Molecular characterization of tat gene and long terminal repeat region of human immunodeficiency virus type-1 detected among the injecting drug users (IDUs) of Manipur, India: Identification of BC recombinants

Virus Research - Tập 147 - Trang 195-201 - 2010
Ranajoy Mullick1, Satarupa Sengupta1, Kamalesh Sarkar1, Sekhar Chakrabarti1
1HIV/AIDS Research Laboratory, Divison of Virology, National Institute of Cholera and Enteric Diseases, P-33, C.I.T. Road, Scheme-XM, Beliaghata, Kolkata 700010, West Bengal, India

Tài liệu tham khảo

Berkhout, 1989, Tat trans-activates the human immunodeficiency virus through a nascent RNA target, Cell, 59, 273, 10.1016/0092-8674(89)90289-4 Berkhout, 1992, Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis, Nucleic Acid Res., 20, 27, 10.1093/nar/20.1.27 Bhanja, 2005, Determination of gag and env subtypes of HIV-1 detected among injecting drug users (IDUs) in Manipur, India: evidence for intersubtype recombination, Virus Res., 114, 149, 10.1016/j.virusres.2005.06.008 Boyam, 1968, Seperation of leukocytes from blood and bone marrow, Scand. J. Clin. Lab. Invest., 21, 77 Brigati, 2003, HIV Tat, its TARgets and the control of viral gene expression, FEMS Microbiol. Lett., 220, 57, 10.1016/S0378-1097(03)00067-3 Choudhury, 2000, Increased promoter diversity reveals a complex phylogeny of human immunodeficiency virus type 1 subtype C in India, J. Hum. Virol., 3, 35 Gao, 1996, The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin, J. Virol., 70, 7013, 10.1128/JVI.70.10.7013-7029.1996 Garcia, 1988, Functional domains required for tat-induced transcriptional activation of the HIV-1 long terminal repeat, EMBO J., 7, 3143, 10.1002/j.1460-2075.1988.tb03181.x Hall, 1999, BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symp. Ser. 41, 95 Hetzer, 2005, Decoding Tat: the biology of HIV Tat posttranslational modifications, Microbes Infect., 7, 1364, 10.1016/j.micinf.2005.06.003 Heyndrickx, 2000, Simplified strategy for detection of recombinant human immunodeficiency virus type 1 group M isolates by gag/env heteroduplex mobility assay, J. Virol., 74, 363, 10.1128/JVI.74.1.363-370.2000 Jeang, 1999, Multifaceted activities of the HIV-1 transactivator of transcription Tat, J. Biol. Chem., 274, 28837, 10.1074/jbc.274.41.28837 Joseph, 2003, Human immunodeficiency virus-1 Nef protein interacts with Tat and enhances HIV-1 gene expression, FEBS Lett., 548, 37, 10.1016/S0014-5793(03)00725-7 Karn, 1999, Tackling Tat, J. Mol. Biol., 293, 235, 10.1006/jmbi.1999.3060 Kurosu, 2002, Human immunodeficiency virus type 1 subtype C exhibits higher transactivation activity of Tat than subtypes B and E, Microbiol. Immunol., 46, 787, 10.1111/j.1348-0421.2002.tb02766.x Laspia, 1989, HIV-1 Tat protein increases transcriptional initiation and stabilizes elongation, Cell, 59, 283, 10.1016/0092-8674(89)90290-0 Lole, 1999, Full-length human immunodeficiency virus type 1 genomes from subtype c infected seroconverters in India, with evidence of intersubtype recombination, J. Virol., 73, 152, 10.1128/JVI.73.1.152-160.1999 Lund, 2003, A functional genetic approach suggests a novel interaction between the human immunodeficiency virus type 1 (HIV-1) Tat protein and HIV-1 TAR RNA in vivo, J. Gen. Virol., 84, 603, 10.1099/vir.0.18645-0 Muesing, 1987, Regulation of mRNA accumulation by a human immunodeficiency virus trans-activator protein, Cell, 48, 691, 10.1016/0092-8674(87)90247-9 Mullick, 2006, Phylogenetic analysis of env, gag, and tat genes of HIV type 1 detected among the injecting drug users in West Bengal, India, AIDS Res. Hum. Retroviruses, 22, 1293, 10.1089/aid.2006.22.1293 Neogi, 2008, Novel HIV-1 long terminal repeat (LTR) sequences of subtype B and mosaic intersubtype B/C recombinants in North India, Arch. Virol., 153, 1961, 10.1007/s00705-008-0210-y Ranga, 2004, Tat protein of human immunodeficiency virus type 1 subtype C strains is a defective chemokine, J. Virol., 78, 2586, 10.1128/JVI.78.5.2586-2590.2004 Ray, S.C., 1998. Simplot for Windows (Version 1.6), Baltimore MD (distributed by author http://www.welch.jhu.edu/∼sray/download) Rodriguez, 2007, Genetic and functional characterization of the LTR of HIV-1 subtypes A and C circulating in India, AIDS Res. Hum. Retroviruses, 23, 1428, 10.1089/aid.2007.0152 Sambrook, 2001, vol.3 Schwartz, 1990, Cloning and functional analysis of multiply spliced mRNA species of human immunodeficiency virus type 1, J. Virol., 64, 2519, 10.1128/JVI.64.6.2519-2529.1990 Siddappa, 2007, Gene expression analysis from human immunodeficiency virus type 1 subtype C promoter and construction of bicistronic reporter vectors, AIDS Res. Hum. Retroviruses, 23, 1268, 10.1089/aid.2006.0305 Tamura, 2007, MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0, Mol. Biol. Evol., 24, 1596, 10.1093/molbev/msm092 Turk, 2006, Higher transactivation activity associated with LTR and Tat elements from HIV-1 BF intersubtype recombinant variants, Retrovirology, 3