Standards in Genomic Sciences
Công bố khoa học tiêu biểu
* Dữ liệu chỉ mang tính chất tham khảo
Sắp xếp:
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)Abstract The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provided via the IMG submission site. Users must first define their analysis pr... ... hiện toàn bộ
Standards in Genomic Sciences - Tập 11 Số 1
High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698)
Standards in Genomic Sciences - Tập 12 - Trang 1-11 - 2017
Anaerobium acetethylicum strain GluBS11T belongs to the family Lachnospiraceae within the order Clostridiales. It is a Gram-positive, non-motile and strictly anaerobic bacterium isolated from biogas slurry that was originally enriched with gluconate as carbon source (Patil, et al., Int J Syst Evol Microbiol 65:3289-3296, 2015). Here we describe the draft genome sequence of...... hiện toàn bộ
Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno
Standards in Genomic Sciences - Tập 13 - Trang 1-13 - 2018
“Thiodictyon syntrophicum” sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation...... hiện toàn bộ
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)
Standards in Genomic Sciences - Tập 1 - Trang 54-62 - 2009
Pedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998 comb. nov. is the type species of the rapidly growing genus Pedobacter within the family Sphingobacteriaceae of the phylum ‘Bacteroidetes’. P. heparinus is of interest, because it was the first isolated strain shown to grow with heparin as sole carbon and nitrogen source and because it produces several enzymes involved in the degradation...... hiện toàn bộ
Complete genome sequence of Kytococcus sedentarius type strain (541T)
Standards in Genomic Sciences - - 2009
Kytococcus sedentarius (ZoBell and Upham 1944) Stackebrandt et al. 1995 is the type strain of the species, and is of phylogenetic interest because of its location in the Dermacoccaceae, a poorly studied family within the actinobacterial suborder Micrococcineae. K. sedentarius is known for the production of oligoketide antibiotics as well as for its role as an opportunistic pathogen causing valve e...... hiện toàn bộ
Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camelAbstract We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius ) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico<... ... hiện toàn bộ
Standards in Genomic Sciences - Tập 10 Số 1
Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov.
Standards in Genomic Sciences -
Complete genome sequence of Actinobacillus equuli subspecies equuli ATCC 19392T
Standards in Genomic Sciences - Tập 10 - Trang 1-7 - 2015
Actinobacillus equuli subsp. equuli is a member of the family Pasteurellaceae that is a common resident of the oral cavity and alimentary tract of healthy horses. At the same time, it can also cause a fatal septicemia in foals, commonly known as sleepy foal disease or joint ill disease. In addition, A. equuli subsp. equuli has recently been reported to act as a primary pathogen in...... hiện toàn bộ
Chuỗi gen hoàn chỉnh của Salmonella enterica phân loài arizonae chủng RKS2983 Dịch bởi AI
Standards in Genomic Sciences - Tập 10 - Trang 1-7 - 2015
Salmonella arizonae (còn được gọi là Salmonella nhánh IIIa) là một vi khuẩn Gram âm, không hình thành bào tử, có khả năng di động, có hình dạng que và ký sinh thiếu khí. Chủng S. arizonae RKS2983 đã được phân lập từ một người ở California, Hoa Kỳ. S. arizonae nằm ở giữa hai nhánh Salmonella I (mầm bệnh ở người) và V (còn được gọi là S. bongori; thường không gây bệnh cho con người) và do đó là một ...... hiện toàn bộ
#Salmonella arizonae #giải mã gen #mầm bệnh #tiến hóa vi khuẩn #đặc trưng sinh chất di truyền.
Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437Abstract Here, we report the draft genome sequences of three fungal-interactive
Paraburkholderia terrae
strains, denoted BS110, BS007 and BS437. Phylogenetic analyses showed that the three strains belong to clade II of the genus
Burkholderia
, which was recently renamed
Paraburkholderia
. This novel genus primarily contains environmental species, encompassing non-pathogenic plant- as well as fungal-interactive species. The genome of strain BS007 consists of 11,025,273 bp, whereas those of strains BS110 and BS437 have 11,178,081 and 11,303,071 bp, respectively. Analyses of the three annotated genomes revealed the presence of (1) a large suite of substrate capture systems, and (2) a suite of genetic systems required for adaptation to microenvironments in soil and the mycosphere. Thus, genes encoding traits that potentially confer fungal interactivity were found, such as type 4 pili, type 1, 2, 3, 4 and 6 secretion systems, and biofilm formation (PGA, alginate and pel ) and glycerol uptake systems. Furthermore, the three genomes also revealed the presence of a highly conserved five-gene cluster that had previously been shown to be upregulated upon contact with fungal hyphae. Moreover, a considerable number of prophage-like and CRISPR spacer sequences was found, next to genetic systems responsible for secondary metabolite production. Overall, the three hiện toàn bộ
Standards in Genomic Sciences - Tập 12 Số 1
Tổng số: 547
- 1
- 2
- 3
- 4
- 5
- 6
- 10