Standards in Genomic Sciences

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Genome sequence and description of Corynebacterium ihumii sp. nov.
Standards in Genomic Sciences - Tập 9 - Trang 1128-1143 - 2014
Roshan Padmanabhan, Grégory Dubourg, Jean-Christophe Lagier, Carine Couderc, Caroline Michelle, Didier Raoult, Pierre-Edouard Fournier
Corynebacterium ihumii strain GD7T sp. nov. is proposed as the type strain of a new species, which belongs to the family Corynebacteriaceae of the class Actinobacteria. This strain was isolated from the fecal flora of a 62 year-old male patient, as a part of the culturomics study. _Corynebacterium ihumii is a Gram positive, facultativly anaerobic, nonsporulating bacillus. Here, we describe the fea...... hiện toàn bộ
Complete genome sequence of bacteriochlorophyll-synthesizing bacterium Porphyrobacter neustonensis DSM 9434
Standards in Genomic Sciences - Tập 12 - Trang 1-7 - 2017
Qian Liu, Yue-Hong Wu, Hong Cheng, Lin Xu, Chun-Sheng Wang, Xue-Wei Xu
The genus Porphyrobacter belongs to aerobic anoxygenic phototrophic bacteria cluster. Porphyrobacter neustonensis DSM 9434 was isolated from a eutrophic freshwater pond in Australia, and is able to synthesize Bacteriochlorophyll a as well as grow under aerobic conditions. It is the type species of the genus Porphyrobacter. Here we describe the characteristics of the strain DSM 9434, including the ...... hiện toàn bộ
Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
Standards in Genomic Sciences - Tập 11 - Trang 1-7 - 2016
Francisco Issotta, Pedro A. Galleguillos, Ana Moya-Beltrán, Carol S. Davis-Belmar, George Rautenbach, Paulo C. Covarrubias, Mauricio Acosta, Francisco J. Ossandon, Yasna Contador, David S. Holmes, Sabrina Marín-Eliantonio, Raquel Quatrini, Cecilia Demergasso
Leptospirillum ferriphilum Sp-Cl is a Gram negative, thermotolerant, curved, rod-shaped bacterium, isolated from an industrial bioleaching operation in northern Chile, where chalcocite is the major copper mineral and copper hydroxychloride atacamite is present in variable proportions in the ore. This strain has unique features as compared to the other members of the specie...... hiện toàn bộ
Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12
Standards in Genomic Sciences -
Jianda Ji, Rui Zhang, Nianzhi Jiao
Complete genome sequence of Cellulophaga lytica type strain (LIM-21T)
Standards in Genomic Sciences - Tập 4 - Trang 221-232 - 2011
Amrita Pati, Birte Abt, Hazuki Teshima, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Cynthia D. Jeffries, John C. Detter, Evelyne-Marie Brambilla, K. Palani Kannan, Manfred Rohde, Stefan Spring, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Natalia Ivanova
Cellulophaga lytica (Lewin 1969) Johansen et al. 1999 is the type species of the genus Cellulophaga which belongs to the family Flavobacteriaceae within the phylum ‘Bacteroidetes’ and was isolated from marine beach mud in Limon, Costa Rica. The species is of biotechnological interest because its members produce a wide range of extracellular enzymes capable of degrading proteins and polysaccharides...... hiện toàn bộ
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
Standards in Genomic Sciences - Tập 11 Số 1
Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, H. James Tripp, David Páez-Espino, Kristin Tennessen, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor Markowitz, Nikos C. Kyrpides
AbstractThe DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provided via the IMG submission site. Users must first define their analysis pr...... hiện toàn bộ
Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T)
Standards in Genomic Sciences - Tập 4 Số 1 - Trang 45-53
Amrita Pati, Sabine Gronow, Ahmet Zeytun, Alla Lapidus, Matt Nolan, Nancy Hammon, Shweta Deshpande, Jan‐Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, John C. Detter, Evelyne Brambilla, Manfred Rohde, Markus Göker, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Susan Lucas
The complete genome sequence and analysis of a plasmid-bearing myxobacterial strain Myxococcus fulvus 124B02 (M 206081)
Standards in Genomic Sciences -
Xiaojing Chen, Kuihua Han, Jing Feng, Zhuo Li, Yajie Li, Yuezhong Li
AbstractMyxobacteria, phylogenetically located in the delta division of the Proteobacteria, are well known for characterized social behaviors and large genomes of more than 9 Mb in size. Myxococcus fulvus is a typical species of the genus Myxococcus in the family Myxococca...... hiện toàn bộ
Draft genome sequence of Rubidibacter lacunae strain KORDI 51-2T, a cyanobacterium isolated from seawater of Chuuk lagoon
Standards in Genomic Sciences - - 2013
Dong Han Choi, Jee-Youn Ryu, Kae-Kyoung Kwon, Jung-Hyun Lee, Changhoon Kim, Charity M. Lee, Jae Hoon Noh
A photoautotrophic cyanobacterium, Rubidibacter lacunae was reported in 2008 for the first time. The type strain, KORDI 51-2T, was isolated from seawater of Chuuk lagoon located in a tropical area. Although it belonged to a clade exclusively comprised of extremely halotolerant strains by phylogenetic analyses, R. lacunae is known to be incapable of growth at high salt concentration over 10%. Here ...... hiện toàn bộ
Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOBT)
Standards in Genomic Sciences - Tập 7 - Trang 91-106 - 2012
Caroline M. Plugge, Anne M. Henstra, Petra Worm, Daan C. Swarts, Astrid H. Paulitsch-Fuchs, Johannes C. M. Scholten, Athanasios Lykidis, Alla L. Lapidus, Eugene Goltsman, Edwin Kim, Erin McDonald, Lars Rohlin, Bryan R. Crable, Robert P. Gunsalus, Alfons J. M. Stams, Michael J. McInerney
Syntrophobacter fumaroxidans strain MPOBT is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of products that serve as substrates for other microorganisms. The strain is able to ferm...... hiện toàn bộ
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