, 10.1186/s12864-018-4900-x Vogt, 1981, Pheromone binding and inactivation by moth antennae, Nature, 293, 161, 10.1038/293161a0 Vosshall, 2011, A unified nomenclature system for the insect olfactory coreceptor, Chem. Senses, 36, 497, 10.1093/chemse/bjr022 Wang, 2017, Chemosensory genes in the antennal transcriptome of two syrphid species, Episyrphus balteatus and Eupeodes corollae (Diptera: Syrphidae), BMC Genomics, 18, 10.1186/s12864-017-3939-4 Wang, 2003, Cloning, expression and immunocytochemical localization of a general odorant-binding protein gene from Helicoverpa armigera (Hübner), Insect Biochem. Mol. Biol., 33, 115, 10.1016/S0965-1748(02)00182-0 Wang, 2017, Identification and expression profile analysis of odorant binding protein and chemosensory protein genes in Bemisia tabaci MED by head transcriptome, PLoS One, 12 Wanner, 2004, Analysis of the insect OS-D-like gene family, J. Chem. Ecol., 30, 889, 10.1023/B:JOEC.0000028457.51147.d4 Wanner, 2005, Developmental expression patterns of four chemosensory protein genes from the eastern spruce budworm, Chroistoneura fumiferana, Insect Mol. Biol., 14, 289, 10.1111/j.1365-2583.2005.00559.x Wanner, 2007, Female-biased expression of odourant receptor genes in the adult antennae of the silkworm, Bombyx mori, Insect Mol. Biol., 16, 107, 10.1111/j.1365-2583.2007.00708.x Weslien, 1999, Biological control of the spruce coneworm Dioryatria abietella: spraying with Bacillus thuringiensis reduced damage in aseed orchard, Scand. J. For. Res., 14, 127, 10.1080/02827589950152854 Whitehouse, 2011, Biology and management of North American cone-feeding Dioryctria species, Can. Entomol., 143, 1, 10.4039/n10-045 Wiederstein, 2007, ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins, Nucleic Acids Res., 35, W407, 10.1093/nar/gkm290 Xu, 2010, A complementary study on biological characteristics of two species of Dioryctria (Lepidoptera: Pyralidae) and their damage to cones and twigs of Korean pine. Sci, Silvae Sin, 46, 188 Yan, 2016, Identification and tissue expression profiling of odorant binding protein genes in the red palm weevil, Rhynchophorus ferrugineus, Springerplus, 5, 1, 10.1186/s40064-016-3198-x Yang, 2017, Identification of genes involved in chemoreception in Plutella xyllostella by antennal transcriptome analysis, Sci. Rep., 7, 11941, 10.1038/s41598-017-11646-7 Yin, 2013, Odorant-binding proteins and olfactory coding in the solitary bee Osmia cornuta, Cell. Mol. Life Sci., 70, 3029, 10.1007/s00018-013-1308-2 Yonemura, 2009, Conservation of silk genes in Trichoptera and Lepidoptera, J. Mol. Evol., 68, 641, 10.1007/s00239-009-9234-5 Zeng, 2015, Identification and comparative expression profiles of chemoreception genes revealed from major chemoreception organs of the rice leaf folder, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae), PLoS One, 10, 10.1371/journal.pone.0144267 Zhang, 2016, Comparative transcriptome analysis of chemosensory genes in two sister leaf beetles provides insights into chemosensory speciation, Insect Biochem. Mol. Biol., 79, 108, 10.1016/j.ibmb.2016.11.001 Zhang, 2015, Identification and functional characterization of sex pheromone receptors in the common cutworm (Spodoptera litura), Chem. Senses, 40, 7, 10.1093/chemse/bju052 Zhang, L.W., Kang, K., Jiang, S.C., Zhang, Y.N., Wang, T.T., Zhang, J., Sun, L., Yang, Y.Q., Huang, C.C., Jiang, L.Y. and Ding, D.G., 2016a. Analysis of the antennal transcriptome and insights into olfactory genes in Hyphantria cunea (Drury). PLoS One. 11, e0164729. Zhang, 2014, Antennal transcriptome analysis and comparison of olfactory genes in two sympatric defoliators, Dendrolimus houi and Dendrolimus kikuchii (Lepidoptera: Lasiocampidae), Insect Biochem. Mol. Biol., 52, 69, 10.1016/j.ibmb.2014.06.006 Zhang, 2013, Differential expression patterns in chemosensory and non-chemosensory tissues of putative chemosensory genes identified by transcriptome analysis of insect pest the purple stem borer Sesamia inferens (Walker), PLoS One, 8 Zhou, 2015, Analysis of antennal transcriptome and odorant binding protein expression profiles of the recently identified parasitoid wasp, Sclerodermus sp, Comp. Biochem. Physiol., Part D: Genomics Proteomics., 16, 10 Zhou, 2004, "Plus-C" odorant-binding protein genes in two Drosophila species and the malaria mosquito Anopheles gambiae, Gene, 327, 117, 10.1016/j.gene.2003.11.007 Zhou, 2008, Identification of odorant-binding proteins of the yellow fever mosquito Aedes aegypti: genome annotation and comparative analyses, Insect Mol. Biol., 17, 147, 10.1111/j.1365-2583.2007.00789.x